SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene813

Length: 1775 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene813

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	F-box/WD-40 repeat-containing protein [Arabidopsis thaliana] sp\|Q9SV01.2\|FBW4_ARATH RecName: Full=F-box/WD-40 repeat-containing protein At3g52030 gb\|AEE78876.1\| F-box/WD-40 repeat-containing protein [Arabidopsis thaliana]	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pyrrolo-quinoline quinone beta-propeller repeat	IPR018391	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002314059.1	predicted protein [Populus trichocarpa]	0.0	46%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX76

Fln msg:

Fln protein: MDSEEAKEKNSKGTISVHKRRKRASTINDIGSDLLIKIFGYLDTLDVVRTSAVTKSWYSIIQRSSLWRDAYCKQRHSLINHFKEGFLPETPPKDWVRQLVRQQHGAALVHGSVQVSCWKGHSTGVNCCRMQMGSILTGVGDQIARIWCSKSLRCVEEYSTPNKASLVDLDFDKCKIVGLVGGDICIWKRHGNSHLLRPRGGPIQRAHCLCYADPEAAIGCGDGTIRIFDMYSSQCSRIFRQHGGAVTCLSIVDEEFLISGTSLGSLSVSDAASGQKIASLRHSTAVTGISCLWVNQGSFQVFSGTTSGHAYSWDLRMYKPLWETRVSPSVIYSMHSQAIDSSTLVVGGIDGVLRIIDANSGQILSSYVATAKMTSISDGMIAKCTAKKVSSPLDKIPKSLRRPITCVAVGLNKVVTVHNDKNIMLWTFQRENV*

Protein Length: 435

Fln nts: CAAAACCAGATCTGTTCACTCTCGCGGGGGGACAAATTCTGCTGTCCAAAACAAGGGGGCGGTCCCTCCGCTCTCCCATGCCCAGTCGTTTATACCCATCGCCAGAAA_-_ATGGACAGCGAGGAGGCCAAAGAGAAGAACAGTAAGGGGACCATTTCAGTCCACAAGAGAAGAAAACGGGCTAGTACCATCAACGACATTGGGTCCGACTTGCTAATTAAAATCTTTGGATATTTGGATACCCTGGATGTTGTCCGCACCTCTGCAGTCACCAAATCTTGGTATAGTATTATCCAAAGATCTTCTTTATGGAGGGATGCATATTGTAAGCAAAGACATTCACTTATCAATCATTTCAAAGAAGGGTTCCTGCCTGAAACACCACCAAAAGACTGGGTCAGACAGCTTGTCAGACAGCAGCATGGGGCAGCACTGGTTCATGGTTCTGTTCAAGTTTCATGTTGGAAAGGCCATTCTACTGGAGTGAACTGTTGTCGAATGCAAATGGGATCAATTTTAACTGGTGTTGGTGATCAGATAGCACGGATTTGGTGCTCGAAGAGTCTTCGTTGTGTGGAGGAATACTCAACTCCAAATAAGGCTTCTTTGGTTGACCTGGACTTTGACAAGTGCAAGATTGTAGGGCTTGTTGGAGGAGACATTTGCATTTGGAAGCGTCATGGGAATAGTCATTTGCTTCGTCCCCGTGGTGGACCTATTCAACGTGCACACTGTTTATGTTATGCAGACCCAGAAGCAGCTATTGGATGTGGGGATGGTACAATTCGCATATTTGACATGTACAGCAGTCAATGCTCTCGTATATTCAGGCAGCATGGTGGTGCTGTGACTTGTCTCTCCATAGTTGATGAGGAGTTCTTAATCAGTGGTACTTCCCTTGGGTCTCTGTCTGTCTCTGATGCAGCTTCTGGGCAGAAAATAGCATCTCTTAGACATTCAACTGCAGTTACAGGTATAAGCTGTCTTTGGGTAAACCAAGGTTCTTTTCAAGTTTTTTCAGGAACAACATCTGGCCATGCATACAGTTGGGATTTACGGATGTACAAGCCACTGTGGGAGACACGAGTAAGCCCCAGCGTGATATATTCTATGCATTCTCAAGCGATAGATTCATCAACACTAGTGGTAGGTGGAATCGATGGTGTTTTACGGATAATTGATGCTAATAGTGGCCAGATCCTTTCCAGCTATGTGGCAACAGCAAAAATGACTAGTATTTCTGATGGGATGATTGCCAAATGCACTGCTAAGAAAGTTAGTTCCCCACTAGATAAAATACCAAAGAGTTTACGACGCCCAATAACATGTGTTGCTGTTGGATTGAACAAGGTTGTGACTGTTCATAATGATAAGAACATAATGTTGTGGACCTTCCAAAGGGAGAATGTTTGA___TAGTAATTCATATTAGGTTCCTGTGCAGCCCTCCTACCTGGCTGGTGCAATTTGTGGTAGAAATGAATCAATTCACTTGTAACATTTTTTCATTTTGTATTCTTATTGAAATTGGGAATTCTGTGGCAATTCTTGTCAGGCATTTATTTATGTAACACTTCAAATATCAAAGCGATGAGATCGATTACTGCTTTTATCTCTCCTGCACACCATACCAGATCACAAAGATGGTATTAAACCTAGGACACTGCTTGTTAGCTAGCATGCTAGAGCTTTATCTTAAACATTTAATTTGAGCTCCTGCAAGACTTATTATGTAATACTTTCATGATGTTGAGTTTTTTCATTGACATCACTAATGAGTA

Fln Alignment:

Contig813___MDSEEAKEKNSKGTISVHKRRKRASTINDIGSDLLIKIFGYLDTLDVVRTSAVTKSWYSIIQRSSLWRDAYCKQRHSLINHFKEGFLPETPPKDWVRQLVRQQHGAALVHGSVQVSCWKGHSTGVNCCRMQMGSILTGVGDQIARIWCSKSLRCVEEYSTPNKASLVDLDFDKCKIVGLVGGDICIWKRHGNSHLLRPRGGPIQRAHCLCYADPEAAIGCGDGTIRIFDMYSSQCSRIFRQHGGAVTCLSIVDEEFLISGTSLGSLSVSDAASGQKIASLRHSTAVTGISCLWVNQGSFQVFSGTTSGHAYSWDLRMYKPLWETRVSPSVIYSMHSQAIDSSTLVVGGIDGVLRIIDANSGQILSSYVATAKMTSISDGMIAKCTAKKVSSPLDKIPKSLRRPITCVAVGLNKVVTVHNDKNIMLWTFQRENV
A9NX76_____________MESEEAKEKNSKAIKRVPKRRKRASTIDDIGPDLLLRIFGCLDPLDLVRTSAVTKSWYSIIQRSSLWRDAYYKQRHSLTNHFKQGFLPEMPPKDWVRQLVSQQHRAALVHGSVQVHCWKGHSIGVNCCRMQMGSILTGVGDQTARIWCSKSFHCLEEYSTPSKAALVDLDFDESKIVGLVGGDICIWKRHGSSHMLRPRGGPIQHAHCLCYADPEAAIGCRDGTIRIFDMYSNQCSRIFRQHGGAVTCLSIVDEQLLISGTSLGCLSVSDAASGQKIASLRQSTAVTGISCLWVNQGSSQVFSGTTSGHAYSWDLRMYRPLWETRVSPSVIYSMHSQAIDSSTLVLGGIDGVLRIIDANNGQILSSYVATAKMANISDGMIAKCTAKKVSSPLDKIPKSLRRPITCVAIGLNKVVTVHNDKNIMLWTFQRKNV

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1019		83		16	0.994512
1022			83	16	0.994512
1023	83			16	0.994512
1024	83		16		0.994512
1025		83	16		0.994512
1026	83		16		0.994512
1457		11	88		0.923564
1493	11			88	0.923564
1512	83		16		0.994512
1663	33		66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain