SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene838

Length: 2432 nt

UniGene Fasta

>sp_v3.0_unigene838
TGTATATGGCTCAGTTCATTTTCTGTTTTGAAATTGGGTAAATATCAGGTACACTATTTTCACAACAACAAACATGCTGTCAGCTCACGCATTTTGTAGCAGAGATTCCGTTGCTTTTGTCCTAAATTATACTTGCGACTCTATGCAAATTTCCTGGCCATCGCCCTCCAAACATGAAATCTGCAGGAATTTCAATGGACTTTCTGCAGTTATCCCCTTCAGTTCAATCCATCACGGAGCCTCAAAATATAGCATCAGGGATTTCTCATGTGGGTCTTGGAATACAAGTACAGGTCTAAGAACTCCTTTGAAAACCTGGCGAAAATGCGCAAAAAGGACTCTGTCCGTAACTTCAGCATTGGGTAGCAATGACGGGTTTCCTAAAGACTCTCCTGCTAAGGCGTTGAGAAGGATTTTAGAGACTCCAGGACTACACCAAGGCCCTGCTTGTTTTGATGCTCTCAGTGCAAAGCTGGTGGAGAAAGCGGGTTTCCAATTCTGTTTCATGAGTGGCTTTTCTGTGTCTGCTGTTCGATTAGCCCTCCCTGATGTTGGCCTCATTTCATATGGAGAAATGGTAGATCAAGGGTCCCAGATTACAGGAGCCGTTTCTATTCCTGTGATTGGAGATGGAGATAACGGTTATGGAAATGCTTTGAATGTTAAGAGAACTGTAAGAGGGTATATAAGAGCAGGCTTTGCAGGAATTTTGCTAGAAGATCAGGTGTCTCCCAAAGCTTGTGGCCATACTCGTGGAAGAAAGGTGGTTTCACGGGAGGAAGCAGTGATGCGCATAAAAGCAGCTGTAGATGCTCGGAAAGAAAGCTCTGCAGACATTATTATTATAGCACGTACAGATGCACGCCAAGCTGTTTCCTTGGAGGAATCACTTTGGAGGGTACAGGCATTTGCTGACGCAGGGGCAGATGTACTTTTCATAGATGCACTTGCTTCTAAAAAAGAAATGCAAGCTTTCTGTAATATTTTTCCTCAGGTTCCCAAAATGGCAAATATGCTTGAAGGTGGTGGTAAAACACCTATATTGAGTCCAATGGAGCTTGAGGAGATTGGATTTAAAATTGTCAGCTACCCTCTTTCCTTGCTGGGAGTGTCTATTCGAGCAATGAAGGATGCTCTTTCTGCCCTGAAGAGTGGCCGCATTCCTCCTCCTGCAACCTTACCATCCTTCGAAGAAATTAAAGATATTATTGGCTTCAATGATTACTATGAAGAAGAGAAGTGCTATTCTATGACTGGACAGTCAGATGCAAAGAATAATGATAAATCTGAACAAAGCGCTAAATACGAGAAAGGGAAAGCATTTCTCAGGACGCAGATGTGGAAGTAATAACTCCATATGTGCTTGAGGACTCTAGTTCTGAGGGTACAAGAACCTCTCTTTCTGGAATCTGGTCCAGCTCTCTGCGGGTCAAGATAACTGCGATGGATGGCTTTGAGAAGCTTGATATCAGGATTCCAGCTGGGTTTTTGGAAGGCTTGGCAAACATCGTTCCAGGTGTTGCAGGTCTGAACCTCAAGTCAATGTTGGATGAAGCTATAGGCAACCTCACAGGTAATTTGGAAAAGGGAAAGAAGTTGATTGATATCAATAATAGGATTGGTGACCGTATCGAAGTTTTTTTGGAGTGAGCAAGAAAAAAAAATCGCACATATTTACAGCAGGATTGCATTATACCAATTGCATGCAAACACAGATAACCAGTGACCTACAAATGGAAGAAACTTTGTTGGCACAGAAACAGGGGAACACACAAGAAATCTTTGTGCCTTTTTCAACCAAAAAATTATCGTTATGCATATTAATGGGAAATATATTTCGAGCCAAGACCAATTCTACCAACACCGAACCTGGGAATACTTTTCCCAGTTTTCTCTTTCTTCTTTGTATAATGGTAAGTACAAGTCATTATCGAAGGGAAATTTTCATGTTTAGATTCAACCTCAACATTCCATTCAGTCTTGTGCCCAAAATGCAGGGAGGTTCCAACGTACAAATTAATTCCGTGCTGGAGAAGCTTGGACGGATTGCAAATAATGATCATATCATTGCATGGTTGTCCCAGTCACAGAGAAGCAATGATGAAGCACTTGATGCAAAGAATATTTCCTAGCGAGTAGGATGGCAATTCAATAGATATTATGTTTCTTATCATGACCCTTGTGTTGAATCTACCGTTTGGCAACTGAACTAATAAAAGAAGTTAGGCACATTGTCTCAGTAATCTAGGCATTAGTGAGCTCTTTGGCACATTATAATCCAAGGTTCTTGCTTGAATTAGACTAATCAAGAACACGTGATTGGTAAAAAAGGAAACTTAGAGTTGATCGAGGAAGATGAACCATAGGAACCGTTAAATAATTAAAAATCCGAGAGATTTTAATTAATAAAATACAAAGTTGTTTACAAATAG

Ace file of the UniGene sp_v3.0_unigene838

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Isocitrate lyase and phosphorylmutase [Medicago truncatula]	-	-	0.0	63%
FL-Next	sp=Carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	38%
Sma3	Putative carboxyphosphonoenolpyruvate mutase	-	-	1.122e-08	-

Source	Gene names
Sma3	At2g43180; CHLREDRAFT_104431; GSVIVT00033583001; GSVIVT00033586001; MICPUCDRAFT_22014; MICPUCDRAFT_5818; MICPUN_92645; MtrDRAFT_AC152184g23v2; MtrDRAFT_AC157893g9v2; OSIGBa0148P16.5; OSJNBa0014K14.17; OSJNBa0044M19.9; OSJNBb0116K07.9; OSTLU_40267; Os04g03

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	lyase activity	GO:0016829	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Isocitrate lyase/phosphorylmutase	IPR000918	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G43180.1	Phosphoenolpyruvate carboxylase family protein chr2:17953719-17955774 REVERSE LENGTH=479	59%
RefSeq	Arabidopsis thaliana	NP_850388.1	phosphoenolpyruvate carboxylase-like protein [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002301634.1	predicted protein [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O49290

Fln msg: your sequence is longer than subject: 425 - 339

Fln protein: MLSAHAFCSRDSVAFVLNYTCDSMQISWPSPSKHEICRNFNGLSAVIPFSSIHHGASKYSIRDFSCGSWNTSTGLRTPLKTWRKCAKRTLSVTSALGSNDGFPKDSPAKALRRILETPGLHQGPACFDALSAKLVEKAGFQFCFMSGFSVSAVRLALPDVGLISYGEMVDQGSQITGAVSIPVIGDGDNGYGNALNVKRTVRGYIRAGFAGILLEDQVSPKACGHTRGRKVVSREEAVMRIKAAVDARKESSADIIIIARTDARQAVSLEESLWRVQAFADAGADVLFIDALASKKEMQAFCNIFPQVPKMANMLEGGGKTPILSPMELEEIGFKIVSYPLSLLGVSIRAMKDALSALKSGRIPPPATLPSFEEIKDIIGFNDYYEEEKCYSMTGQSDAKNNDKSEQSAKYEKGKAFLRTQMWK*

Protein Length: 426

Fln nts: TGTATATGGCTCAGTTCATTTTCTGTTTTGAAATTGGGTAAATATCAGGTACACTATTTTCACAACAACAAAC_-_ATGCTGTCAGCTCACGCATTTTGTAGCAGAGATTCCGTTGCTTTTGTCCTAAATTATACTTGCGACTCTATGCAAATTTCCTGGCCATCGCCCTCCAAACATGAAATCTGCAGGAATTTCAATGGACTTTCTGCAGTTATCCCCTTCAGTTCAATCCATCACGGAGCCTCAAAATATAGCATCAGGGATTTCTCATGTGGGTCTTGGAATACAAGTACAGGTCTAAGAACTCCTTTGAAAACCTGGCGAAAATGCGCAAAAAGGACTCTGTCCGTAACTTCAGCATTGGGTAGCAATGACGGGTTTCCTAAAGACTCTCCTGCTAAGGCGTTGAGAAGGATTTTAGAGACTCCAGGACTACACCAAGGCCCTGCTTGTTTTGATGCTCTCAGTGCAAAGCTGGTGGAGAAAGCGGGTTTCCAATTCTGTTTCATGAGTGGCTTTTCTGTGTCTGCTGTTCGATTAGCCCTCCCTGATGTTGGCCTCATTTCATATGGAGAAATGGTAGATCAAGGGTCCCAGATTACAGGAGCCGTTTCTATTCCTGTGATTGGAGATGGAGATAACGGTTATGGAAATGCTTTGAATGTTAAGAGAACTGTAAGAGGGTATATAAGAGCAGGCTTTGCAGGAATTTTGCTAGAAGATCAGGTGTCTCCCAAAGCTTGTGGCCATACTCGTGGAAGAAAGGTGGTTTCACGGGAGGAAGCAGTGATGCGCATAAAAGCAGCTGTAGATGCTCGGAAAGAAAGCTCTGCAGACATTATTATTATAGCACGTACAGATGCACGCCAAGCTGTTTCCTTGGAGGAATCACTTTGGAGGGTACAGGCATTTGCTGACGCAGGGGCAGATGTACTTTTCATAGATGCACTTGCTTCTAAAAAAGAAATGCAAGCTTTCTGTAATATTTTTCCTCAGGTTCCCAAAATGGCAAATATGCTTGAAGGTGGTGGTAAAACACCTATATTGAGTCCAATGGAGCTTGAGGAGATTGGATTTAAAATTGTCAGCTACCCTCTTTCCTTGCTGGGAGTGTCTATTCGAGCAATGAAGGATGCTCTTTCTGCCCTGAAGAGTGGCCGCATTCCTCCTCCTGCAACCTTACCATCCTTCGAAGAAATTAAAGATATTATTGGCTTCAATGATTACTATGAAGAAGAGAAGTGCTATTCTATGACTGGACAGTCAGATGCAAAGAATAATGATAAATCTGAACAAAGCGCTAAATACGAGAAAGGGAAAGCATTTCTCAGGACGCAGATGTGGAAGTAA___TAACTCCATATGTGCTTGAGGACTCTAGTTCTGAGGGTACAAGAACCTCTCTTTCTGGAATCTGGTCCAGCTCTCTGCGGGTCAAGATAACTGCGATGGATGGCTTTGAGAAGCTTGATATCAGGATTCCAGCTGGGTTTTTGGAAGGCTTGGCAAACATCGTTCCAGGTGTTGCAGGTCTGAACCTCAAGTCAATGTTGGATGAAGCTATAGGCAACCTCACAGGTAATTTGGAAAAGGGAAAGAAGTTGATTGATATCAATAATAGGATTGGTGACCGTATCGAAGTTTTTTTGGAGTGAGCAAGAAAAAAAAATCGCACATATTTACAGCAGGATTGCATTATACCAATTGCATGCAAACACAGATAACCAGTGACCTACAAATGGAAGAAACTTTGTTGGCACAGAAACAGGGGAACACACAAGAAATCTTTGTGCCTTTTTCAACCAAAAAATTATCGTTATGCATATTAATGGGAAATATATTTCGAGCCAAGACCAATTCTACCAACACCGAACCTGGGAATACTTTTCCCAGTTTTCTCTTTCTTCTTTGTATAATGGTAAGTACAAGTCATTATCGAAGGGAAATTTTCATGTTTAGATTCAACCTCAACATTCCATTCAGTCTTGTGCCCAAAATGCAGGGAGGTTCCAACGTACAAATTAATTCCGTGCTGGAGAAGCTTGGACGGATTGCAAATAATGATCATATCATTGCATGGTTGTCCCAGTCACAGAGAAGCAATGATGAAGCACTTGATGCAAAGAATATTTCCTAGCGAGTAGGATGGCAATTCAATAGATATTATGTTTCTTATCATGACCCTTGTGTTGAATCTACCGTTTGGCAACTGAACTAATAAAAGAAGTTAGGCACATTGTCTCAGTAATCTAGGCATTAGTGAGCTCTTTGGCACATTATAATCCAAGGTTCTTGCTTGAATTAGACTAATCAAGAACACGTGATTGGTAAAAAAGGAAACTTAGAGTTGATCGAGGAAGATGAACCATAGGAACCGTTAAATAATTAAAAATCCGAGAGATTTTAATTAATAAAATACAAAGTTGTTTACAAATAG

Fln Alignment:

Contig838___RILETPGLHQGPACFDALSAKLVEKAGFQFCFMSGFSVSAVRLALPDVGLISYGEMVDQGSQI-TGAVSIPVIGDGDNGYGNALNVKRTVRGYIRAGFAGILLEDQVSPKACGHTRGRKVVSREEAVMRIKAAVDARKESSXXXXXXXXXXXXXXVS-LEESLWRVQAFADAGADVLFIDALASKKEMQAFCNIFPQVPKMANMLEGGGKTPILSPMELEEIGFKIVSYPLSLLGVSIRAMKDALSALKSGRIPPP--ATLPSFEEIKDIIGFNDYYEEEKCYS
O49290_____________RLIEEQGIVLMPGCYDALSAAIVQQTGFSAGFISGYALSASLLGKPDFGLLTPPEMAATARSVCASAPNIPIIADADTGGGNALNIQRTVKDLIAAGAAGCFLEDQAWPKKCGHMRGKQVIPAEEHAAKIASARDAIGDSDFFLVARTDVRATSAKSGLEDAIARVNLYMEAGADASFVEAPRDDDELKEI-GKRTKGYRVCNMIE-GGVTPLHTPDELKEMGFHLIVHPLTALYASTRALVDVLKTLKENGSTRDHLQKMATFEEFNSLVDLDSWFELEARYS

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
1249	10			90	0.90298
1252			90	10	0.90298
1470	75		25		1.0
1667	33		66		0.997452
1692		33	66		1.0
1739			33	66	1.0
1789		33	66		0.997452
1793		66		33	0.997452
1983	25			75	1.0
2029	13		86		0.999973
2034	13		86		0.999973
2215	25			75	0.996473
2216	75	25			0.996473
2219	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain