SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene777

Length: 1630 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene777

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	P4H isoform 1 [Arabidopsis thaliana] gb\|AAC64297.1\| hypothetical protein [Arabidopsis thaliana] gb\|AAM15158.1\| hypothetical protein [Arabidopsis thaliana] dbj\|BAC42340.1\| unknown protein [Arabidopsis thaliana] gb\|AAP04083.1\| unknown protein [Arabidopsis t	-	-	0.0	72%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	72%
Sma3	Prolyl 4-hydroxylase alpha subunit, putative	-	-	6.543e-20	-

Source	ECs	Term	Type	e value	Identity
Sma3	Procollagen-proline dioxygenase.	EC:1.14.11.2	-	6.543e-20	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Arginine and proline metabolism	00330		6.543e-20	%
Sma3	Metabolic pathways	01100		6.543e-20	%

Source	Gene names
Sma3	AT4g35810; AT4g35820; At1g20270; At2g17720; At2g43080; At3g06300; At3g28490; At4g35810; At4g35820; At5g18900; At5g66060; CHLREDRAFT_138462; CHLREDRAFT_138508; CHLREDRAFT_166317; CHLREDRAFT_96954; F14O10.12; F24P17.24; GSVIVT00013719001; GSVIVT00015502001;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	procollagen-proline 4-dioxygenase activity	GO:0004656	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	GO:0016706	Molecular Function	-
Sma3	peptidyl-proline hydroxylation to 4-hydroxy-L-proline	GO:0018401	Biological Process	-
Sma3	protein metabolic process	GO:0019538	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Metridin-like ShK toxin	IPR003582	-	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	-
Sma3	Prolyl 4-hydroxylase, alpha subunit	IPR006620	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G43080.1	AT-P4H-1 P4H isoform 1 chr2:17915755-17918599 FORWARD LENGTH=283	72%
RefSeq	Arabidopsis thaliana	NP_181836.1	P4H isoform 1 [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002302889.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: I1LFK7

Fln msg:

Fln protein: MVRTRIVFGLLTFVTVGMIIGALFQLAFIRRLEESAGSSFPLYRRKGRENQEGYLYLPKGFPLWEQDEDARILRIGFVKPEVVSWSPRIIVLHNFLSAEECDYLIATARPRLQVSTVVDTKTGKGVKSNVRTSSGMFLNYEEKKYPMIQAIEKRISVYSQVPVENGELMQVLRYEEGEFYKSHHDYFSDEFNLKRSQRVATMLMYLSDDVEGGETHFPFAGDADCSCGGKRVMGICVKPIKGDAVLFWSVGLDGSVDPKSRHGGCEVLGGVKWSATKWMRQKSIA*

Protein Length: 287

Fln nts: CGAGTCAAACACGTTAAAACAGGGAGACGCATTAAATGAACGTCACAAGGAAGATGGGCATTTGAATGGCGTTTGGCTATTACATCGTGCTGTGTATCCGTCTTCTCCTGCAGGTAGGAAATAGGAATACTCAAATTTAAACTGGTGACCCACATCTGGGGTCACTAATTGCTCTGCTCTCATATTAAGCGATCAGT_-_ATGGTTCGCACCAGGATTGTTTTCGGTCTCCTCACCTTCGTCACTGTTGGCATGATAATAGGTGCATTGTTTCAGTTGGCATTTATTCGGCGCTTGGAAGAGTCAGCTGGATCGAGCTTCCCTCTATATAGAAGAAAAGGACGTGAAAATCAAGAAGGATACCTTTACCTACCTAAAGGATTTCCGCTGTGGGAGCAGGATGAAGATGCAAGGATTCTTCGCATTGGATTTGTCAAACCTGAAGTAGTTTCTTGGTCCCCAAGAATTATTGTACTCCACAATTTTTTGAGTGCTGAGGAGTGTGATTACCTGATTGCAACTGCTCGTCCCAGACTCCAAGTTTCTACTGTGGTGGACACTAAAACAGGCAAGGGTGTTAAAAGTAATGTTCGAACAAGTTCTGGGATGTTCTTAAATTACGAGGAGAAAAAGTATCCAATGATTCAGGCAATTGAGAAGCGCATTTCAGTTTATTCTCAAGTACCAGTAGAAAATGGAGAACTTATGCAGGTTCTACGGTATGAGGAAGGTGAATTTTATAAATCTCATCATGATTATTTCTCGGATGAGTTCAACTTGAAACGAAGCCAAAGAGTTGCAACAATGCTGATGTATCTCAGTGATGATGTAGAAGGGGGAGAAACACATTTTCCCTTTGCTGGAGATGCAGACTGTAGTTGTGGAGGCAAGAGGGTGATGGGAATTTGTGTGAAACCAATAAAAGGAGATGCGGTTCTTTTCTGGAGTGTGGGTCTAGATGGTTCAGTGGATCCGAAAAGTCGTCATGGAGGTTGTGAGGTGCTAGGGGGTGTTAAATGGTCGGCTACAAAATGGATGAGACAGAAAAGCATTGCCTGA___TGGTCCATGTATTATAGTCTATGTTAAATTAATTTATTGAAGTAGCACATCTATGGAGAGGTGTCGATGCTTAGCACATCACAAAGATGAATGATGCAAATCCTTTTAGATATTGATACAAAAGGCTGTGCAAATGCAATGCAATATATAGGAACGATGTTTTTCTGTGCAAAGTTCATTTTTGGATGAGATCAAAGTTTCAAGAGCTTAGTTGTGAAAGTTTGCCTCTTAAGATGTAATGGTCACGGGACAATGATTACGTCATTAACCCAATAGATGGTTGTAATGGTATATGGCACGAAGAATGAAGGGAGTAGTTATTGCAAGCATGGAAATTTAAGCTATTTTTCAATTGCTAGCCATGACATTGATGGCCGGTGGTGGCATGTCCTTGAGGTTAGCTGGTTGATTTCTAGAATGTCTTCCTCAGTGGCATGAAATTATATCAAAGGCTAAATTCAAAAGTCTTCCTTGTGTAAAGATGCATTATTTTTAACATGTACTACTTTCTACCTAACTAAAACAGGTTGTTCAACATTTTATCTTTTGATTTTAAAAAGATTTGCCAATTTGGG

Fln Alignment:

Contig777___RIVFGLLTFVTVGMIIGALFQLAFIRRLEESAGSSFPLYRRKGRENQEGYLYLPKGFPLWEQDEDARILRIGFVKPEVVSWSPRIIVLHNFLSAEECDYLIATARPRLQVSTVVDTKTGKGVKSNVRTSSGMFLNYEEKKYPMIQAIEKRISVYSQVPVENGELMQVLRYEEGEFYKSHHDYFSDEFNLKR-SQRVATMLMYLSDDVEGGETHFPFAGDADCSCGGKRVMGICVKPIKGDAVLFWSVGLDGSVDPKSRHGGCEVLGGVKWSATKWMRQ
I1LFK7_____________RIVFGLLTFVTVGMIIGALSQLAIIRRLEDSYGTDSLPFRRLRGLDTDRHLQLPRGVPFWNNDKEAEILRLGYVKPEVLNWSPRIILLHNFLSMEECDYLRALALPRLHISTVVDTKTGKGIKSDVRTSSGMFLNSKERKYPMVQAIEKRISVYSQIPIENGELMQVLRYEKNQYYKPHHDYFSDTFNLKRGGQRIATMLMYLSDNIEGGETYFPLAGSGECSCGGKLVKGLSVKPIKGNAVLFWSMGLDGQSDPNSVHGGCEVISGEKWSATKWLRQ

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
347	33		66		0.997452
360		33		66	0.997452
420		66		33	0.997452
662		80	20		0.995493
677			80	20	0.995493
714		80		20	0.995493
792	87			12	0.992554
869	50		50		1.0
878		14		85	0.993533
886	14		85		0.993533
889	85			14	0.993533
890			85	14	0.993533
893	33		66		1.0
986	87		12		0.992554
991		12	87		0.992554
992		12	87		0.992554
998	85	14			0.993533
999			85	14	0.993533
1006		16	83		0.994512
1007			83	16	0.994512
1008		14	85		0.993533
1009	14		85		0.993533
1023	71		28		1.0
1086	85	14			0.993533
1123		66		33	1.0
1137	85		14		0.993533
1140	85		14		0.993533
1141		85		14	0.993533
1142	85		14		0.993533
1144	85	14			0.993533
1145		14	85		0.993533
1146	85			14	0.993533
1149	85		14		0.993533
1150	85	14			0.993533
1158	85	14			0.993533
1162	14	85			0.993533
1215	40		60		1.0
1299		33		66	0.997452
1338	33		66		0.997452
1526		25		75	0.996473
1559	33	66			0.997452
1596	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain