SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene754

Length: 1925 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene754

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Fertilization-independent endosperm (Fragment) n=2 Tax=Hieracium RepID=B1ABR5_HIEPL	-	-	0.0	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Sma3	Fertilization-independent endosperm protein	-	-	2.907e-19	-

Source	Gene names
Sma3	At3g20740; FIE; FIE1; FIE2; FIS3; GSVIVT00027417001; MICPUCDRAFT_49065; MOE17.5; OJ1613_G04.20; OJ1613_G04.22; Os08g0137100; OsI_27737; OsI_27742; OsJ_25971; OsJ_25973; PGE1501; PGE901; PHYPADRAFT_61985; POPTRDRAFT_593495; POPTRDRAFT_834623; RCOM_0182630;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	regulation of gene expression by genetic imprinting	GO:0006349	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	histone methylation	GO:0016571	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G20740.1	FIE, FIS3, FIE1 Transducin/WD40 repeat-like superfamily protein chr3:7249064-7252254 REVERSE LENGTH=369	65%
RefSeq	Arabidopsis thaliana	NP_188710.1	polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002319805.1	polycomb group protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWP5

Fln msg:

Fln protein: MARKGLGTDAAVGSLMSSKKRKEYKVTNRFQEGKRPLYAIAFNFIDARYHNIFATAGGSRVTIYQCLEGGAISVLQAYVDDDKDESFYTLSWACDVNGSPLLVAGGHNGIIRVLDVANEKVHKSFVGHGDSVNEIRTQALKPSLILSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDVYRIASCGMDNTVKIWSMKEFWSCVVKSFTWSFFCSSFRLPYVLFGFFIGVVCSYYVYCSRWLGIFFVS*SVDNEVVLWEPYSKEQSTSDGVVDILQKYPVPECDIWFIKFSCDFHFNSMAVGNREGKVYVWELQSSPPNLIARLSHAHCKHPIRQTAISHDGSTILCCCDDGSMWRWDVVQ*

Protein Length: 371

Fln nts: TATTAAAAAATAAAAATAAACCAGCGTACTCACCTCTCCCGACAAAAGTTAAAACACGTATAGTAAATGAAACGACAATCTCAGTGTCCGAGCGAAGGAGATTGCTCTAATATGAGCCAGCTCAACTCGACGCTCTAAACTAACGTCTAATTGAACGAAGTGTTTGGCGCTGGTGTCGCCTTATAAATAGTGCCGCTTGTATCAGTGCGTATTACATCAGTGTAGTGAACACTTTGAAAGGTGAGTTTGGGCTTCGACTCTCTACCCTGTGAACAAGTTCAGCTTAAACGCTGTTGCAGTAAAAGGTGTTGAAG_-_ATGGCAAGGAAGGGTTTGGGTACTGATGCGGCAGTAGGCTCATTAATGTCATCAAAGAAGAGGAAAGAGTATAAAGTCACCAATAGGTTTCAAGAGGGCAAGCGGCCTCTTTATGCCATTGCTTTCAATTTCATTGATGCTCGCTATCATAATATTTTCGCAACAGCAGGAGGAAGCCGGGTGACCATTTACCAATGCTTGGAAGGAGGTGCTATTTCTGTTTTGCAGGCATATGTTGATGATGATAAGGATGAATCATTTTACACATTAAGTTGGGCATGCGATGTGAATGGTTCACCATTATTAGTTGCTGGTGGTCACAATGGTATAATTCGAGTGCTTGATGTTGCAAATGAAAAGGTCCATAAGAGTTTCGTTGGCCATGGAGATTCTGTGAATGAAATAAGGACCCAAGCACTGAAACCTTCCCTTATTTTATCTGCTAGCAAAGATGAATCTGTACGACTCTGGAATGTTCAAACTGGAATATGCATTTTGATATTTGCTGGAGCTGGGGGACATCGCAATGAAGTTCTCAGTGTAGATTTTCATCCTTCAGATGTATATCGTATTGCAAGCTGTGGCATGGACAACACGGTCAAGATCTGGTCTATGAAAGAGTTTTGGTCCTGTGTTGTGAAGTCATTTACCTGGTCTTTTTTTTGCTCGTCTTTCCGGTTGCCTTATGTGCTATTTGGTTTTTTTATTGGTGTCGTTTGTTCCTACTATGTGTATTGCAGTCGTTGGCTTGGTATCTTCTTTGTATCATAGAGTGTGGACAATGAAGTAGTTTTGTGGGAGCCTTACAGCAAGGAGCAAAGTACCAGTGATGGAGTTGTGGACATCCTGCAGAAGTATCCAGTGCCAGAATGTGACATTTGGTTTATCAAGTTTTCATGCGATTTCCACTTTAATTCTATGGCAGTTGGCAACAGGGAAGGAAAAGTTTATGTTTGGGAATTACAGTCAAGCCCTCCTAATTTAATTGCCAGGTTATCACATGCACATTGCAAACATCCTATTAGACAGACAGCTATATCTCATGACGGAAGTACCATTCTCTGCTGCTGTGACGATGGTAGTATGTGGCGCTGGGACGTGGTTCAGTAA___AATCAGCAATTTCCTGGCTGAATGTGCATTCGTATGTTTCAGATATTTACACCTGCACACTAATGGCTTTGATTGTTATTAGCTTCTGGTTGATGTTGTGGAAAATTTTGTCTTTAGCCAAACATTTTGTTTTGCCAGAATAGTCAACAGAGTTTTCTGTTTGCTAGAATACAGCATGCCCATTTTTATAAAGCTACACTTTGCGGGACATTTGAAATTAGTATGCTCCCCAGGGCCTTGTGTTCATAAAGATGCCTTCAATGATTCAGTTGTTATTATCATTTTTAATGGAGGCAATAGTCTATTCACATCAGATAGTTGATGGCCACATGAGTTGTTTATACAAGTCGTTGTTTTATGAGAGAACCTTCTTCAGATGAATTAAAGGTATCAATATATGTATCATGTGGTGATAAGCACATGGAAAATATAACTATCTCAGTAATTTGAAAAACCTAGGATGTTGTTCTGGCATGCTTTCTCTCTTTGTTTTTTTTAATC

Fln Alignment:

Contig754___MARKGLGTDAAVGSLMSSKKRKEYKVTNRFQEGKRPLYAIAFNFIDARYHNIFATAGGSRVTIYQCLEGGAISVLQAYVDDDKDESFYTLSWACDVNGSPLLVAGGHNGIIRVLDVANEKVHKSFVGHGDSVNEIRTQALKPSLILSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDVYRIASCGMDNTVKIWSMKEFWSCVVKSFTWSFFCSSFRLPYVLFGFFIGVVCSYYVYCSRWLGIFFVS*SVDNEVVLWEPYSKEQSTSDGVVDILQKYPVPECDIWFIKFSCDFHFNSMAVGNREGKVYVWELQSSPPNLIARLSHAHCKHPIRQTAISHDGSTILCCCDDGSMWRWDVVQ
A9NWP5_____________MARKGLGTDAAIGSIVSSKKKKEYRVTNRFQEGKRPLYAIAFNFIDARYHNIFATAGGNRVTIYQCLEGGVISVLQAYVDEDKEESFYTLSWACDVNGSPLLVAGGHNGIIRVLDVANEKVHKSFVGHGDSVNEIRTQALKPSLILSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSELYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAAVHSNYVDCTRWLGNFILSKSVDNEVVLWEPYSKEQSTSDGVVDILQKYPVPDCDIWFIKFSCDFHYNSMAVGNREGKVYVWELQSSPPNLIARLQHAQCKSPIRQTAISHDGSTILCCCDDGSMWRWDVVQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain