SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene767

Length: 2454 nt

UniGene Fasta

>sp_v3.0_unigene767
TCATCACGCGAACTACTTTATTTTTGGTTTTCAACAAACCAACAAACAACAAAGACAGGAGCCAGCTGCATAAACGCACAGAGAGATACGATGCAAATGCAGAGAGATACGACGCAAATGCAGCTCATATGTGGATAATAAAGCGCTAGAGATTTTTAATTGAGCTCAACAACAGGCGGCTCCAAGGAGGTCGCGTGTTCGACAATTTCCTTTGCCTGAGGTCGTGTGTTCGACTCTCCGGAACGGCGAAACCTGTTAATTCCGTGTCTTATGCGTTTGCCAGATGATGGATCCTCGTTTACTATTTCCTGGCGTTGCTGTAGTGTTCCTGCTTTTACTCTTCTCGCAGGGTGGACTGTGCGGCGACATTGTTCATGATGACAAATCGCCTAAGCAGCCTGGCTGTGAAAACAAATTCGTACTGGTGAAAATTCAGACATGGATAAATGGCAGGGAGGGGGAAGAATATGTTGGAGTTGGTGCTCGGTTTGGTACGCCTGTGGTATCAAAGGAGAAAGCTGCGAACAAGTCTCGTCTTGTCCTAGCTGACCCCTATGATAGCTGCACCACCCTAAGAGAAAAGCTTACCGGAGAGGCTGTTTTGGTGCATCGAGGCAATTGCACTTTCACAACAAAGGCCAAGTTTGTACAGGCAGCTGGTGCTGTAGCTATTCTTGTTATAAATGACAGAGAAGAGCTTTATAAGATGGTGTGTACACCAAATGATACTGCATCGGAGATAAAAATTCCTGCTGTTATGTTGCCAAAGACTGCAGGTGCAAGTTTCCAAAGAAGATTGAAGGAAGGTGGATCAGTTGGAGTAGTCATCTACTCACCTGACCGCCCCTTGGTGGATATTGCGGAAGTTTTTCTATGGCTTATGGCTGTGGGAACTATTCTGTGTGCTTCCTTTTGGTCAGCATGGAGTGCTAGAGAGGCATGCAATGAACACTGCAAGTCATTAAAGGATGATCCAGATGCTTTTGTCATTGAAGAAGATAGTGGGGATAAGGGTGTGGTTGATATCAGCACAACATCTGCAATTATTTTTGTAGTGATTGCATCATGCTTTCTAATTCTCATCTATAAATTCATGTCATTGTGGTTTCTGGAGCTTTTGGTCGTTATCTTCTGTATTGGTGGAGTTGAGGGTATGCAAACTTGTTTGGTTGCCTTGCTCTCCAGGTGGCTCACTCGTGCGAGAAGACTATATGTACACATACCTTTCTGTGGAGCTGTTTCAGCATTAACTTTGGCTGTGCTGCCATTTTGTATAACATTTGCTGTTGTATGGGCTGTTTATCGACGTAACTCATTTGCTTGGATTGGTCAAGATATACTCGGCATCACTTTGATCATAACTGTTCTTCAAATTGTACGGCTTCCTAATGTGAAGGTATCTACAGTTCTTCTAGGTTGTGCCTTTCTGTATGACATCTTTTGGGTGTTTGTTTCACATAAACTATTCCACGAAAGTGTGATGATTGTGGTTGCTCGTGGTGATAGAAGTGGAGAGGACGGCATACCCATGCTACTGAAAATTCCACGTTTGTATGATCCATGGGGTGGTTACAGCATCATTGGCTTTGGAGACATACTTTTACCAGGACTGCTGATAGCCTTTGCTTTAAGATATGATTGGGCAGCTAAGAAGACTTTGCAAGGAGGCTATTTTCTGTGGTCCATGATTGGCTATGGCTTTGGGCTGTTCATTACATATGTTGCTCTGAATCTGATGGATGGAAATGGACAACCTGCTCTTCTGTATATTGTTCCTTGTACCCTTGGCACTGTTATAACCTTGGGATGGTTGCGTGGTGAACTAAGTAATTTATGGTCAGAGGGAGAGCCTCGAATGCCTTGCCCACATATTGGACTCAAGGTTGGCACATGAGTTCAGGGATGATGTTCTTTGCAGAGATTTATGGTCAAAGGCAGAGCCTCAAATGCCTTGCTCACATATTGGACCTAAGGTTGGCTCATGAGTTCAGGGATGGTTTTCTTTGCAGAGAATTTTCCTGCTTGAGTTGCATTCAAATCTGTACATTTTATCTTTACATTAATTTTATCAAATGCAATGCTAAGCATTAGCCAAGCTTGGATGCTCATGTCCTACTATTATCTGGTTCCTGCAGACAGTAACTTTTAGAATGTGGCATTTCCATCTAAGGAATATTAGTGCTGATTATATGCATGATAAGTTTATTTTAACCTACAAAATGCTCAAAAGCAGACTTTATCAGTCTAGTGAAAAGCATTTCTGATCTTTATTGAGAATTCTTTTTATACCTGCATGAAATTGTACAGAGAAAGGAGTCCAACAAAATAGATTTTCAATTAAAATGAAATTCTTTTCGTTGCGTCATAATGAATATTCTTAGAGATCTTGGTGCTCGAGGTTTACTGTTTCTTATTGTAAAATTGAATATTTTGAAGAGAAGAAACATTTTAATC

Ace file of the UniGene sp_v3.0_unigene767

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptidase_A22B multi-domain protein	-	-	0.0	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Sma3	Minor histocompatibility antigen H13, putative	-	-	8.518e-12	-

Source	Gene names
Sma3	At1g01650; At1g05820; At1g63690; At1g63690/F24D7.12; At2g43070; At2g43105; B1206D04.13; F24D7.12; GSVIVT00000432001; GSVIVT00026877001; GSVIVT00033565001; Gro10; Gro11; LOC_Os11g24540; MtrDRAFT_AC150440g27v2; OJ1136_C04.4; OSJNBa0069C14.36; Os01g0914700;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Peptidase A22, presenilin signal peptide	IPR006639	-	-
Sma3	Peptidase A22B, signal peptide peptidase	IPR007369	-	-
Sma3		IPR015706	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G63690.2	ATSPPL2, SPPL2 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 chr1:23618490-23622082 FORWARD LENGTH=540	69%
RefSeq	Arabidopsis thaliana	NP_564815.1	signal peptide peptidase-like 2 [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002303595.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9U6

Fln msg:

Fln protein: MMDPRLLFPGVAVVFLLLLFSQGGLCGDIVHDDKSPKQPGCENKFVLVKIQTWINGREGEEYVGVGARFGTPVVSKEKAANKSRLVLADPYDSCTTLREKLTGEAVLVHRGNCTFTTKAKFVQAAGAVAILVINDREELYKMVCTPNDTASEIKIPAVMLPKTAGASFQRRLKEGGSVGVVIYSPDRPLVDIAEVFLWLMAVGTILCASFWSAWSAREACNEHCKSLKDDPDAFVIEEDSGDKGVVDISTTSAIIFVVIASCFLILIYKFMSLWFLELLVVIFCIGGVEGMQTCLVALLSRWLTRARRLYVHIPFCGAVSALTLAVLPFCITFAVVWAVYRRNSFAWIGQDILGITLIITVLQIVRLPNVKVSTVLLGCAFLYDIFWVFVSHKLFHESVMIVVARGDRSGEDGIPMLLKIPRLYDPWGGYSIIGFGDILLPGLLIAFALRYDWAAKKTLQGGYFLWSMIGYGFGLFITYVALNLMDGNGQPALLYIVPCTLGTVITLGWLRGELSNLWSEGEPRMPCPHIGLKVGT*

Protein Length: 538

Fln nts: TCATCACGCGAACTACTTTATTTTTGGTTTTCAACAAACCAACAAACAACAAAGACAGGAGCCAGCTGCATAAACGCACAGAGAGATACGATGCAAATGCAGAGAGATACGACGCAAATGCAGCTCATATGTGGATAATAAAGCGCTAGAGATTTTTAATTGAGCTCAACAACAGGCGGCTCCAAGGAGGTCGCGTGTTCGACAATTTCCTTTGCCTGAGGTCGTGTGTTCGACTCTCCGGAACGGCGAAACCTGTTAATTCCGTGTCTTATGCGTTTGCCAG_-_ATGATGGATCCTCGTTTACTATTTCCTGGCGTTGCTGTAGTGTTCCTGCTTTTACTCTTCTCGCAGGGTGGACTGTGCGGCGACATTGTTCATGATGACAAATCGCCTAAGCAGCCTGGCTGTGAAAACAAATTCGTACTGGTGAAAATTCAGACATGGATAAATGGCAGGGAGGGGGAAGAATATGTTGGAGTTGGTGCTCGGTTTGGTACGCCTGTGGTATCAAAGGAGAAAGCTGCGAACAAGTCTCGTCTTGTCCTAGCTGACCCCTATGATAGCTGCACCACCCTAAGAGAAAAGCTTACCGGAGAGGCTGTTTTGGTGCATCGAGGCAATTGCACTTTCACAACAAAGGCCAAGTTTGTACAGGCAGCTGGTGCTGTAGCTATTCTTGTTATAAATGACAGAGAAGAGCTTTATAAGATGGTGTGTACACCAAATGATACTGCATCGGAGATAAAAATTCCTGCTGTTATGTTGCCAAAGACTGCAGGTGCAAGTTTCCAAAGAAGATTGAAGGAAGGTGGATCAGTTGGAGTAGTCATCTACTCACCTGACCGCCCCTTGGTGGATATTGCGGAAGTTTTTCTATGGCTTATGGCTGTGGGAACTATTCTGTGTGCTTCCTTTTGGTCAGCATGGAGTGCTAGAGAGGCATGCAATGAACACTGCAAGTCATTAAAGGATGATCCAGATGCTTTTGTCATTGAAGAAGATAGTGGGGATAAGGGTGTGGTTGATATCAGCACAACATCTGCAATTATTTTTGTAGTGATTGCATCATGCTTTCTAATTCTCATCTATAAATTCATGTCATTGTGGTTTCTGGAGCTTTTGGTCGTTATCTTCTGTATTGGTGGAGTTGAGGGTATGCAAACTTGTTTGGTTGCCTTGCTCTCCAGGTGGCTCACTCGTGCGAGAAGACTATATGTACACATACCTTTCTGTGGAGCTGTTTCAGCATTAACTTTGGCTGTGCTGCCATTTTGTATAACATTTGCTGTTGTATGGGCTGTTTATCGACGTAACTCATTTGCTTGGATTGGTCAAGATATACTCGGCATCACTTTGATCATAACTGTTCTTCAAATTGTACGGCTTCCTAATGTGAAGGTATCTACAGTTCTTCTAGGTTGTGCCTTTCTGTATGACATCTTTTGGGTGTTTGTTTCACATAAACTATTCCACGAAAGTGTGATGATTGTGGTTGCTCGTGGTGATAGAAGTGGAGAGGACGGCATACCCATGCTACTGAAAATTCCACGTTTGTATGATCCATGGGGTGGTTACAGCATCATTGGCTTTGGAGACATACTTTTACCAGGACTGCTGATAGCCTTTGCTTTAAGATATGATTGGGCAGCTAAGAAGACTTTGCAAGGAGGCTATTTTCTGTGGTCCATGATTGGCTATGGCTTTGGGCTGTTCATTACATATGTTGCTCTGAATCTGATGGATGGAAATGGACAACCTGCTCTTCTGTATATTGTTCCTTGTACCCTTGGCACTGTTATAACCTTGGGATGGTTGCGTGGTGAACTAAGTAATTTATGGTCAGAGGGAGAGCCTCGAATGCCTTGCCCACATATTGGACTCAAGGTTGGCACATGA___GTTCAGGGATGATGTTCTTTGCAGAGATTTATGGTCAAAGGCAGAGCCTCAAATGCCTTGCTCACATATTGGACCTAAGGTTGGCTCATGAGTTCAGGGATGGTTTTCTTTGCAGAGAATTTTCCTGCTTGAGTTGCATTCAAATCTGTACATTTTATCTTTACATTAATTTTATCAAATGCAATGCTAAGCATTAGCCAAGCTTGGATGCTCATGTCCTACTATTATCTGGTTCCTGCAGACAGTAACTTTTAGAATGTGGCATTTCCATCTAAGGAATATTAGTGCTGATTATATGCATGATAAGTTTATTTTAACCTACAAAATGCTCAAAAGCAGACTTTATCAGTCTAGTGAAAAGCATTTCTGATCTTTATTGAGAATTCTTTTTATACCTGCATGAAATTGTACAGAGAAAGGAGTCCAACAAAATAGATTTTCAATTAAAATGAAATTCTTTTCGTTGCGTCATAATGAATATTCTTAGAGATCTTGGTGCTCGAGGTTTACTGTTTCTTATTGTAAAATTGAATATTTTGAAGAGAAGAAACATTTTAATC

Fln Alignment:

Contig767___MMDPRLLFPGVAVVFLLLLFSQGGLCGDIVHDDK-SPKQPGCENKFVLVKIQTWINGREGEEYVGVGARFGTPVVSKEKAANKSRLVLADPYDSCTTLREKLTGEAVLVHRGNCTFTTKAKFVQAAGAVAILVINDREELYKMVCTPNDTASEIKIPAVMLPKTAGASFQRRLKEGGSVGVVIYSPDRPLVDIAEVFLWLMAVGTILCASFWSAWSAREACNEHCKSLKDDPDAFVIEEDSGDKGVVDISTTSAIIFVVIASCFLILIYKFMSLWFLELLVVIFCIGGVEGMQTCLVALLSRWLTRARRLYVHIPFCGAVSALTLAVLPFCITFAVVWAVYRRNSFAWIGQDILGITLIITVLQIVRLPNVKVSTVLLGCAFLYDIFWVFVSHKLFHESVMIVVARGDRSGEDGIPMLLKIPRLYDPWGGYSIIGFGDILLPGLLIAFALRYDWAAKKTLQGGYFLWSMIGYGFGLFITYVALNLMDGNGQPALLYIVPCTLGTVITLGWLRGELSNLWSEGEPRMPCPHIGLKVGT
D5A9U6_____________MMDLRLRFCGFAIACLILLFSQHGLCGDIVHDDDIAPKQPGCENKFVLVKIQTWINGRKGEEYVGVSARFGAPVVSKEKDANKSRLVLANPYDSCTNLTEKLTGDAALVHRGNCTFTTKAKVAQAAGAVAILVVNDKEELYKMVCAKEDPASDIKIPAVMLPKTAGASFKKRLKAGGSVGVVIYSPDRPLVDIAEVFLWLMAVGTILCASFWSAWSAREACNEHCKSLKDDSDAFVMEENSGDKGVVDISTTSAILFVVIASCFLVLIYKFMSEWFLILLVIIFCIGGVEGLQTCLVALLSRWFTRARRLHIHIPFFGAVSALTLAVLPFCITFAVVWAVYRRISFAWIGQDILGITLIITVLQIVRLPNVKVSAVLLSCAFLYDIFWVFVSPKLFHESVMIVVARGDKSGEDGIPMLLKIPRLYDPWGGYSIIGFGDILLPGLLIAFALRYDWAAKKSLQGGYFLWSMIGYGFGLFMTYVALNLMDGNGQPALLYIVPCTLGTVLTLGWLRGELSNLWSKGEPQMPCPHVGPKVGT

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
52	33			66	1.0
53	33		66		1.0
54			66	33	0.997452
55	33		66		0.997452
56		33	66		1.0
61	80		20		0.995493
67		83		16	0.994512
99		16		83	0.994512
157	16			83	0.994512
159	83		16		0.994512
160	83		16		0.994512
161			16	83	0.994512
162			16	83	0.994512
166		75	25		1.0
167			25	75	1.0
168		75	25		1.0
178	10	90			0.90298
179			90	10	0.90298
181		90	10		0.90298
182			10	90	0.90298
183		90	10		0.90298
218	10			90	0.90298
219	10		90		0.90298
320		10		90	0.999898
2004	1			93	0.999973
2207		4		86	0.999539
2364	14			85	0.993533
2366	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain