SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene787

Length: 1016 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene787 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%

Source	Gene names
Sma3	POPTRDRAFT_552908; POPTRDRAFT_552911; POPTRDRAFT_756022; POPTRDRAFT_908562;

Source	InterPros	Term	Type	e value	Identity
Sma3	Patatin/Phospholipase A2-related	IPR002641	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002327121.1	predicted protein [Populus trichocarpa]	2.0e-14	49%

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
583			75	25	0.996473
610		20	80		0.995493
613	80	20			0.995493
614			20	80	0.995493
615		80		20	0.995493
616	80		20		0.995493
618	80	20			0.995493
619	80	20			0.995493
627		80		20	0.995493
633	20		80		0.995493
737			20	80	0.995493
799			10	90	0.90298
804	10		90		0.90298
805		10		90	0.90298
806	90	10			0.90298
807	90			10	0.90298
808			90	10	0.90298
810		90	10		0.90298
812		90		10	0.90298
816		11	88		0.923564
818	88	11			0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain