SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene786

Length: 1739 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene786

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] ref\|NP_849790.1\| RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] ref\|NP_001117462.1\| RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] gb\|AAF87887.1\|	-	-	0.0	66%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	61%

Source	Gene names
Sma3	AT1G50440; At1g50440; At1g50440/F11F12_21; At2g22120; F11F12.20; GSVIVT00019427001; GSVIVT00029631001; LOC_Os11g39130; OJ1007_D04.30; Os02g0132300; Os11g0604600; OsI_05734; OsJ_05261; OsJ_34410; PHYPADRAFT_108271; POPTRDRAFT_655648; POPTRDRAFT_725249; POP

Source	GOs	Term	Type	e value	Identity
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-CH-type	IPR011016	-	0.0	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G50440.1	RING/FYVE/PHD zinc finger superfamily protein chr1:18686099-18687646 FORWARD LENGTH=250	66%
RefSeq	Arabidopsis thaliana	NP_849790.1	RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002315373.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7SRZ9

Fln msg: Separated hits, possible frame ERROR between 1034 and 1093,

Fln protein: MMTRGNENENEDVRDTEPILSRETVAYSDNGDNSTSEEELLLGDIALVHTGLKITGSSDEDNESINVDQPQCRICLDTGGEDLIAPCRCRGTQKFVHRSCLDYWRAAKEGFAFAHCTECRAMFYLRANVPPDRWWSRLKFQLLVIRDHTAIFIVVQVVVALLGMLVYKFYGEELREMFGYEQHPxxxxxxxxxxxxxxxxxxxxxFLQYICGQKISDRHYHVLAKQELTKEYVVESRNDNENEEPPELDPGHVTELKMLGLY*

Protein Length: 264

Fln nts: CATTTAATTTGAAGTGACATTTTGAGGTTGAGTCGTCTTGCGTTTGTCTTTCTATCTTGTGGAACACTTGGGAATTAAGTTTGCACATCAACCATCAAAATATATGATGGAAGATTGAATTACTACTCTGGTTGTGGTTGTCCGAGCCGGTTTAGACACCAGTTTTGTCCATTCCTTTCCCTTTATCATTTTAATTCTATCAAACCAGAACTGCATTTGCACATAAAAGGTCAACGCCTACGAGATTCAGAGGGGAAACCGACATTTTTGGCTTGAAATCCATCTGGATTCATTTAGGATGGGTGGAATCGTAGATATCAGATGTTAATATTGGACAATCCAGTTGCAGTAGAGGTCCTTTATTTCCTGAACTATTTACCGTGTGCTTCATGTATTTGATCTTTGATGGATTCTAAAAGATCACCATTCCAAAGTTAAGCATATCTTCAGATAATCATACCCCTCTGGGATGTCCTCTT_-_ATGATGACTAGAGGAAATGAAAATGAAAATGAAGATGTGAGGGATACTGAGCCCATTTTATCTCGGGAAACTGTTGCTTATAGTGATAATGGGGACAACTCAACAAGTGAGGAAGAATTATTATTGGGTGATATAGCCCTTGTACATACGGGTCTTAAAATTACTGGAAGTAGTGACGAAGACAATGAATCAATAAATGTAGACCAACCACAATGCCGGATTTGCCTTGATACTGGAGGTGAAGATTTGATTGCACCATGCCGTTGCAGAGGCACCCAGAAGTTTGTGCACAGATCATGTCTTGACTACTGGAGGGCAGCCAAGGAGGGCTTTGCTTTTGCCCACTGTACTGAATGCAGGGCAATGTTCTATTTGCGTGCAAATGTACCACCTGATCGATGGTGGTCAAGGTTGAAGTTTCAGCTTCTTGTTATAAGAGATCACACAGCCATTTTCATTGTCGTTCAAGTGGTTGTTGCACTCCTGGGCATGCTTGTCTACAAATTTTATGGTGAGGAACTTAGAGAAATGTTTGGCTATGAACAACATCCTTAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTTCTTGCAATATATATGCGGTCAGAAGATCAGTGATCGCCATTATCATGTTCTTGCCAAGCAAGAGTTAACGAAGGAGTATGTCGTAGAAAGTCGGAACGATAATGAGAATGAAGAGCCACCTGAGCTTGACCCTGGGCATGTCACTGAGCTGAAAATGCTTGGGCTGTATTGA___ACAAAAGCTAAAATGCCTTAGCCCAATGCCTTTCTTTACATGTTCATTGCTAAGTGATGTGCTATGCACTGAACAAGTTACACAAGTTGTAAATTTATTGTTACGACTGTAATATAATCAGAATCAGAATCAGAATGGGAGCTTCTATGCACAGTGAAGGACTCGACAAGAAGCTTACATCGAAGAGGAGGCAGCTCCAACATTGTCACAGGCATTTAATTCCTGTGTTGTTTTCATAGTATTTGGTTTATTCAAATCATGTTCCCGTGGGTGAGAGTTTATTTATTTATCTGTACAGCAAAGCATATAAGTCCTTGTCAGGTTGACAGAAGGTGATGGAAGCCAATATGACAGTAGCTGAAGGCTAAAACATGAACCAAAGGATGTATTACTTTGAATTATTGTAAGAGCTCTCAAATTCTTATATCTACCATTACGAGGTTCCGTGCCTTTCTTAATATATAATGATCTTG

Fln Alignment:

Contig786___MMTRGNENENEDVRDTEPILSRETVAYSDNGDNSTSEEELLLGDIALVHTGLKITGSSDEDNESINVDQPQCRICLDTGGEDLIAPCRCRGTQKFVHRSCLDYWRAAKEGFAFAHCTECRAMFYLRANVPPDRWWSRLKFQLLVIRDHTAIFIVVQVVVALLGMLVYKFYGEELREMFGYEQHPYxxxxxxxxxxxxxxxxxxxxFLQYICGQKISDRHYHVLAKQELTKEYVVESRXXXXXXXXXXXXXGHVTELKMLGLY
D7SRZ9_____________MQLVSNDRQTEDGSETEPILCQSNIEQRLEESSTSCEIRTVEVDCSIVDGDLENL-DTDENCALVNADQPQCRICLDIGGEDLIAPCHCRGTQKYVHRSCLDNWRSTKEGFAFAHCTECRAVFILRANVPPDRWWLRLKFQLLVARDHAFIFVIVQLIVAFLGVLVYKFYGEELREMFGYDEHPYxxxxxxxxxxxxxxxxxxxxFIAIICGQRINERHYHVLAKQELTKEYVVEDR--EVNKDVPELDPSHVTELRMLGLY

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1218	75	25			1.0
1222			25	75	1.0
1230			75	25	1.0
1465		85		14	0.993533
1466		85		14	0.993533
1530		25		75	0.996473

SSRs (tot: 3)

Start position	End position	Sequence	Length
494	512	AAATGA AAATGA AAATGA A	19
1382	1402	AATCAG AATCAG AATCAG AAT	21
1544	1556	TTTA TTTA TTTA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain