SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene836

Length: 2489 nt

UniGene Fasta

>sp_v3.0_unigene836
CTTATGATTATGATGAGGACTATGCCTATGAATAGGATGACAATGAAGAATCAGCTGAATGCCATGATGTGTCACAAGTAGAGAATCTCAATAGACAAGCTGATGTTTGGCATTGCTCAATTTGCACTTACGAGAATCCAGAGAATCGTTCTGCATGTGACATGTGTGGAGTGATTAGAAATGCTTCTCTGAAAGGTTGTCAGACGGCAGCTGCAACGATTAAAGATATGCCTAAGTCAGACCTGTTAGAGGGGCAAATCAAGATTTGGCGTTGTCTGTGTTGCACCTATGATAATCCAGAGCATATTTCTGTGTGTGGAATTTGTGGAACAGCTAGAAAAGCTTCTTTTGAAGAGTCCCAGGAAACTGCTCCAGAAACCAGAGACATACCTAAAGCAGACCGATCGGATGGAAACACCAAGATTTGGCGTTGTCTGAGTTGCACCTATGATAATCCAGAGCATGTTTCTACATGTGGCATGTGCAGAACAATTAGAAGTGCTTCCTTGGAAGAGTCTCAGGCATCTGCCTCAGGAACTGCAGCTATGTCAAATCCAGCATCTACTACAACAAAAGCTTCTTTGGATATTACCGCTAAAGTGGAGGCAGAAATAGTAGAAGATAATGCAAAAAGTTCAAAAGAACCTGCTCCTTCATCATTCATTAAAGCTGATAAACATGAGAAGAGAGAAAATGGAGTCCTTTGGGAAGATAAATCTTCTTCAAATGGACTAGTATCAGAGGAGTTGCAAAAGCAGAGCTTCAGTCCGGGTTACAATTTTCATAACAGTAACAAAGTCCTGAAGAATGCTGTTCCTCTGGAGGAGTACAAGGCTGAACCTTGGATGCTTCATGAACACAGTGAAGAGGGCAAAAACTTGCTACATCTTGCAATTGTTGGCCATGTTGATGCAGGCAAGTCAACTTTAACAGGAAAACTTCTCCATCTCATGGGTCGGGTTTCGCAGAAGGAAATGCACAAATACCAAAGAGAGGCTAAGCAGAAAGGGAAGGAATCCTTTGCATATGCATGGGTTCTAGATGAAAGTCCAGAAGAAAGGGAGAGAGGTGTAACTATGACAGTTGCTGTAGCACATTTTGACACCGCCAAATTTCATGTAGTACTTTTAGATTCTCCCGGGCACAAGGATTTTGTTCCAAACTTGATCGTTGGTGCATCTCAAGCAGATGCCGCAGTTTTAGTTGTGGATGCTTCTACAGGTGCATTTGAGGCAGGAATGGATGGGCAAGGAACAGGGGGACAGACAAAGGAGCATGCACAATTAATTAGAAGTTTTGGAGTTGAACAATTAATCATTGCTATAAATAAAATGGACGTAGTTGACTATTCTAAAGAAAGGTTTGACTTCATAAAATCACAGCTTGGGCTATTTCTTCGGCGTTGTGGTTTTAAAGAATCTTCTCTAATGTGGATTCCCATGAGCGTTATTGAAAACCAGAATTTAGTGACTAGCGCATCTGATGGCCGTCTGATGTCCTGGTATACTGGACCACATTTTTTACAGTCCATAGACCTTTTTAAGCCTCCAACTAGAGACATATCTCGTCCTCTACGGCTTCCTATCTCTGAGGTTATACAATCACGGACACTAGGTCAAGTTGCTGCCAGTGGAAAATTGGATGCAGGAGCTATTAAAGTTGGCACAAAGCTTTTAGTTATGCCTGCAGGGGAAGAAGCAATAGTGAAAGCTATTGAACAGGATGGTAACGAGCTAAATGTTGCAAAGGCTGGGGACAGCGTAGATATTGGTCTTCAAGGAATTGACTCCTTAATTCTAATGACAGGGGGAGTGCTTTGTCATCCCAATTTTCCTGTACCAGTAGCGAGACGTATTGAACTGAAGGTTGCTGTTTTGGACATCAAAAAACCAATATTATTTGGAGCGGAGGTGGAACTCCATGCACACCATGCAAAGGAGGCTGCAAAGATAGTACAGATTTTAGCCATATTGGATCCAAAAACTGGTTTAGTCCGTAAGAAGGCACCACGACTTCTAACTGCCAACCAAAGTGCTTTGATAGAGGTTTTGCCTCACCGGGGAATCTGCATCGAGGAGTACTGCAATTACAGACCCCTAGGAAGAGTCACATTGCGAGCTACTGGCAAAACTATAGCTGTGGGTATAGTCACTCGCATCATTGAACAACAGTAGCACACCTTCCTATTACACGACTTTATTTTGCCTGAAATTTTCATAGACTATCACATAGAGAAAACCTTTTTCTCGATTTGTAGTGTAAAGACAACCATTGTATGTTAGTTATGAATTTATCACCGTCTAATTTACATATTTAATCAGGAGGGCTATAATAGCCATCAATTTTTTATCAGTAGAAGGCAGCTTCAGTCCTAAGCCAATAGCACATGAGTTCTGGAATGATTTATTAATTATAAAACAAGATACTTAGCAGATATAAATTTGCAACCAGTAATGCCCTTGAACCAAAAAAAATAGCGGTGAAAAAGA

Ace file of the UniGene sp_v3.0_unigene836

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Elongation factor 1-alpha, putative n=1 Tax=Ricinus communis RepID=B9SPP6_RICCO	-	-	0.0	47%
FL-Next	sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%
Sma3	Elongation factor 1 alpha	-	-	3.665e-06	-

Source	Gene names
Sma3	At5g10630; CHLREDRAFT_99082; EFG4; F12B17_10; GSVIVT00031276001; H0402C08.12; H0801D08.2; MICPUCDRAFT_22325; MICPUN_107249; OSJNBa0006A01.22; OSJNBa0064G10.19; OSJNba0093F12.4; OSTLU_36881; Os01g0116600; Os04g0595300; Os04g0677800; OsI_17225; OsI_17929; O

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Zinc finger, RanBP2-type	IPR001876	-	-
Sma3	Domain of unknown function DUF59	IPR002744	-	-
Sma3	Translation elongation factor EFTu/EF1A, C-terminal	IPR004160	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G10630.2	-	46%
RefSeq	Arabidopsis thaliana	NP_196625.2	putative translation elongation factor 2EF1A / eIF-2-gamma [Arabidopsis thaliana]	46%
RefSeq	Populus trichocarpa	XP_002330811.1	predicted protein, partial [Populus trichocarpa]	50%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQJ1

Fln msg: your sequence is longer than subject: 671 - 447

Fln protein: MCGVIRNASLKGCQTAAATIKDMPKSDLLEGQIKIWRCLCCTYDNPEHISVCGICGTARKASFEESQETAPETRDIPKADRSDGNTKIWRCLSCTYDNPEHVSTCGMCRTIRSASLEESQASASGTAAMSNPASTTTKASLDITAKVEAEIVEDNAKSSKEPAPSSFIKADKHEKRENGVLWEDKSSSNGLVSEELQKQSFSPGYNFHNSNKVLKNAVPLEEYKAEPWMLHEHSEEGKNLLHLAIVGHVDAGKSTLTGKLLHLMGRVSQKEMHKYQREAKQKGKESFAYAWVLDESPEERERGVTMTVAVAHFDTAKFHVVLLDSPGHKDFVPNLIVGASQADAAVLVVDASTGAFEAGMDGQGTGGQTKEHAQLIRSFGVEQLIIAINKMDVVDYSKERFDFIKSQLGLFLRRCGFKESSLMWIPMSVIENQNLVTSASDGRLMSWYTGPHFLQSIDLFKPPTRDISRPLRLPISEVIQSRTLGQVAASGKLDAGAIKVGTKLLVMPAGEEAIVKAIEQDGNELNVAKAGDSVDIGLQGIDSLILMTGGVLCHPNFPVPVARRIELKVAVLDIKKPILFGAEVELHAHHAKEAAKIVQILAILDPKTGLVRKKAPRLLTANQSALIEVLPHRGICIEEYCNYRPLGRVTLRATGKTIAVGIVTRIIEQQ*

Protein Length: 672

Fln nts: CTTATGATTATGATGAGGACTATGCCTATGAATAGGATGACAATGAAGAATCAGCTGAATGCCATGATGTGTCACAAGTAGAGAATCTCAATAGACAAGCTGATGTTTGGCATTGCTCAATTTGCACTTACGAGAATCCAGAGAATCGTTCTGCATGTGAC_-_ATGTGTGGAGTGATTAGAAATGCTTCTCTGAAAGGTTGTCAGACGGCAGCTGCAACGATTAAAGATATGCCTAAGTCAGACCTGTTAGAGGGGCAAATCAAGATTTGGCGTTGTCTGTGTTGCACCTATGATAATCCAGAGCATATTTCTGTGTGTGGAATTTGTGGAACAGCTAGAAAAGCTTCTTTTGAAGAGTCCCAGGAAACTGCTCCAGAAACCAGAGACATACCTAAAGCAGACCGATCGGATGGAAACACCAAGATTTGGCGTTGTCTGAGTTGCACCTATGATAATCCAGAGCATGTTTCTACATGTGGCATGTGCAGAACAATTAGAAGTGCTTCCTTGGAAGAGTCTCAGGCATCTGCCTCAGGAACTGCAGCTATGTCAAATCCAGCATCTACTACAACAAAAGCTTCTTTGGATATTACCGCTAAAGTGGAGGCAGAAATAGTAGAAGATAATGCAAAAAGTTCAAAAGAACCTGCTCCTTCATCATTCATTAAAGCTGATAAACATGAGAAGAGAGAAAATGGAGTCCTTTGGGAAGATAAATCTTCTTCAAATGGACTAGTATCAGAGGAGTTGCAAAAGCAGAGCTTCAGTCCGGGTTACAATTTTCATAACAGTAACAAAGTCCTGAAGAATGCTGTTCCTCTGGAGGAGTACAAGGCTGAACCTTGGATGCTTCATGAACACAGTGAAGAGGGCAAAAACTTGCTACATCTTGCAATTGTTGGCCATGTTGATGCAGGCAAGTCAACTTTAACAGGAAAACTTCTCCATCTCATGGGTCGGGTTTCGCAGAAGGAAATGCACAAATACCAAAGAGAGGCTAAGCAGAAAGGGAAGGAATCCTTTGCATATGCATGGGTTCTAGATGAAAGTCCAGAAGAAAGGGAGAGAGGTGTAACTATGACAGTTGCTGTAGCACATTTTGACACCGCCAAATTTCATGTAGTACTTTTAGATTCTCCCGGGCACAAGGATTTTGTTCCAAACTTGATCGTTGGTGCATCTCAAGCAGATGCCGCAGTTTTAGTTGTGGATGCTTCTACAGGTGCATTTGAGGCAGGAATGGATGGGCAAGGAACAGGGGGACAGACAAAGGAGCATGCACAATTAATTAGAAGTTTTGGAGTTGAACAATTAATCATTGCTATAAATAAAATGGACGTAGTTGACTATTCTAAAGAAAGGTTTGACTTCATAAAATCACAGCTTGGGCTATTTCTTCGGCGTTGTGGTTTTAAAGAATCTTCTCTAATGTGGATTCCCATGAGCGTTATTGAAAACCAGAATTTAGTGACTAGCGCATCTGATGGCCGTCTGATGTCCTGGTATACTGGACCACATTTTTTACAGTCCATAGACCTTTTTAAGCCTCCAACTAGAGACATATCTCGTCCTCTACGGCTTCCTATCTCTGAGGTTATACAATCACGGACACTAGGTCAAGTTGCTGCCAGTGGAAAATTGGATGCAGGAGCTATTAAAGTTGGCACAAAGCTTTTAGTTATGCCTGCAGGGGAAGAAGCAATAGTGAAAGCTATTGAACAGGATGGTAACGAGCTAAATGTTGCAAAGGCTGGGGACAGCGTAGATATTGGTCTTCAAGGAATTGACTCCTTAATTCTAATGACAGGGGGAGTGCTTTGTCATCCCAATTTTCCTGTACCAGTAGCGAGACGTATTGAACTGAAGGTTGCTGTTTTGGACATCAAAAAACCAATATTATTTGGAGCGGAGGTGGAACTCCATGCACACCATGCAAAGGAGGCTGCAAAGATAGTACAGATTTTAGCCATATTGGATCCAAAAACTGGTTTAGTCCGTAAGAAGGCACCACGACTTCTAACTGCCAACCAAAGTGCTTTGATAGAGGTTTTGCCTCACCGGGGAATCTGCATCGAGGAGTACTGCAATTACAGACCCCTAGGAAGAGTCACATTGCGAGCTACTGGCAAAACTATAGCTGTGGGTATAGTCACTCGCATCATTGAACAACAGTAG___CACACCTTCCTATTACACGACTTTATTTTGCCTGAAATTTTCATAGACTATCACATAGAGAAAACCTTTTTCTCGATTTGTAGTGTAAAGACAACCATTGTATGTTAGTTATGAATTTATCACCGTCTAATTTACATATTTAATCAGGAGGGCTATAATAGCCATCAATTTTTTATCAGTAGAAGGCAGCTTCAGTCCTAAGCCAATAGCACATGAGTTCTGGAATGATTTATTAATTATAAAACAAGATACTTAGCAGATATAAATTTGCAACCAGTAATGCCCTTGAACCAAAAAAAATAGCGGTGAAAAAGA

Fln Alignment:

Contig836___KNLLHLAIVGHVDAGKSTLTGKLLHLMGRVSQKEMHKYQREAKQKGKESFAYAWVLDESPEERERGVTMTVAVAHFDTAKFHVVLLDSPGHKDFVPNLIVGASQADAAVLVVDASTGAFEAGMDGQGTGGQTKEHAQLIRSFGVEQLIIAINKMDVV--DYSKERFDFIKSQLGLFLRRCGFKESSLMWIPMSVIENQNLVTSASDGRLMSWYTGPHFLQSIDLFKPPTRDISRPLRLPISEVIQSRTLGQVAASGKLDAGAIKVGTKLLVMPAGEEAIVKAIEQDGNELNVAKAGDSVDIGLQGIDSLILMTGGVLC-HPNFPVPVARRIELKVAVLDIKKPILFGXXXXXXXXXXXXXXKIVQILAILDPKTGLVRKKAPRLLTANQSALIEVLPHRGICIEEYCNYRPLGRVTLRATGKTIAVGIVTRI
C0PQJ1_____________KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALGKFETNKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGI---SKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKRVGYNPDKIPFVPISGFEGDNMIERSNN---LDWYKGPTLLEALDQVSEPKRPTDKPLRLPLQDVYKIGGIGTVPV-GRVETGIIKPGTIVTFGPTGLTTEVKSVEMHHEALQEAYPGDNVGFNVKNVAVKDLKRGYVASDSKNDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTCHIAVKFSEIMTKVDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKAV

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
164		33		66	0.997452
202			66	33	0.997452
256	33		66		0.997452
416	42		57		1.0
419	12	50		37	1.0
421		87		12	0.992554
422		87	12		0.992554
423	87			12	0.992554
473	11			88	0.923564
475		88		11	0.923564
476	88		11		0.923564
510		12		87	0.992554
522		11		88	0.923564
534		88		11	0.923564
941	33		66		0.997452
974	75			25	0.996473
977	75		25		0.996473
1593		28		71	1.0
1736	83			16	0.999991
1831	77		22		0.999999
1968	40		60		1.0
2013	75		25		1.0
2076		66		33	1.0
2125	88	11			0.923564
2126		88	11		0.923564
2129		11	88		0.923564
2131	88			11	0.923564
2132	88			11	0.923564
2133	88		11		0.923564
2134	88		11		0.923564
2137	88		11		0.923564
2139	88	11			0.923564
2140	11		88		0.923564
2144		11		88	0.923564
2145	11		88		0.923564
2174	88	11			0.923564
2177	88	11			0.923564
2180	88			11	0.923564
2181	11	77	11		0.968132
2187		88	11		0.923564
2190	88		11		0.923564
2192		12		87	0.992554
2195	87			12	0.992554
2197	14		85		0.993533
2282	12		87		0.992554
2284			12	87	0.992554
2285	87		12		0.992554
2287		25		75	1.0
2413	50		50		1.0
2448	22		77		0.999999
2462	14	85			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain