SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene789

Length: 3029 nt

UniGene Fasta

>sp_v3.0_unigene789
ATCCGAGCCTCAGACGGCAGTACCGCCCTGAGATCTGTCTTTTTTAGATTGCAGACCGCCTTTTCATAACAAAATTTGCATTGGAATCTCTGCAGATTTTGTTTTCTATAGGTGGAAGCGATCATTTCAGGGAGAGGTATCACTAATGCCCTTTTGAACGAGGGGGAATCGATCGTGTTTGACTGTACTGTATGTGCGTCTCTCATCATTCAATCGATCAGACATTCATTCATTCATGTGCCGTATCGATCGATTGGTTTGTTTTCACAGCCTCTGAGAAACTGGGCACTGGGCAGTTTTCAATATATACATTGCCAGTTTAGGTTTGCTCGAATCCTTCCGAGCCCAGGTCTGAGAAATTTGTACGAGGGCCTGAATTTGAATCCGAATAGGCAGGAGGGTTTTTTCTTCCTCTTTTTTACCTTAAGCATCCGAACTCCATTTGGTGATGGAAATTCCTTTGGGATTCTTAAGGTGAGCCCAATGCACTGAGAATAGAGCCGGGGCTTGCTGTGGTAAAACTACTGCGGAGTTACGCAGCACTGGGTTGATCTGATCAGGATTGCCATGACCAGAGTAGGATCAACCCAGTTAAAGACCCTGCCTGATGGAAAGATCGACAAGGTTTGATAAGGATATTATTGGGTTGATCAGGATCCTATTCACTATTTGATTTAAATCAAATACAGTTTATGTGGCTGTGTCAGTACGATATTGCAGCTCAATCAACAGGGGAGTTGATCAATATTAGGTGTATCCAATCCAGATTGGTTTGACCAGAGCAGGAGCAATCCAGTTAAAATTGTGCAACATAAAAAAATGTGGAGGATATTATTTTCAGTGCCTCATAAGTTGACCTAAATCAAACACATTCTATGTGGTTGTGCTAGGAGGATATTGTCGGATAAGCTTTCAAGGGCATCAGAGAATCTGCAATGTGTTTTAGGCCTGTCTGTGCATTTGGGTCTACAGTCAGTCATCCAGTTAATATATCTCTCTCTTTGTTTATATGGTCCATTCAACCCTCTGATATATTGGAGTGAAGAACCTTCAGCCACTGCTGAAGGTTTCAGTCGGCAGAAGTCGTTGGACCGAGTGGCTTCCAGTCAATTAGTGCTTGAATTGTATCTTCTCAAGCCCTATATCAGTAATGGTGTACGCTGCCATATGTAGAATAGTGCATTTTATAGAATAAATCCAAGGTTCGACTAGGTCGGTTCGTTGAAACTACAGTTTTCTCAGATCCCAGTTGCTCCATTTTTAATATTTTTTTAAATCAGGAACGCTGGTTCTTTCCACAATTTCAGGCGCCAGGATTGACCATTGAATTGGATTCAATATTAAGGGAAGTCCAGGGTTCTAATCTTCTATAAACTTCAAGCCTTCAGTAGACATGTCGGATGCAATTCCTTCTTGTTTTTCTGGCGACAGAGGCCTCCAAGGCAAATCGACCCAGAGTCTGGTTACCTGCACATATCAGACCAAACTGGCAGGGCATTGTCGACTTCTGACCGTGACCTGGTGCAAGAATCTCATGGGCCAGGGCCTGAGTATATCAGTAGACGAGGACGAGGACCTTAGTGCTCAATCAATGTGCAAAGTCGAGCTTAAGCCATGGTACTTCTGGAGAAAACAGGGCTCTAAGAGCTTTGAGGTCGATGGACTAAAGGTCGAAGTTTTCTGGGATCTTGGCTCTGCTAAATTCCTCTGCGGGCATGAACCCCAGGAAGGATTCTATGTTGCAGTTGTCTGTGACGAAGAGGTCGTTCTGCTGTTGGGAGACATGAAGAAGGAGGCTTTGAAAAAGACTAAGGCCAGGCCTTCAGTTATCGAAGCCACCTTGATCTCCAAAAAAGAGCATGTCTTTGGCAAGAAGTACTTCAACACGAGGACTAAGTTGGATGAGGCTGGTAATAAACCTCATGACATCTCTATTGAATACCATACAACTGGACCCAGAGATCCTGAAATGAGCATCAAGGTGGATGGGCAGGTAATTTTACAGGTGAAGCAGTTGCTCTGGAAGTTCAGAGGCAATCAGACGGTAAGTGCCAATGGTGTTATTCTGCAAGTTTTCTGGGATATTCATGATTGGTTATTCAATCCTGGTTTGGGCCATGCGTTGTTTGTCTTCAAGCCCATATCCTCTTCTGCTCCTCGAAAGTCGATTGTGCAGAATTCGAACAGATCGCCAATGAAGTTTGATGGTTGTGCAGAATCAGAGGAGAAGAGCACTGGTGTCCTTGCAGACTATTGTTTATTGCTTTATGCTGGAAATTGAATTGACCACAGCGTTTGTGGTGTTAGCAATTTGTTCAATTCAGTGACATTCCATTTTAGTTTAAGGAGATGGACCTCCAATGTTGGAGTGTGTTTCGACTTGTGTATTCACACCACTTTGCAGGCTATTGTTGATTCTAGGATTGGTTTTGTTATAACGTGGTTGACTTTGGGCCTGTCCCTCACTACTGGTGCTGTCGCCGCTGGGGATTTTGTTTGTTTTGCTCCTGAGAAGGTCATGGAGGCACAGTGGTGATTGGTATTTGAATTCCCATAGAGATTTTACAAAGTCCAATTCAGACTAGGGGATGCCACCAATTGGGCTTGCCTGGCTGTTTATTTTCTCGATCCAGACAGTGATCTAAGCTCAGTTTATTTGCAATATGCAAGAGGTCATCTTGCATTCTGTAATGTAAAATGTGATCCTTTATGTTAGGTGCAGGTATTCATTTTCTATTGTTGCAGTAATGATTCATCTGAAGCTCTTTATTATTGAGCTTCCTGTAGAAAATAACCAGTGCCTCCTTATTGACCCATTCATCGATTTTCATGGAATCGTGCTGGGAGGCATATGAGTGTTTGGACCTATTTAAAAATCAGCATGCCTTAACCTGGTTCTGCAAAATGGTTGCTATATGCTGCTTTTATAAGAAAGCAAGTTGAAGTTTATATCTTGTGGTTTATGCTTTTGTAACTTGACATTATTCTTCTCTTATATAATGAGAACATGAAAGTGGATTGAATGAGGA

Ace file of the UniGene sp_v3.0_unigene789

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein phosphatase 2c, putative (EC:3.1.3.16)	-	-	0.0	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%

Source	Gene names
Sma3	AT4g12690; At2g04220; At3g04860; At4g12690; At5g28150; At5g48270; GSVIVT00015969001; GSVIVT00019979001; GSVIVT00022079001; GSVIVT00023730001; GSVIVT00029057001; GSVIVT00030761001; GSVIVT00031134001; GSVIVT00033441001; LOC_Os03g59200; OJ1121_A05.24; OSJNBa

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	regulation of DNA repair	GO:0006282	Biological Process	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Ribosomal protein L24e-related	IPR000988	-	-
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Regulatory protein RecX	IPR003783	-	-
Sma3	Protein of unknown function DUF868, plant	IPR008586	-	-
Sma3	TRASH	IPR011017	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G04220.1	Plant protein of unknown function (DUF868) chr2:1445401-1446324 FORWARD LENGTH=307	54%
RefSeq	Arabidopsis thaliana	NP_178505.1	uncharacterized protein [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002322201.1	predicted protein [Populus trichocarpa]	46%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNS3

Fln msg:

Fln protein: MSDAIPSCFSGDRGLQGKSTQSLVTCTYQTKLAGHCRLLTVTWCKNLMGQGLSISVDEDEDLSAQSMCKVELKPWYFWRKQGSKSFEVDGLKVEVFWDLGSAKFLCGHEPQEGFYVAVVCDEEVVLLLGDMKKEALKKTKARPSVIEATLISKKEHVFGKKYFNTRTKLDEAGNKPHDISIEYHTTGPRDPEMSIKVDGQVILQVKQLLWKFRGNQTVSANGVILQVFWDIHDWLFNPGLGHALFVFKPISSSAPRKSIVQNSNRSPMKFDGCAESEEKSTGVLADYCLLLYAGN*

Protein Length: 297

Fln nts: ATCCGAGCCTCAGACGGCAGTACCGCCCTGAGATCTGTCTTTTTTAGATTGCAGACCGCCTTTTCATAACAAAATTTGCATTGGAATCTCTGCAGATTTTGTTTTCTATAGGTGGAAGCGATCATTTCAGGGAGAGGTATCACTAATGCCCTTTTGAACGAGGGGGAATCGATCGTGTTTGACTGTACTGTATGTGCGTCTCTCATCATTCAATCGATCAGACATTCATTCATTCATGTGCCGTATCGATCGATTGGTTTGTTTTCACAGCCTCTGAGAAACTGGGCACTGGGCAGTTTTCAATATATACATTGCCAGTTTAGGTTTGCTCGAATCCTTCCGAGCCCAGGTCTGAGAAATTTGTACGAGGGCCTGAATTTGAATCCGAATAGGCAGGAGGGTTTTTTCTTCCTCTTTTTTACCTTAAGCATCCGAACTCCATTTGGTGATGGAAATTCCTTTGGGATTCTTAAGGTGAGCCCAATGCACTGAGAATAGAGCCGGGGCTTGCTGTGGTAAAACTACTGCGGAGTTACGCAGCACTGGGTTGATCTGATCAGGATTGCCATGACCAGAGTAGGATCAACCCAGTTAAAGACCCTGCCTGATGGAAAGATCGACAAGGTTTGATAAGGATATTATTGGGTTGATCAGGATCCTATTCACTATTTGATTTAAATCAAATACAGTTTATGTGGCTGTGTCAGTACGATATTGCAGCTCAATCAACAGGGGAGTTGATCAATATTAGGTGTATCCAATCCAGATTGGTTTGACCAGAGCAGGAGCAATCCAGTTAAAATTGTGCAACATAAAAAAATGTGGAGGATATTATTTTCAGTGCCTCATAAGTTGACCTAAATCAAACACATTCTATGTGGTTGTGCTAGGAGGATATTGTCGGATAAGCTTTCAAGGGCATCAGAGAATCTGCAATGTGTTTTAGGCCTGTCTGTGCATTTGGGTCTACAGTCAGTCATCCAGTTAATATATCTCTCTCTTTGTTTATATGGTCCATTCAACCCTCTGATATATTGGAGTGAAGAACCTTCAGCCACTGCTGAAGGTTTCAGTCGGCAGAAGTCGTTGGACCGAGTGGCTTCCAGTCAATTAGTGCTTGAATTGTATCTTCTCAAGCCCTATATCAGTAATGGTGTACGCTGCCATATGTAGAATAGTGCATTTTATAGAATAAATCCAAGGTTCGACTAGGTCGGTTCGTTGAAACTACAGTTTTCTCAGATCCCAGTTGCTCCATTTTTAATATTTTTTTAAATCAGGAACGCTGGTTCTTTCCACAATTTCAGGCGCCAGGATTGACCATTGAATTGGATTCAATATTAAGGGAAGTCCAGGGTTCTAATCTTCTATAAACTTCAAGCCTTCAGTAGAC_-_ATGTCGGATGCAATTCCTTCTTGTTTTTCTGGCGACAGAGGCCTCCAAGGCAAATCGACCCAGAGTCTGGTTACCTGCACATATCAGACCAAACTGGCAGGGCATTGTCGACTTCTGACCGTGACCTGGTGCAAGAATCTCATGGGCCAGGGCCTGAGTATATCAGTAGACGAGGACGAGGACCTTAGTGCTCAATCAATGTGCAAAGTCGAGCTTAAGCCATGGTACTTCTGGAGAAAACAGGGCTCTAAGAGCTTTGAGGTCGATGGACTAAAGGTCGAAGTTTTCTGGGATCTTGGCTCTGCTAAATTCCTCTGCGGGCATGAACCCCAGGAAGGATTCTATGTTGCAGTTGTCTGTGACGAAGAGGTCGTTCTGCTGTTGGGAGACATGAAGAAGGAGGCTTTGAAAAAGACTAAGGCCAGGCCTTCAGTTATCGAAGCCACCTTGATCTCCAAAAAAGAGCATGTCTTTGGCAAGAAGTACTTCAACACGAGGACTAAGTTGGATGAGGCTGGTAATAAACCTCATGACATCTCTATTGAATACCATACAACTGGACCCAGAGATCCTGAAATGAGCATCAAGGTGGATGGGCAGGTAATTTTACAGGTGAAGCAGTTGCTCTGGAAGTTCAGAGGCAATCAGACGGTAAGTGCCAATGGTGTTATTCTGCAAGTTTTCTGGGATATTCATGATTGGTTATTCAATCCTGGTTTGGGCCATGCGTTGTTTGTCTTCAAGCCCATATCCTCTTCTGCTCCTCGAAAGTCGATTGTGCAGAATTCGAACAGATCGCCAATGAAGTTTGATGGTTGTGCAGAATCAGAGGAGAAGAGCACTGGTGTCCTTGCAGACTATTGTTTATTGCTTTATGCTGGAAATTGA___ATTGACCACAGCGTTTGTGGTGTTAGCAATTTGTTCAATTCAGTGACATTCCATTTTAGTTTAAGGAGATGGACCTCCAATGTTGGAGTGTGTTTCGACTTGTGTATTCACACCACTTTGCAGGCTATTGTTGATTCTAGGATTGGTTTTGTTATAACGTGGTTGACTTTGGGCCTGTCCCTCACTACTGGTGCTGTCGCCGCTGGGGATTTTGTTTGTTTTGCTCCTGAGAAGGTCATGGAGGCACAGTGGTGATTGGTATTTGAATTCCCATAGAGATTTTACAAAGTCCAATTCAGACTAGGGGATGCCACCAATTGGGCTTGCCTGGCTGTTTATTTTCTCGATCCAGACAGTGATCTAAGCTCAGTTTATTTGCAATATGCAAGAGGTCATCTTGCATTCTGTAATGTAAAATGTGATCCTTTATGTTAGGTGCAGGTATTCATTTTCTATTGTTGCAGTAATGATTCATCTGAAGCTCTTTATTATTGAGCTTCCTGTAGAAAATAACCAGTGCCTCCTTATTGACCCATTCATCGATTTTCATGGAATCGTGCTGGGAGGCATATGAGTGTTTGGACCTATTTAAAAATCAGCATGCCTTAACCTGGTTCTGCAAAATGGTTGCTATATGCTGCTTTTATAAGAAAGCAAGTTGAAGTTTATATCTTGTGGTTTATGCTTTTGTAACTTGACATTATTCTTCTCTTATATAATGAGAACATGAAAGTGGATTGAATGAGGA

Fln Alignment:

Contig789___QSLVTCTYQTKLAGHCRLLTVTWCKNLMGQGLSISVDEDEDLSAQSMCKVELKPWYFWRKQGSKSFEVDGLKVEVFWDLGSAKFLCGHEPQEGFYVAVVCDEEVVLLLGDMKKEALKKTKARPSVIEATLISKKEHVFGKKYFNTRTKLDEAGNKPHDISIEYHTTGPRDPEMSIKVDGQVILQVKQLLWKFRGNQTVSANGVILQVFWDIHDWLFNPGLGHALFVFKPISSSAPRKSIVQNSNRSPMKFDGCAESEEKSTGVLADYCLLLYA
B8LNS3_____________QNMVTCLYLTTLSGQTRLITVTWCKNLMGQGLSVNVD---DPSYQCLCRVDMKSWLFWKKKGSKRFELGTTKVDVFWDLSSARYGSAPEPLEGYFVAVVSNEEVALLLGDMCKEAFKKTHAKPPA-ETVLISRKEHVFGKNCYTTKAQFCNSG-RIHDIVIECQTGGPREPKLCVRIDKQLVVQVKHLIWKFRGNQTISVDGLPIEMFWDVHDWLFNPSLGHAVFMFKTITSGEVQEPSLSKPVSHSFKHKELAQSQGNGYG----FSLLMYA

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
955	12			87	0.992554
956	12		87		0.992554
959		87		12	0.992554
1068	33		66		1.0
1106	66		33		1.0
1112	33			66	1.0
1122	66		33		1.0
1139		88		11	0.923564
1245		16		83	0.994512
2012	88		11		0.923564
2046			77	22	0.999999
2089	22	77			0.999999
2096		14	85		0.993533
2097	14		85		0.993533
2193	87			12	0.992554
2316	16		83		0.994512
2336		16		83	0.994512
2343		16		83	0.994512
2363		11		88	0.923564
2420		10	90		0.90298
2476		11		88	0.923564
2571	87		12		0.992554
2573	87		12		0.992554
2601		83	16		0.994512
2763		40	60		1.0
2911	66		33		1.0
2921	16			83	0.994512
2924			83	16	0.994512
3032	33		66		1.0
3033	50		50		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
223	237	CATT CATT CATT CAT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain