SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene845

Length: 2956 nt

UniGene Fasta

>sp_v3.0_unigene845
ATCAAATCGCGCAATGGTTTAGCGACACGATAGGCCACCACGAGGCAGCGGTTCGATCCGCCACAGCCAATCTAGAAGCAGTTGAATCCTCTCCTGGATTCGCCATGTGTGTGCTCTCGCTTTCTGCAGGTGGTCAGGATCAAGGACAGCGTACTGCCGCAGCTACCTATCTCAAAAACTACATCCGCAACCATTGGAGTGGAGGTGGCCCTGCACAATTAAATGAGCGTCTTGAGTTTAGAAATCAGCTTGTACATGTGATTCTTGAAGTGGATGCTCCTGTTCTCAAGCTCTTAGCTGAAGCATTTCATCTAGTAATAGTCAATGATTTTGTACGGGAAAACACATGGCCAGAATTAGTACCTTCCTTGAGGACAGCAATTCAAAATAGTAATTTGGTGAATGCAGCGAGCGGTTTACAATGGAAGACGCTTAATGCGCTCTTAGCTCTTCAAACAATCATTAAACCTTTCCAGTACTTCTTGAACCCGAAAGTGGCAAGGGAACCTGTGCCTGAACAATTGGAGCTGATAGCAAAGGAGGTCCTTGTTCCTTCATATGGAATTTTTCATCATTTTGTAGAACAGGCAGTGGCATTCAAAGGCATTGCGGTGGAGAATGTACATGTACTACTGACTCTCTGCAAGTGCTTTCACTTGGCTGTAAGGTCACACATGCCATCTGCTTTGATTCCTTCCTTGGCTTCTTGGAATCAAGACTTTATTGCCCTTTTGGACTCTATTACTTTGGAGAGTCCCATGGACGAAGCTGAACAATTCAGGCTCAAAGTAGGGAAGAGGTGTTTGCAAATATTCAGTACACTGGTGACTCGACACAGGAAATACACGGACAAATTTATGCCAAGTATGATAACATCAACCATTAAAGCTATCAAGAAGAGCCCTTTAAACGATAAATTTCATGCCTTGCGAGAACGGCTCATATCATTGGCATTTGATGTGATTTCATGTGTACTTGAAACTGGTCCTGGCTGGCGATTGGTTGCTCAACACTTTTCTTCATTATTGGAAACTGCAATTTTTCCTGCATTAAGAATGAACGAAAAGGATATGGTGGAATGGGAGCAAGATACCGATGAATATCTGCGAAAAAATCTTCCATCTGATCTGGATGAAGCAAGTGGTTGGAAAGAAGATCTTTATACACCAAGAAAGAGTGCCTTAAATTTTCTAGGTGTGATTGCATCATCTAAGGGTCCTCCTATGGCAGGTACAAGCAATAAGATAGTATCTACAAAGCGGAAGAAGGGTGGCAAAAGTGGGCAAGGTCTGGGCCAGGGTTCAGCTGGGGAGTTATTGGTGATACCATTTTTATCAAAATTTGTTTTTCCTCCTGATGGTTCTTCTGCAAGCACAGACATTGTCATGAATTACTATGGTGTGTTGTTGGGATATGGAAGCCTACAAGAGTTTTTTAAAGTTCAAAGCTCTGGGCATGTATCGCTTTTACTTCGAACACGAGTGCTGCCTCTTTATTCAATGCCCTCACCTTCACCTTATCTTATTGCCAATGCCAATTGGTTGCTGGGAGAGCTTGCAGTTTGTCTTCCTGAGGAGTTGAATCAGGAGATATATAATTCATTGTTAAAGGCCTTTGTTGCACCAAATGTTGGAAATGTATCTTGGTATCCAGTTCGTGCATCTGCAGCTGGTGCTTTTGCAGCACTTCTTCAGGAGGAGTACACACCAACAGAGTGGCTAAATTTCTTGCAAGTTCTTGTAGGTGGAACTAGTAAGGATAAGGAAGAAGCCTCCCTTTCACTGCAATTGCTAGCTACTGCAGCGGAAGTAGGTGAAGAAAAAGTTAGTCTTCATGTTCCAGCAATTATATCTGCTATCAAAGGAGAAATACTGAGACACATTCCACCTGTCCCAAAACCTTGGCCACAGGTGGTGGAGTTGGGATTTTCAGCATTAGTTGCAATGGCTCGCTGTTGGGACAGTGCAGAACCAGATGAAAATGGGAATGGAAGTATATCCTTAGAGGAGTGGAATTCTGGTTGTGTTTCAGTTGCAGATACATTTGCTGATCTTTTACAACGGGCATGGCTTTCTCATGTAGAGGAAGGGAATGTTTGTGAGGTGCTACCTCCTCCCTCGTGTTTAAATGAAGCATCTGTACTAATATGTTCAATTTTGAAGTATGCCAATGAACCAGAATTAGTGACAACACATAAGATTGAAGCACTTTTACAAGTTTGGGCAGATTTGATAGCTGAATGGAGTGCATGGGAAGAAGATGAGGATCTAGCTGTATTTGAAGCAATTCATGAAGCTATTATTTTAAATGAAAGGTGCGAGCTAAAAAATTTCATAATGGCAGCTGTTCCGCCACCGCCAGCCCCACCTGTTGCACCACGTTCTATTGTTGAAGGCATTGCCACATTCATAAGCTCAGCAATAGAATTGGCATATTCTGCTGCAACATGGCGTGCATGTTTTCTTGCTCATTCTCTTCTTCATGTTCCAAAATTTTCATTTGAAAGTGAAGGCACAAGAACTGCACTAGTAATCCGTTTTGCACAGGCATCACATTCACGTTTCAATCAACTGAAGAGTAGGTCTGTTCCACTTGGGAAACCTCTTCTCCTCGTTATTGCAGCATGCTATTTATGCTTCCCGAGTTCAGTGCAGAAGGTTTTGTTAGAGCAAAAGGATGGAATGGATCCTGGCAATGGATTTTTGAAATGGGCTGAATCATTGGCATATTTAGCCGACAATTCTTCTGAGCCAGGGTTGACGCTGGAATCAGAGATTAAGCTAGTTGTGATGACATTGGTGAAAGTGTTGGAACATCTTCTAGCATTGCCATGTAATGATATGATGTTGGAGGTGGCACATACATGTTTTCGGTCTCTGTTAGATGCAACAAATCGATTGAAAGAAGTTCAGGAAGCAGAAGGTAGTGAAGAAGAGGAAGAAAATGAAGATAATGA

Ace file of the UniGene sp_v3.0_unigene845

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana] gb\|AEE75940.1\| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana]	-	-	0.0	39%
FL-Next	sp=Exportin-2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	19%
Sma3	Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGD8	-	-	1.091e-08	-

Source	Gene names
Sma3	At3g17340; GSVIVT00019697001; GSVIVT00019698001; GSVIVT00033221001; LOC_Os11g47320; Os11g0695900; OsI_37023; OsJ_34826; OsJ_34829; PHYPADRAFT_91749; POPTRDRAFT_724002; RCOM_1002850; VITISV_037443;

Source	GOs	Term	Type	Identity
Sma3	nuclear pore	GO:0005643	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein transporter activity	GO:0008565	Molecular Function	-
Sma3	protein import into nucleus, docking	GO:0000059	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Importin-beta, N-terminal	IPR001494	-	-
Sma3	YTH domain	IPR007275	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002316070.1	predicted protein [Populus trichocarpa]	0.0	49%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: sp_plants

Fln subject: Q9ZPY7

Fln msg: STOP codon was not found. Distance to subject end: 23 aas, atg_distance in limit (1-15): atg_distance = 10, W2: There is no M at the beginning,

Fln protein: QIAQWFSDTIGHHEAAVRSATANLEAVESSPGFAMCVLSLSAGGQDQGQRTAAATYLKNYIRNHWSGGGPAQLNERLEFRNQLVHVILEVDAPVLKLLAEAFHLVIVNDFVRENTWPELVPSLRTAIQNSNLVNAASGLQWKTLNALLALQTIIKPFQYFLNPKVAREPVPEQLELIAKEVLVPSYGIFHHFVEQAVAFKGIAVENVHVLLTLCKCFHLAVRSHMPSALIPSLASWNQDFIALLDSITLESPMDEAEQFRLKVGKRCLQIFSTLVTRHRKYTDKFMPSMITSTIKAIKKSPLNDKFHALRERLISLAFDVISCVLETGPGWRLVAQHFSSLLETAIFPALRMNEKDMVEWEQDTDEYLRKNLPSDLDEASGWKEDLYTPRKSALNFLGVIASSKGPPMAGTSNKIVSTKRKKGGKSGQGLGQGSAGELLVIPFLSKFVFPPDGSSASTDIVMNYYGVLLGYGSLQEFFKVQSSGHVSLLLRTRVLPLYSMPSPSPYLIANANWLLGELAVCLPEELNQEIYNSLLKAFVAPNVGNVSWYPVRASAAGAFAALLQEEYTPTEWLNFLQVLVGGTSKDKEEASLSLQLLATAAEVGEEKVSLHVPAIISAIKGEILRHIPPVPKPWPQVVELGFSALVAMARCWDSAEPDENGNGSISLEEWNSGCVSVADTFADLLQRAWLSHVEEGNVCEVLPPPSCLNEASVLICSILKYANEPELVTTHKIEALLQVWADLIAEWSAWEEDEDLAVFEAIHEAIILNERCELKNFIMAAVPPPPAPPVAPRSIVEGIATFISSAIELAYSAATWRACFLAHSLLHVPKFSFESEGTRTALVIRFAQASHSRFNQLKSRSVPLGKPLLLVIAACYLCFPSSVQKVLLEQKDGMDPGNGFLKWAESLAYLADNSSEPGLTLESEIKLVVMTLVKVLEHLLALPCNDMMLEVAHTCFRSLLDATNRLKEVQEAEGSEEEEENEDN

Protein Length: 985

Fln nts: ATCAAATCGCGCAATGGTTTAGCGACACGATAGGCCACCACGAGGCAGCGGTTCGATCCGCCACAGCCAATCTAGAAGCAGTTGAATCCTCTCCTGGATTCGCCATGTGTGTGCTCTCGCTTTCTGCAGGTGGTCAGGATCAAGGACAGCGTACTGCCGCAGCTACCTATCTCAAAAACTACATCCGCAACCATTGGAGTGGAGGTGGCCCTGCACAATTAAATGAGCGTCTTGAGTTTAGAAATCAGCTTGTACATGTGATTCTTGAAGTGGATGCTCCTGTTCTCAAGCTCTTAGCTGAAGCATTTCATCTAGTAATAGTCAATGATTTTGTACGGGAAAACACATGGCCAGAATTAGTACCTTCCTTGAGGACAGCAATTCAAAATAGTAATTTGGTGAATGCAGCGAGCGGTTTACAATGGAAGACGCTTAATGCGCTCTTAGCTCTTCAAACAATCATTAAACCTTTCCAGTACTTCTTGAACCCGAAAGTGGCAAGGGAACCTGTGCCTGAACAATTGGAGCTGATAGCAAAGGAGGTCCTTGTTCCTTCATATGGAATTTTTCATCATTTTGTAGAACAGGCAGTGGCATTCAAAGGCATTGCGGTGGAGAATGTACATGTACTACTGACTCTCTGCAAGTGCTTTCACTTGGCTGTAAGGTCACACATGCCATCTGCTTTGATTCCTTCCTTGGCTTCTTGGAATCAAGACTTTATTGCCCTTTTGGACTCTATTACTTTGGAGAGTCCCATGGACGAAGCTGAACAATTCAGGCTCAAAGTAGGGAAGAGGTGTTTGCAAATATTCAGTACACTGGTGACTCGACACAGGAAATACACGGACAAATTTATGCCAAGTATGATAACATCAACCATTAAAGCTATCAAGAAGAGCCCTTTAAACGATAAATTTCATGCCTTGCGAGAACGGCTCATATCATTGGCATTTGATGTGATTTCATGTGTACTTGAAACTGGTCCTGGCTGGCGATTGGTTGCTCAACACTTTTCTTCATTATTGGAAACTGCAATTTTTCCTGCATTAAGAATGAACGAAAAGGATATGGTGGAATGGGAGCAAGATACCGATGAATATCTGCGAAAAAATCTTCCATCTGATCTGGATGAAGCAAGTGGTTGGAAAGAAGATCTTTATACACCAAGAAAGAGTGCCTTAAATTTTCTAGGTGTGATTGCATCATCTAAGGGTCCTCCTATGGCAGGTACAAGCAATAAGATAGTATCTACAAAGCGGAAGAAGGGTGGCAAAAGTGGGCAAGGTCTGGGCCAGGGTTCAGCTGGGGAGTTATTGGTGATACCATTTTTATCAAAATTTGTTTTTCCTCCTGATGGTTCTTCTGCAAGCACAGACATTGTCATGAATTACTATGGTGTGTTGTTGGGATATGGAAGCCTACAAGAGTTTTTTAAAGTTCAAAGCTCTGGGCATGTATCGCTTTTACTTCGAACACGAGTGCTGCCTCTTTATTCAATGCCCTCACCTTCACCTTATCTTATTGCCAATGCCAATTGGTTGCTGGGAGAGCTTGCAGTTTGTCTTCCTGAGGAGTTGAATCAGGAGATATATAATTCATTGTTAAAGGCCTTTGTTGCACCAAATGTTGGAAATGTATCTTGGTATCCAGTTCGTGCATCTGCAGCTGGTGCTTTTGCAGCACTTCTTCAGGAGGAGTACACACCAACAGAGTGGCTAAATTTCTTGCAAGTTCTTGTAGGTGGAACTAGTAAGGATAAGGAAGAAGCCTCCCTTTCACTGCAATTGCTAGCTACTGCAGCGGAAGTAGGTGAAGAAAAAGTTAGTCTTCATGTTCCAGCAATTATATCTGCTATCAAAGGAGAAATACTGAGACACATTCCACCTGTCCCAAAACCTTGGCCACAGGTGGTGGAGTTGGGATTTTCAGCATTAGTTGCAATGGCTCGCTGTTGGGACAGTGCAGAACCAGATGAAAATGGGAATGGAAGTATATCCTTAGAGGAGTGGAATTCTGGTTGTGTTTCAGTTGCAGATACATTTGCTGATCTTTTACAACGGGCATGGCTTTCTCATGTAGAGGAAGGGAATGTTTGTGAGGTGCTACCTCCTCCCTCGTGTTTAAATGAAGCATCTGTACTAATATGTTCAATTTTGAAGTATGCCAATGAACCAGAATTAGTGACAACACATAAGATTGAAGCACTTTTACAAGTTTGGGCAGATTTGATAGCTGAATGGAGTGCATGGGAAGAAGATGAGGATCTAGCTGTATTTGAAGCAATTCATGAAGCTATTATTTTAAATGAAAGGTGCGAGCTAAAAAATTTCATAATGGCAGCTGTTCCGCCACCGCCAGCCCCACCTGTTGCACCACGTTCTATTGTTGAAGGCATTGCCACATTCATAAGCTCAGCAATAGAATTGGCATATTCTGCTGCAACATGGCGTGCATGTTTTCTTGCTCATTCTCTTCTTCATGTTCCAAAATTTTCATTTGAAAGTGAAGGCACAAGAACTGCACTAGTAATCCGTTTTGCACAGGCATCACATTCACGTTTCAATCAACTGAAGAGTAGGTCTGTTCCACTTGGGAAACCTCTTCTCCTCGTTATTGCAGCATGCTATTTATGCTTCCCGAGTTCAGTGCAGAAGGTTTTGTTAGAGCAAAAGGATGGAATGGATCCTGGCAATGGATTTTTGAAATGGGCTGAATCATTGGCATATTTAGCCGACAATTCTTCTGAGCCAGGGTTGACGCTGGAATCAGAGATTAAGCTAGTTGTGATGACATTGGTGAAAGTGTTGGAACATCTTCTAGCATTGCCATGTAATGATATGATGTTGGAGGTGGCACATACATGTTTTCGGTCTCTGTTAGATGCAACAAATCGATTGAAAGAAGTTCAGGAAGCAGAAGGTAGTGAAGAAGAGGAAGAAAATGAAGATAATGA

Fln Alignment:

Contig845___IAQWFSDTIGHHEAAVRSATANLEAVESSPGFAMCVLSLSAGGQ-DQGQRTAAATYLKNYIRNHW-----SGGGPAQLNERLEFRNQLVHVILEVDAPVLKLLAEAFHLVIVNDFVRENTWPELVPSLRTAIQNSNLVNAASGLQWKTLNALL-ALQTIIKPFQYFLNPKVAREPVPEQLELIAKEVLVPSYGIF---HHFVEQAVAFKG---IAVENVHVLLTLCKCFHLAVRSHMPSALIPSLASWNQDFIALLDS-----ITLESPMDEAEQFRLKVGKRCLQIFSTLVTRHRKYTDKFMPSMITSTIKAIKKSPLNDKFHALRERLISLAFDVISCVLETGPGWRLVAQHFSSLLETAIFPALRMNEKDMVEWEQDTDEYLRKNLP-SDLD
Q9ZPY7_____________LSQCFLNTLSPIPEPRRTAERALSDAADQANYGLAVLRLVAEPAIDEQTRHAAAVNFKNHLRSRWHPAGDSGISPIVDSEKEQIKTLIVSLMLSASPRIQSQLSEALTVIGKHDFPK--AWPALLPEL-----IANLQNAALAGDYVSVNGILGTASSIFKKFSY----EYRTDALFVDLKYCLDNFAAPLTEIFLKTSSLIDSAASSGGSPPILKPLFESQRLCCTIFYSLNFQDLPEFFEDHMKEWMGEFKKYLSSNYPALESTEEGLTLVDDLRAAICENINHYIEKNEEEFQGFLNEF-ASVVWTLLRDVSKSPSRDQLATTAIKFLTSVSTSVHHALFAGD------NVIKEICQSIVIPNVSLRVEDEEIFEMNYIEFIRRDMEGSDVD

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
2263	75		25		0.996473
2319	20		80		0.995493
2362		80	20		0.995493
2456	88		11		0.923564
2458	11		88		0.923564
2459	11			77	0.968132
2460		11		88	0.923564
2461		11		88	0.923564
2465			11	88	0.923564
2472	11			88	0.923564
2561	11			88	0.923564
2690	25	75			0.996473
2692			75	25	0.996473
2874		50		50	1.0
2875		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain