SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene827

Length: 2380 nt

UniGene Fasta

>sp_v3.0_unigene827
AGACAGCACAAATCAAAGCCGAGCAACGGTCCAAAGAGACTCCGACAGACTTGAGCACCGTCAGATGGGCGGAAAACCCATTTCTGCAAAGTCACGGGACTCTGAATCCGACGACAGACCCAATAAATTAAGTTGCTTTCGATTTCAATTATTGATTTCTGTGAAATAATTAACAAGTTTACTTCATAAATCCACGCTAGATTGTACTCAAATTGCCTGCTTGTTCCACCCAAGGCCAGCGTTCCCCGTTCTGTTCAATGAGGTAGATCCAATGGCAGAGCTGCAGATTTTCACTGGGGGCACTGAATTCCTGAAAAAACTGCAACGGATCTGCATGATGTGTGTAGCTCCCGTGTCAGAAAACAGGACTCGAAGACATGGTCACATGGAGATGGGCGCTTAGTTCGCTTAGAGAAGGAGCTTATTGGGCCGTGTTGTAGGCTTTTCCAGGAGAAGAAATCATGGAACTCTGTTGTGAGCATGTCACGGCATTACCGTTCATCTACTAGTCTAAACGCAGATTTTGAGAGCCCATTTGCTGTGAGTATGTGACCACATTGTCATTGATCTTTAAACCCAAACCCAGATTACAAGGGTACATTTGCTGTCAGCATGTGACCACATTGGCATTCATCGACAAGCCCAATCTCCGGTATTAAGAACCCATCTAATGTGAGATCTATGTTTATGTGCAGTATATGTTAGACCCACTTTTGCAGTGACTGCAATGGTGTGTTGTTGTGTGAGCAACGCTGCTGTGTGGTTGGTGCAACAGTGTAGCTTGGAGGTATGAACAGGGGAGGATGCATTTGGATTGAGATTGATCATGGGAAACTGTGGAACAAGAGAGGAGTCTGCTGTCACCAGTATTGTTCCCATAGCTAAACCAGGCACGTTCCAGACACAGCCGGTACTATTAGCACAACAAGAACAGCAACGCAAGAAAGAACAGCAAGACCCATCTCCTGCAATAGGCAGAAAGCCCACCCCGGTTAAGAGACTATCCTTGTCTTCATCAGATCTGAGCAATCCATCAACTCCCAGGGCTGTAGAAGACCTGAGACAGGACTCTGGATCCAACGTGCTGGTTTTCACATTGTTTGAACTGGAGATCATCACCAAAAGTTTCCGTTCCGATTATATTTTGGGGGAAGGAGGCTTTGGAACTGTATATAAAGGTTATGTAGATGAGAATGTCAGAGCAGGCCTCAAACCTCTGCCTGTTGCAGTGAAGGTTCTCAACAAAAATGGTTTTCAAGGCCACAGGGAATGGCTGACGGAAGTTATTTTTCTGGGACAGCTGAGTCATCCCCATTTGGTTAAACTGATAGGTTACTGTTGCGAGGATGACCATAGATTGCTGGTTTATGAGTTCATGTTTCGGGGCAGTCTCGAGAATCATCTATTTCGGAAGGCATCTGTTCCTTTGCCTTGGTCTACAAGGATGATGATTGCACTTGGGGCTGCGAAAGGGCTTGCTTTTCTTCATGGAGCAGAGAAACCAGTTATCTATAGAGATTTCAAAACATCCAACATTTTATTGGATTCGGACTATACAGCTAAGCTATCTGATTTTGGACTTGCAAAAGATGGACCTCAGGGAGATGAAACTCATGTTTCGACCCGGGTCATGGGGACATATGGTTATGCAGCTCCTGAATATGTTATGACGGGGCATTTGACGGCTAGAAGTGATGTCTACAGCTTTGGTGTAGTGCTCCTTGAGCTGCTTACTGGAAGACGGTCTGTGGATAAGACTAGACCAAACAGAGAACACAACCTGGTAGATTGGGCTCGTCCACTTCTAAATGATAAGCGGAGGTTGCTGCAGATTATTGATCCTAGGCTGCAAGAACAGTATTCCATGAAAGGTGCCCAGAAAGCTTGTAGCTTGGCCTATCACTGCCTTAACCAAAATCCCAAGGCAAGGCCTCTCATGAGTGATGTTGTTGAAACATTGGAACCTCTACAAAATAGGAAGGATATGGCAAATGCTTCCTTAATGTATACTTTGAATAATGGGATAGCAGCATATAAGATACAGAATCGTTTGAAAGAGAATGGTAGTAACATCACTGGTTGTCATGTTCATCATAATAATGCTCCTGCTCCTAGAGATGGACCTGCTGTCTGCAGGGTTAGGTAATGGTGATTTAAATCTGTACAATGAATCTTCAAGGCATCCATGAACAGAAGTGGAATTTTCTTGGACTTGAAATCCATTATTCTTGTCTTGAAAGGGTGATCCAAATCTGTACAGTCTCTGTGAGTTCCTGTAATAAAAGAGTCATTCCTATCTAATAGTGCCATTTTCACAAAATACTAGTAGTTTGTAATGGCTTTGAAGATGTACATAGCTTTATTCTCTTTTGGTTCTTTG

Ace file of the UniGene sp_v3.0_unigene827

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase family protein [Arabidopsis thaliana] sp\|Q8GXZ3.1\|Y5102_ARATH RecName: Full=Serine/threonine-protein kinase At5g01020 dbj\|BAC42590.1\| putative protein kinase [Arabidopsis thaliana] gb\|AED90288.1\| protein kinase family protein [Arabidopsis t	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G01020.1	Protein kinase superfamily protein chr5:6309-8270 REVERSE LENGTH=410	67%
RefSeq	Arabidopsis thaliana	NP_195722.2	protein kinase family protein [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002323108.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKU3

Fln msg:

Fln protein: MGNCGTREESAVTSIVPIAKPGTFQTQPVLLAQQEQQRKKEQQDPSPAIGRKPTPVKRLSLSSSDLSNPSTPRAVEDLRQDSGSNVLVFTLFELEIITKSFRSDYILGEGGFGTVYKGYVDENVRAGLKPLPVAVKVLNKNGFQGHREWLTEVIFLGQLSHPHLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKASVPLPWSTRMMIALGAAKGLAFLHGAEKPVIYRDFKTSNILLDSDYTAKLSDFGLAKDGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRRSVDKTRPNREHNLVDWARPLLNDKRRLLQIIDPRLQEQYSMKGAQKACSLAYHCLNQNPKARPLMSDVVETLEPLQNRKDMANASLMYTLNNGIAAYKIQNRLKENGSNITGCHVHHNNAPAPRDGPAVCRVR*

Protein Length: 441

Fln nts: AGACAGCACAAATCAAAGCCGAGCAACGGTCCAAAGAGACTCCGACAGACTTGAGCACCGTCAGATGGGCGGAAAACCCATTTCTGCAAAGTCACGGGACTCTGAATCCGACGACAGACCCAATAAATTAAGTTGCTTTCGATTTCAATTATTGATTTCTGTGAAATAATTAACAAGTTTACTTCATAAATCCACGCTAGATTGTACTCAAATTGCCTGCTTGTTCCACCCAAGGCCAGCGTTCCCCGTTCTGTTCAATGAGGTAGATCCAATGGCAGAGCTGCAGATTTTCACTGGGGGCACTGAATTCCTGAAAAAACTGCAACGGATCTGCATGATGTGTGTAGCTCCCGTGTCAGAAAACAGGACTCGAAGACATGGTCACATGGAGATGGGCGCTTAGTTCGCTTAGAGAAGGAGCTTATTGGGCCGTGTTGTAGGCTTTTCCAGGAGAAGAAATCATGGAACTCTGTTGTGAGCATGTCACGGCATTACCGTTCATCTACTAGTCTAAACGCAGATTTTGAGAGCCCATTTGCTGTGAGTATGTGACCACATTGTCATTGATCTTTAAACCCAAACCCAGATTACAAGGGTACATTTGCTGTCAGCATGTGACCACATTGGCATTCATCGACAAGCCCAATCTCCGGTATTAAGAACCCATCTAATGTGAGATCTATGTTTATGTGCAGTATATGTTAGACCCACTTTTGCAGTGACTGCAATGGTGTGTTGTTGTGTGAGCAACGCTGCTGTGTGGTTGGTGCAACAGTGTAGCTTGGAGGTATGAACAGGGGAGGATGCATTTGGATTGAGATTGATC_-_ATGGGAAACTGTGGAACAAGAGAGGAGTCTGCTGTCACCAGTATTGTTCCCATAGCTAAACCAGGCACGTTCCAGACACAGCCGGTACTATTAGCACAACAAGAACAGCAACGCAAGAAAGAACAGCAAGACCCATCTCCTGCAATAGGCAGAAAGCCCACCCCGGTTAAGAGACTATCCTTGTCTTCATCAGATCTGAGCAATCCATCAACTCCCAGGGCTGTAGAAGACCTGAGACAGGACTCTGGATCCAACGTGCTGGTTTTCACATTGTTTGAACTGGAGATCATCACCAAAAGTTTCCGTTCCGATTATATTTTGGGGGAAGGAGGCTTTGGAACTGTATATAAAGGTTATGTAGATGAGAATGTCAGAGCAGGCCTCAAACCTCTGCCTGTTGCAGTGAAGGTTCTCAACAAAAATGGTTTTCAAGGCCACAGGGAATGGCTGACGGAAGTTATTTTTCTGGGACAGCTGAGTCATCCCCATTTGGTTAAACTGATAGGTTACTGTTGCGAGGATGACCATAGATTGCTGGTTTATGAGTTCATGTTTCGGGGCAGTCTCGAGAATCATCTATTTCGGAAGGCATCTGTTCCTTTGCCTTGGTCTACAAGGATGATGATTGCACTTGGGGCTGCGAAAGGGCTTGCTTTTCTTCATGGAGCAGAGAAACCAGTTATCTATAGAGATTTCAAAACATCCAACATTTTATTGGATTCGGACTATACAGCTAAGCTATCTGATTTTGGACTTGCAAAAGATGGACCTCAGGGAGATGAAACTCATGTTTCGACCCGGGTCATGGGGACATATGGTTATGCAGCTCCTGAATATGTTATGACGGGGCATTTGACGGCTAGAAGTGATGTCTACAGCTTTGGTGTAGTGCTCCTTGAGCTGCTTACTGGAAGACGGTCTGTGGATAAGACTAGACCAAACAGAGAACACAACCTGGTAGATTGGGCTCGTCCACTTCTAAATGATAAGCGGAGGTTGCTGCAGATTATTGATCCTAGGCTGCAAGAACAGTATTCCATGAAAGGTGCCCAGAAAGCTTGTAGCTTGGCCTATCACTGCCTTAACCAAAATCCCAAGGCAAGGCCTCTCATGAGTGATGTTGTTGAAACATTGGAACCTCTACAAAATAGGAAGGATATGGCAAATGCTTCCTTAATGTATACTTTGAATAATGGGATAGCAGCATATAAGATACAGAATCGTTTGAAAGAGAATGGTAGTAACATCACTGGTTGTCATGTTCATCATAATAATGCTCCTGCTCCTAGAGATGGACCTGCTGTCTGCAGGGTTAGGTAA___TGGTGATTTAAATCTGTACAATGAATCTTCAAGGCATCCATGAACAGAAGTGGAATTTTCTTGGACTTGAAATCCATTATTCTTGTCTTGAAAGGGTGATCCAAATCTGTACAGTCTCTGTGAGTTCCTGTAATAAAAGAGTCATTCCTATCTAATAGTGCCATTTTCACAAAATACTAGTAGTTTGTAATGGCTTTGAAGATGTACATAGCTTTATTCTCTTTTGGTTCTTTG

Fln Alignment:

Contig827___MGNCGTREESAVTSIVPIAKPGTFQTQPVLLAXXXXXXXXXXX-DPSPAIGRKPTPVKRXXXXXXXXXNPSTPRAVEDLRQDSGSNVLVFTLFELEIITKSFRSDYILGEGGFGTVYKGYVDENVRAGLKPLPVAVKVLNKNGFQGHREWLTEVIFLGQLSHPHLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKASVPLPWSTRMMIALGAAKGLAFLHGAEKPVIYRDFKTSNILLDSDYTAKLSDFGLAKDGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRRSVDKTRPNREHNLVDWARPLLNDKRRLLQIIDPRLQEQYSMKGAQKACSLAYHCLNQNPKARPLMSDVVETLEPLQNRKDMANASLMYTLNNGIAAYKIQNRLKENGSNITGCHVHHNNAPAPRDGPAVCRVR
B8LKU3_____________MGNCGTREESAVTSVVPIAKPGTVQTQPVPLAHKQEQQRKKEQQDPSPAISRKPTPVKRLSLSSSDLSNPSTPRAVEDLRQDSGSNVLVFTLFELEIITKSFRSDYILGEGGFGTVYKGYIDENVRAGLKPLPVAVKVLNKNGFQGHREWLTEVIFLGQLSHPHLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKAAVPLPWSTRMMIALGAAKGLAFLHGAEKPVIYRDFKTSNILLDSDYAAKLSDFGLAKDGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRRSVDKTRPNREHNLVDWARPLLNDKRRLLQIIDPRLEGQYSMKGAQKACSLAYHCLNQNPKARPLMGDVVETLEPLQNRKDMVNASLMYTLNNGIAAYKMQNRLKENGSNINGCHVHNNNSPAPRDGPAVCRVR

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
362	85		14		0.993533
525	10		90		0.90298
526	90			10	0.90298
528		90		10	0.90298
682			16	83	0.999991
683			16	83	0.999991
684			25	75	1.0
733		11		88	0.999952
940		14	85		0.993533
2300		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain