SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene803

Length: 3421 nt

UniGene Fasta

>sp_v3.0_unigene803
GAAAATTGGATTTGCACACAAATTCGGATTTGAAACCACCATTTGGTTTTTATTTAATTTTGCGCCACCTAAAACGCCATTATCGCAGTACTGAGTAATTGAGAATTAGCCATATATATTAATTTTGACTGAATCAGCCGCTGGATTGTCCAATTTAAGCAATTCAATTCAAGTTAGCTGCTCTTCTGGATCCACATTATTACGGCTCACATTTGTTCTGGCATAAATTTGAGCGATTTTGCGGAACTCTTTTTTATTTTGATTGTAAGATTTCGACAGGAAAAGGGAACCGGGGACCGTTAGCGGACATTTATGTATTTATAAACCCTTAGGGTTGCCTGGGCTTGATTTCGGCTCTAGAATTTCGCTCGGACTGATCCTTTCTAAGCTGGAATTATTTTAGGGTTGATTCGATAATATGCCCAATTTACTTGTTGGCATTGGCGTCGTTTTAAGGTGTCTGGTATCTACTTAATTTTGTTCCACGTTGGGGAAGATCGGGTCTGCTTTCGTATATCAGTTGGTAGCTTGCTTCAATCTCTTGGACCAGAGTGTGAAAAAGATATGCTAGATAGGTCTCACTGTAAGTGCAAAACCTTTTCTTAATTGATGGGCAGGCTAAGAGAATTCAGATAGGCATCTCCGTTATTCCAGGTGGAAGTTGCAGTCATCTGGTTTATTTTTTAGTGTAGAGAGATGCGGAGCCCCCTGGGGAAGATTGGGGCTCTTTCTCAAAAGATAAACCCCTTGGTATTGTCACAAAATCATCTTCGTCATGCTTTATCTGAACCACAGAGGACTAATGTTTCTCCTCAGGTGACTTCTGGGCAGAATTCTTCTCCAGTAACTGGTCGTGAAAAGCGAGGCAGAGTCAAATCCTCCAAGACAGATGAATTCAATGTGTCAGTTGAGAATTCAGAGCATGTAAATGGACGTGAGCACAGGATTGATATTGGAGATGAGAGTTCTGATCTATTGGGACAACTTTTGGTTTCTGGAAAGCTGGTCCCTGATAAGAAAAAATCGAGTACAAGCCTTGATAGCCAAACTAAGAAATCAAATACAACCAAGGCTGAGGTCAATGCAAAGCTTACCATCAAGGTTTTTGTTTGGGATACACACCGCCTTAGCCTTGGTGACATCATTGCTGTTTCATACAGTGATGGACTTAGACGTTTCACAGTGCATTCTTATCCACTCGTAAAGAGATCATGGGTGCCATCGTCATTAATAAAATCTGAGAGAAGGCGGAAGGATCTTCATTTCTTGGCGTCAACTCCTGATGACGCACTACGGTGGGTCTCTGCATTTGCAGAGCTGCAGTGTTTTGTGAATTGCTTGCCACATCCTTTGAAGCAACAGGGATCAGTTGATTCAAGAGATTTTCAACCGGGACAGCCAGTTAAATGTAAAAGTCCTCCTGCTATGCGTGTCATACTTAATCCTCGTTCAGGACGAGGTCGTTCAAGCAAGGTTTTCTATGGCAAAGTGGAACCAATATTGAAGCTTGCAGGTTTCAAGCTTGAGGTAGTTGAAACCGAATCTGCGGGTCATGCACGCACGTTGGCCAGAACAGTTGATCTCAATACTTGTCGTGATGGTATCATATGTGTTGGTGGAGATGGAATTGTAAATGAGGTACTTAATGGTTTGATTAGCAGAGATGACCCAAAGGAGGCAATGACGGTTCCAATAGGCATCATTCCTGCAGGTTCTGATAACTCACTTGTGTGGACAGTGTTGGGAGTCAGAGATCCTATTTCGGCTGCAGTGGCTATTGTAAAGGGAGGCTTAACAGCCACAGATGTCTTTGCAGTTGAGTGGATTGAGACTGGTGCTATTCATGCAGGTCTCACGGTTGCATACTATGGATTTGTGAGTGATGTTTTAGAACTCTCAGAGAAGTACCAAAAACGTTTTGGTCCATTACGGTACTTTGTGGCTGGTGCTCTTAAAATCCTTTGCTTGCCAAAGTATAACTATGAAGTTGAGTATTTACCTGTACCAGAGCCAACAACCAATATTGGCAGCACAGGTGCAAGTTGGGGGTGCATGGTAGATGCTGCTGAGAATCATGCTGAAAATCATGGGAGAAAATCAAACATTGAAGGATTACCAAGAGCTTCAAGTTTGTCAAGCATTGATTCAATTTTGATGACACCAAGCCGAATGTCAGGAGACCTTGATGTGATCACAGGTAGCACATATGCAAGCAGTGAGCCATCTGACTATGTGCGGGGTATAGATGCCAAAACCAAACGTTTATCCTCTGGGAGAAATAACCTTGTTCCAGAACCTGAAGAAGTTGTTCACCCTTCATTGCCTGGACCTGCAACTCCTAGTAGGCCCCGAACAAGATCTAAGTCTCGTACAGATAAGGGATGGAGTGGACTAAGCACTACAAATGATTGTTCCAGAGGATCATGGGCAACCCATGTGGTGGTTGACAGGGAGGATATATCCTCTACCATGTCTGACCCTGGTCCAATATGGGACAGTGAACCTAGATGGGATGAAGGACCAAAATGGGATGCAGAACCAAAATGGGATGCTGAGAATAACTTTGGGATGAAAGGGCCTGTAGATGAAATGCTCACAAAGTCAAATCAAAATGGACTAAAGGTAGAAGAGGAAAAATGGGTTGTCAGAAAAGGACCGTTTCTTGGTATATTGATATGTAACCACCCATGCAAGACGGTGCAGAGCTTAAAATCACAAGTGCTTGCTCCGAGAGCTGAGCATGATGATAATAGTTTGGACATCATGTTGGTTCGTGGTGGGGGAAGGTTGCAACTCCTACGATTCTTTGTGTTAATGCAGTTTGGGCGTCATCTCTCTCTTCCATTTGTAGAGTATACCAAGGTGAAGTCAGTAAAGCTTAAACCAGGTAAAAATGGTCACAAGGGATGTGGGATAGATGGTGAGCTTCTACATGTTAACGGGCCTGTTTCAACTTCTTTGCTTCCTGAGCAGTGCAAGCTTATTGGTCGTCCTGTACGACATTCGGTATAATCTTACATGTGGGCATTCCATTGCTGTATTATGCGATGATGAGCATTGTTTTTGATAAACAAACTTATAACTGTATTGTAATTTTTACAAGTATTTTTTGTATTCCTTGTCTTCGACTGCCTCCAAGAATGGATATTTTTCATACAACGGCAGTATGCACACTGAAGATTTTGTATTTTTTCCGCTACAGCACTTTTTGGATTTCCTTAGCACGTAAGTTATTCTTACATGTGCGTGGCAGAGGTTGTCCGACTATGGGTATTTCCCCTACCAGAATGTACTGTAAAAAGCCTTGTGTAATTCATCTACAATTGTATTTTAAACATTTTTTTGGGTACTTTCAGTTCTGTAAAGTTGTTCTATTTTTTTCCATTGAAATAATTGGCCTGGAAGAGAAGTTTGTACAGTG

Ace file of the UniGene sp_v3.0_unigene803

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sphingosine kinase n=1 Tax=Lotus japonicus RepID=Q5KR50_LOTJA	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%

Source	Gene names
Sma3	AT5G23450; At5g23450; GSVIVT00003981001; GSVIVT00008144001; GSVIVT00010197001; GSVIVT00012053001; GSVIVT00034792001; H0501D11.3; K19M13.8; LCBK1; LOC_Os10g37280; LjLCBK1; OJ1349_D05.118; OSJNBa0076F20.14; OSJNBb0103I08.5; Os04g0541500; Os08g0152700; Os10g

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	diacylglycerol kinase activity	GO:0004143	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	D-erythro-sphingosine kinase activity	GO:0017050	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	GO:0007205	Biological Process	-
Sma3	sphingolipid biosynthetic process	GO:0030148	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Diacylglycerol kinase, catalytic domain	IPR001206	-	-
Sma3		IPR015706	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G23450.3	ATLCBK1, LCBK1 long-chain base (LCB) kinase 1 chr5:7905041-7908960 REVERSE LENGTH=778	55%
RefSeq	Arabidopsis thaliana	NP_851065.1	Sphingoid long-chain bases kinase 1 [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002310911.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AE66

Fln msg: your sequence is longer than subject: 772 - 285

Fln protein: MRSPLGKIGALSQKINPLVLSQNHLRHALSEPQRTNVSPQVTSGQNSSPVTGREKRGRVKSSKTDEFNVSVENSEHVNGREHRIDIGDESSDLLGQLLVSGKLVPDKKKSSTSLDSQTKKSNTTKAEVNAKLTIKVFVWDTHRLSLGDIIAVSYSDGLRRFTVHSYPLVKRSWVPSSLIKSERRRKDLHFLASTPDDALRWVSAFAELQCFVNCLPHPLKQQGSVDSRDFQPGQPVKCKSPPAMRVILNPRSGRGRSSKVFYGKVEPILKLAGFKLEVVETESAGHARTLARTVDLNTCRDGIICVGGDGIVNEVLNGLISRDDPKEAMTVPIGIIPAGSDNSLVWTVLGVRDPISAAVAIVKGGLTATDVFAVEWIETGAIHAGLTVAYYGFVSDVLELSEKYQKRFGPLRYFVAGALKILCLPKYNYEVEYLPVPEPTTNIGSTGASWGCMVDAAENHAENHGRKSNIEGLPRASSLSSIDSILMTPSRMSGDLDVITGSTYASSEPSDYVRGIDAKTKRLSSGRNNLVPEPEEVVHPSLPGPATPSRPRTRSKSRTDKGWSGLSTTNDCSRGSWATHVVVDREDISSTMSDPGPIWDSEPRWDEGPKWDAEPKWDAENNFGMKGPVDEMLTKSNQNGLKVEEEKWVVRKGPFLGILICNHPCKTVQSLKSQVLAPRAEHDDNSLDIMLVRGGGRLQLLRFFVLMQFGRHLSLPFVEYTKVKSVKLKPGKNGHKGCGIDGELLHVNGPVSTSLLPEQCKLIGRPVRHSV*

Protein Length: 773

Fln nts: GAAAATTGGATTTGCACACAAATTCGGATTTGAAACCACCATTTGGTTTTTATTTAATTTTGCGCCACCTAAAACGCCATTATCGCAGTACTGAGTAATTGAGAATTAGCCATATATATTAATTTTGACTGAATCAGCCGCTGGATTGTCCAATTTAAGCAATTCAATTCAAGTTAGCTGCTCTTCTGGATCCACATTATTACGGCTCACATTTGTTCTGGCATAAATTTGAGCGATTTTGCGGAACTCTTTTTTATTTTGATTGTAAGATTTCGACAGGAAAAGGGAACCGGGGACCGTTAGCGGACATTTATGTATTTATAAACCCTTAGGGTTGCCTGGGCTTGATTTCGGCTCTAGAATTTCGCTCGGACTGATCCTTTCTAAGCTGGAATTATTTTAGGGTTGATTCGATAATATGCCCAATTTACTTGTTGGCATTGGCGTCGTTTTAAGGTGTCTGGTATCTACTTAATTTTGTTCCACGTTGGGGAAGATCGGGTCTGCTTTCGTATATCAGTTGGTAGCTTGCTTCAATCTCTTGGACCAGAGTGTGAAAAAGATATGCTAGATAGGTCTCACTGTAAGTGCAAAACCTTTTCTTAATTGATGGGCAGGCTAAGAGAATTCAGATAGGCATCTCCGTTATTCCAGGTGGAAGTTGCAGTCATCTGGTTTATTTTTTAGTGTAGAGAG_-_ATGCGGAGCCCCCTGGGGAAGATTGGGGCTCTTTCTCAAAAGATAAACCCCTTGGTATTGTCACAAAATCATCTTCGTCATGCTTTATCTGAACCACAGAGGACTAATGTTTCTCCTCAGGTGACTTCTGGGCAGAATTCTTCTCCAGTAACTGGTCGTGAAAAGCGAGGCAGAGTCAAATCCTCCAAGACAGATGAATTCAATGTGTCAGTTGAGAATTCAGAGCATGTAAATGGACGTGAGCACAGGATTGATATTGGAGATGAGAGTTCTGATCTATTGGGACAACTTTTGGTTTCTGGAAAGCTGGTCCCTGATAAGAAAAAATCGAGTACAAGCCTTGATAGCCAAACTAAGAAATCAAATACAACCAAGGCTGAGGTCAATGCAAAGCTTACCATCAAGGTTTTTGTTTGGGATACACACCGCCTTAGCCTTGGTGACATCATTGCTGTTTCATACAGTGATGGACTTAGACGTTTCACAGTGCATTCTTATCCACTCGTAAAGAGATCATGGGTGCCATCGTCATTAATAAAATCTGAGAGAAGGCGGAAGGATCTTCATTTCTTGGCGTCAACTCCTGATGACGCACTACGGTGGGTCTCTGCATTTGCAGAGCTGCAGTGTTTTGTGAATTGCTTGCCACATCCTTTGAAGCAACAGGGATCAGTTGATTCAAGAGATTTTCAACCGGGACAGCCAGTTAAATGTAAAAGTCCTCCTGCTATGCGTGTCATACTTAATCCTCGTTCAGGACGAGGTCGTTCAAGCAAGGTTTTCTATGGCAAAGTGGAACCAATATTGAAGCTTGCAGGTTTCAAGCTTGAGGTAGTTGAAACCGAATCTGCGGGTCATGCACGCACGTTGGCCAGAACAGTTGATCTCAATACTTGTCGTGATGGTATCATATGTGTTGGTGGAGATGGAATTGTAAATGAGGTACTTAATGGTTTGATTAGCAGAGATGACCCAAAGGAGGCAATGACGGTTCCAATAGGCATCATTCCTGCAGGTTCTGATAACTCACTTGTGTGGACAGTGTTGGGAGTCAGAGATCCTATTTCGGCTGCAGTGGCTATTGTAAAGGGAGGCTTAACAGCCACAGATGTCTTTGCAGTTGAGTGGATTGAGACTGGTGCTATTCATGCAGGTCTCACGGTTGCATACTATGGATTTGTGAGTGATGTTTTAGAACTCTCAGAGAAGTACCAAAAACGTTTTGGTCCATTACGGTACTTTGTGGCTGGTGCTCTTAAAATCCTTTGCTTGCCAAAGTATAACTATGAAGTTGAGTATTTACCTGTACCAGAGCCAACAACCAATATTGGCAGCACAGGTGCAAGTTGGGGGTGCATGGTAGATGCTGCTGAGAATCATGCTGAAAATCATGGGAGAAAATCAAACATTGAAGGATTACCAAGAGCTTCAAGTTTGTCAAGCATTGATTCAATTTTGATGACACCAAGCCGAATGTCAGGAGACCTTGATGTGATCACAGGTAGCACATATGCAAGCAGTGAGCCATCTGACTATGTGCGGGGTATAGATGCCAAAACCAAACGTTTATCCTCTGGGAGAAATAACCTTGTTCCAGAACCTGAAGAAGTTGTTCACCCTTCATTGCCTGGACCTGCAACTCCTAGTAGGCCCCGAACAAGATCTAAGTCTCGTACAGATAAGGGATGGAGTGGACTAAGCACTACAAATGATTGTTCCAGAGGATCATGGGCAACCCATGTGGTGGTTGACAGGGAGGATATATCCTCTACCATGTCTGACCCTGGTCCAATATGGGACAGTGAACCTAGATGGGATGAAGGACCAAAATGGGATGCAGAACCAAAATGGGATGCTGAGAATAACTTTGGGATGAAAGGGCCTGTAGATGAAATGCTCACAAAGTCAAATCAAAATGGACTAAAGGTAGAAGAGGAAAAATGGGTTGTCAGAAAAGGACCGTTTCTTGGTATATTGATATGTAACCACCCATGCAAGACGGTGCAGAGCTTAAAATCACAAGTGCTTGCTCCGAGAGCTGAGCATGATGATAATAGTTTGGACATCATGTTGGTTCGTGGTGGGGGAAGGTTGCAACTCCTACGATTCTTTGTGTTAATGCAGTTTGGGCGTCATCTCTCTCTTCCATTTGTAGAGTATACCAAGGTGAAGTCAGTAAAGCTTAAACCAGGTAAAAATGGTCACAAGGGATGTGGGATAGATGGTGAGCTTCTACATGTTAACGGGCCTGTTTCAACTTCTTTGCTTCCTGAGCAGTGCAAGCTTATTGGTCGTCCTGTACGACATTCGGTATAA___TCTTACATGTGGGCATTCCATTGCTGTATTATGCGATGATGAGCATTGTTTTTGATAAACAAACTTATAACTGTATTGTAATTTTTACAAGTATTTTTTGTATTCCTTGTCTTCGACTGCCTCCAAGAATGGATATTTTTCATACAACGGCAGTATGCACACTGAAGATTTTGTATTTTTTCCGCTACAGCACTTTTTGGATTTCCTTAGCACGTAAGTTATTCTTACATGTGCGTGGCAGAGGTTGTCCGACTATGGGTATTTCCCCTACCAGAATGTACTGTAAAAAGCCTTGTGTAATTCATCTACAATTGTATTTTAAACATTTTTTTGGGTACTTTCAGTTCTGTAAAGTTGTTCTATTTTTTTCCATTGAAATAATTGGCCTGGAAGAGAAGTTTGTACAGTG

Fln Alignment:

Contig803___MTPSRMSGDLDVITGSTYASSEPSDYVRGIDAKTKRLSSGRNNLVPEPEEVVHPSLPGXXXXXXXXXXXXXXXDKGWSGLSTTNDCSRGSWATHVVVDREDISSTMSDPGPIWDSEPRWDEGPKWDAEPKWDAENNFGMKGPVDEMLTKSNQNGLKVEEEKWVVRKGPFLGILICNHPCKTVQSLKSQVLAPRAEHDDNSLDIMXXXXXXXXXXXXXXXXMQFGRHLSLPFVEYTKVKSVKLKPGKNGHKGCGIDGELLHVNGPVSTSLLPEQCKLIGRPVRHS
D5AE66_____________MTPSRMSGDLDVMTGSTYASSEPSDYVRGIDAKTKRLSSGRNNLVPEAEEVVHPSLPGSATPSRPRTRVKSRTDKGWTAVSTTNDCSRASWGNHVMVDREDISSTMSDPGPIWDSEPRWDEGPKWDAEPKWDAENNFEMKGSVDEIFTKSNQNGLKIEEEKWVVRQGPFLGILICNHPCKTVQNLSSQVLAPRAEHDDNTLDLLLVRGVGRLQLLRFFVLMQFGRHLSLPFVEYTKVKSVKLKPGKNDHQGCGIDGELKHLNGPISTSLFPEQCKLIGRPVRHS

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
878		66	33		0.997452
879		66		33	0.997452
1022	75			25	0.996473
1025		75		25	0.996473
1027	75		25		0.996473
1625			83	16	0.994512
1977		10		90	0.90298
2625	90	10			0.90298
2626		10	90		0.90298
2627	90		10		0.90298
2632		10	90		0.90298
2686		88		11	0.923564
2753	11		88		0.923564
2754		11		88	0.923564
2828	14		85		0.999981
3004	14			85	0.999981
3006	14		85		0.999981
3007			85	14	0.999981
3142		50		50	1.0
3278	23	76			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain