SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene744

Length: 2761 nt

UniGene Fasta

>sp_v3.0_unigene744
CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGAAATTGTTGCGTCAATCTCAATCACAGTCGATCTGCCTTCAAACTTGTTGCCTCAATCTCCATCACAATCAATTTGCCTTAAAATATTTCGAAGGTAACGTTCTGAGCAACAATCTTTAATGCAAAGCTCGAATCTGGAAGGAGGCGGAGGACCCTTACAAAAGGGTAATCTTGTTGCGGATTCTTCTTCTTCGTTGGAGGGGGAAAGACCCCCGTCTAAAAATATAGAAATGGATGCCACCCATTCCCATTCTGAATCGGAATTGGAGCCCTTGAGGATGGCATCGCGGCTGTATTTGGATTTCGTGGGCGAGGTGGACGTGCTTCTCACTCCCGATCGCATTTCATGGCTTACAACGGGAAATACCAATGCCTCCTCGGATTGTGATATGTCATCTTGCTGGGGCTTAATGGCTGCGACTCAAATGCCAACTGAGGTGTTGTTATCTGATATTTATGCTGTGGAGCTTGCTAGTAGGGGTTCAATTTTTGAGTCAAAATCTGGTGCAGCAACATACAGCTTATTGAGTTGTGTTTCAAAGTTGCATTGTTTTGCTGTACACTTAGTTGAAAAGTCACATAAACGACATTCTGTTTGGGTTCCAAGGGCACTTGTGTTTGGCCATCCAGATCCCAAGACTTGTCAAGAATGGGTCGAACGCATCCATAACTTTCTAAACATAGACGATAAAAGGCCTAAGAAACTCTTGGTTTTTGTAAACCCTCTAAGTGGAAAAAAGCATGCTGTTAAAACTTGGGAAGTAGTTCGTCCTCTTTTTGATCATGCAAAAATAATATTGAAGGTGGTGAAGACAGAGAGAGCTGGTCATGCATTTGATATTATGAAGGAGATCACAACTGAGCAGCTTAACTGTTATGATGGAGCCGTTACTGTGGGTGGAGATGGTTTTTTTAATGAAGTTGTGAATGGGCTTCTTTCATGGAGACATAAAGCTCCTTATCCACCATCTCCTGTAGATGTTGAACATTGCATTCAAGAAAATGCAGGCCAACCCATTGTCCCACATACTGATGCTGTCCAAAATACAGAACTTGGTGCCAGAGCTGTTCAAGACGAAGAAGATCATGCTGAACTTGATTCTCCTCCTTTATGCTATGATAAAGATTCACGTCCTCTTCTTCCAAATTTTGTTGCTTCTAGGATAGAAGCCTCACATTTAAGCTTGCACCAAAGGTTACCGTCTGGGGATGACCCTATTTCTGAGGGAAGGTCTGAGGATAAAAGCTCTAAAGTGAATCTGATGGTTGAATCTTCCAGAACATCACTGAGAGCTCAACATGAAGTACCCAATCCGAGATCGGGATGTGATAACATACAAGGTTCTTGCACAAGTGGAGAAGCAACTACTATACCTTCTTTTCTGAATCCATCATTCAGAATCGGAATTATACCTGCAGGTTCCACTGATACTATAGTGGTTAGCACTACTGGAGCTCGGGATCCTATTACTTCTGCACTACAAATAATCCTTGGTAAAAGGTTACCACTTGATATTGCTCAAGTAGTCAGCTGGAAGAGCAATTCCAAGTCATCTGGCGAGGCACCCTGTGTACGCTATTTAGCTTCTTTTGCAGGGTATGGATTCTATGGCGATGTCATCAGGGAGAGTGAGTCCTATCGGTGGATGGGACCTACACGCTATGATTTTGCAGGAACTAGAGTATTTTTGAGGCATAGATCCTATGAAGCGGAGGTATCTTTCATTGAAGTGCCAGATGAAACTACTCATCACATTAGAAGTGAGCTGGCAAGTTGCAGAAACGAGGCAGTTCAAAATTCAAAGAAAGTGAAGTGTCTTATGAATTGTGCTGTTTGTGCTAATGGTATACAGTCTGATGACCCTATAGTATTTAGAAGTGGAGTGGAAACATTACCACAGACTAAACCACAAGCCTCAAAGTGGTTGAAATCAAAAGGACACATTCTTAGTGTGGGTGCCGCTTTGATGTCTTGTCGGAATGATAAAGCACCAGATGGGGTTGTGGCTGATGCACACCTGGCTGATGGTTTTCTGCATCTTGTTCTAATTAAAGATTGCTCACATGTTTCTTATCTAAGGCATCTTTTGCGACTTACAAGGAAGGATGCAGATCCTCTAGACTTCAAGTTTATTGAGCACCATAAAACAACGGCTTTCACTTTTGTATCTCATGGTGAAGAAAGTATGTGGAATGTGGACGGCGAGGTTTTCCCTGCACGCCAACTATCTGCCCAAGTATTTCGAGGTTTGATTAGTTTATTTGCTACCGGTCCTGAACTTTGATGTACTGCTCTCTATATCACCAAATTCTTTGTTTAAATCTGGGGTCATCTCCTCCAATTTAAACCATTATGTATGCTACTGTAATCAGTTTTCCGACTGAACAAGAGATTGTTTTGTTTGAATAAAGCCACACATCACGAACATTAGTTGTATTCTCTGAAGATGTAAGATCCTGTTTTGGGGAAACACGTCCGAAAACTGACTATACTTGATACTGATTCACAAGTAAATAATACACTTTGAAATGGATTTAGCCATCCAGTATCATACTAAGATAGGCATTTTCAGAGAAGAGTTGGAATTGCTTGCGATGGTTTCCAAAGCAGACATGTTGGCCTATATTGGGAGGGGAAGCGCATATCTCTGCTGTAACCCCCAGTAATGTATAGCTCTACCTTTTGTGCACTAATAAAATATGAGATGTATTCTTACAGTCTT

Ace file of the UniGene sp_v3.0_unigene744

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	diacylglycerol kinase family protein [Arabidopsis thaliana] gb\|AAQ62904.1\| ceramide kinase [Arabidopsis thaliana] gb\|AED96062.1\| diacylglycerol kinase family protein [Arabidopsis thaliana]	-	-	0.0	43%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	48%
Sma3	Ceramide kinase	-	-	9.576e-10	-

Source	Gene names
Sma3	At5g51290; CERK; GSVIVT00030833001; OJ1003_B06.39; Os02g0656200; OsI_08331; OsJ_07789; P0519E06.23; PHYPADRAFT_158844; PHYPADRAFT_74586; POPTRDRAFT_827488; RCOM_1501030; VITISV_000107; VITISV_008044;

Source	GOs	Term	Type	e value	Identity
Sma3	diacylglycerol kinase activity	GO:0004143	Molecular Function	0.0	-
Sma3	activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	GO:0007205	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Diacylglycerol kinase, catalytic domain	IPR001206	-	0.0	-
Sma3	Pentaxin	IPR001759	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6I2T2

Fln msg: your sequence is longer than subject: 722 - 562

Fln protein: MQSSNLEGGGGPLQKGNLVADSSSSLEGERPPSKNIEMDATHSHSESELEPLRMASRLYLDFVGEVDVLLTPDRISWLTTGNTNASSDCDMSSCWGLMAATQMPTEVLLSDIYAVELASRGSIFESKSGAATYSLLSCVSKLHCFAVHLVEKSHKRHSVWVPRALVFGHPDPKTCQEWVERIHNFLNIDDKRPKKLLVFVNPLSGKKHAVKTWEVVRPLFDHAKIILKVVKTERAGHAFDIMKEITTEQLNCYDGAVTVGGDGFFNEVVNGLLSWRHKAPYPPSPVDVEHCIQENAGQPIVPHTDAVQNTELGARAVQDEEDHAELDSPPLCYDKDSRPLLPNFVASRIEASHLSLHQRLPSGDDPISEGRSEDKSSKVNLMVESSRTSLRAQHEVPNPRSGCDNIQGSCTSGEATTIPSFLNPSFRIGIIPAGSTDTIVVSTTGARDPITSALQIILGKRLPLDIAQVVSWKSNSKSSGEAPCVRYLASFAGYGFYGDVIRESESYRWMGPTRYDFAGTRVFLRHRSYEAEVSFIEVPDETTHHIRSELASCRNEAVQNSKKVKCLMNCAVCANGIQSDDPIVFRSGVETLPQTKPQASKWLKSKGHILSVGAALMSCRNDKAPDGVVADAHLADGFLHLVLIKDCSHVSYLRHLLRLTRKDADPLDFKFIEHHKTTAFTFVSHGEESMWNVDGEVFPARQLSAQVFRGLISLFATGPEL*

Protein Length: 723

Fln nts: CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGAAATTGTTGCGTCAATCTCAATCACAGTCGATCTGCCTTCAAACTTGTTGCCTCAATCTCCATCACAATCAATTTGCCTTAAAATATTTCGAAGGTAACGTTCTGAGCAACAATCTTTA_-_ATGCAAAGCTCGAATCTGGAAGGAGGCGGAGGACCCTTACAAAAGGGTAATCTTGTTGCGGATTCTTCTTCTTCGTTGGAGGGGGAAAGACCCCCGTCTAAAAATATAGAAATGGATGCCACCCATTCCCATTCTGAATCGGAATTGGAGCCCTTGAGGATGGCATCGCGGCTGTATTTGGATTTCGTGGGCGAGGTGGACGTGCTTCTCACTCCCGATCGCATTTCATGGCTTACAACGGGAAATACCAATGCCTCCTCGGATTGTGATATGTCATCTTGCTGGGGCTTAATGGCTGCGACTCAAATGCCAACTGAGGTGTTGTTATCTGATATTTATGCTGTGGAGCTTGCTAGTAGGGGTTCAATTTTTGAGTCAAAATCTGGTGCAGCAACATACAGCTTATTGAGTTGTGTTTCAAAGTTGCATTGTTTTGCTGTACACTTAGTTGAAAAGTCACATAAACGACATTCTGTTTGGGTTCCAAGGGCACTTGTGTTTGGCCATCCAGATCCCAAGACTTGTCAAGAATGGGTCGAACGCATCCATAACTTTCTAAACATAGACGATAAAAGGCCTAAGAAACTCTTGGTTTTTGTAAACCCTCTAAGTGGAAAAAAGCATGCTGTTAAAACTTGGGAAGTAGTTCGTCCTCTTTTTGATCATGCAAAAATAATATTGAAGGTGGTGAAGACAGAGAGAGCTGGTCATGCATTTGATATTATGAAGGAGATCACAACTGAGCAGCTTAACTGTTATGATGGAGCCGTTACTGTGGGTGGAGATGGTTTTTTTAATGAAGTTGTGAATGGGCTTCTTTCATGGAGACATAAAGCTCCTTATCCACCATCTCCTGTAGATGTTGAACATTGCATTCAAGAAAATGCAGGCCAACCCATTGTCCCACATACTGATGCTGTCCAAAATACAGAACTTGGTGCCAGAGCTGTTCAAGACGAAGAAGATCATGCTGAACTTGATTCTCCTCCTTTATGCTATGATAAAGATTCACGTCCTCTTCTTCCAAATTTTGTTGCTTCTAGGATAGAAGCCTCACATTTAAGCTTGCACCAAAGGTTACCGTCTGGGGATGACCCTATTTCTGAGGGAAGGTCTGAGGATAAAAGCTCTAAAGTGAATCTGATGGTTGAATCTTCCAGAACATCACTGAGAGCTCAACATGAAGTACCCAATCCGAGATCGGGATGTGATAACATACAAGGTTCTTGCACAAGTGGAGAAGCAACTACTATACCTTCTTTTCTGAATCCATCATTCAGAATCGGAATTATACCTGCAGGTTCCACTGATACTATAGTGGTTAGCACTACTGGAGCTCGGGATCCTATTACTTCTGCACTACAAATAATCCTTGGTAAAAGGTTACCACTTGATATTGCTCAAGTAGTCAGCTGGAAGAGCAATTCCAAGTCATCTGGCGAGGCACCCTGTGTACGCTATTTAGCTTCTTTTGCAGGGTATGGATTCTATGGCGATGTCATCAGGGAGAGTGAGTCCTATCGGTGGATGGGACCTACACGCTATGATTTTGCAGGAACTAGAGTATTTTTGAGGCATAGATCCTATGAAGCGGAGGTATCTTTCATTGAAGTGCCAGATGAAACTACTCATCACATTAGAAGTGAGCTGGCAAGTTGCAGAAACGAGGCAGTTCAAAATTCAAAGAAAGTGAAGTGTCTTATGAATTGTGCTGTTTGTGCTAATGGTATACAGTCTGATGACCCTATAGTATTTAGAAGTGGAGTGGAAACATTACCACAGACTAAACCACAAGCCTCAAAGTGGTTGAAATCAAAAGGACACATTCTTAGTGTGGGTGCCGCTTTGATGTCTTGTCGGAATGATAAAGCACCAGATGGGGTTGTGGCTGATGCACACCTGGCTGATGGTTTTCTGCATCTTGTTCTAATTAAAGATTGCTCACATGTTTCTTATCTAAGGCATCTTTTGCGACTTACAAGGAAGGATGCAGATCCTCTAGACTTCAAGTTTATTGAGCACCATAAAACAACGGCTTTCACTTTTGTATCTCATGGTGAAGAAAGTATGTGGAATGTGGACGGCGAGGTTTTCCCTGCACGCCAACTATCTGCCCAAGTATTTCGAGGTTTGATTAGTTTATTTGCTACCGGTCCTGAACTTTGA___TGTACTGCTCTCTATATCACCAAATTCTTTGTTTAAATCTGGGGTCATCTCCTCCAATTTAAACCATTATGTATGCTACTGTAATCAGTTTTCCGACTGAACAAGAGATTGTTTTGTTTGAATAAAGCCACACATCACGAACATTAGTTGTATTCTCTGAAGATGTAAGATCCTGTTTTGGGGAAACACGTCCGAAAACTGACTATACTTGATACTGATTCACAAGTAAATAATACACTTTGAAATGGATTTAGCCATCCAGTATCATACTAAGATAGGCATTTTCAGAGAAGAGTTGGAATTGCTTGCGATGGTTTCCAAAGCAGACATGTTGGCCTATATTGGGAGGGGAAGCGCATATCTCTGCTGTAACCCCCAGTAATGTATAGCTCTACCTTTTGTGCACTAATAAAATATGAGATGTATTCTTACAGTCTT

Fln Alignment:

Contig744___TEVLLSDIYAVELASRGSIFESKSGAATYSLLSCVSKLHCFAVHLVEKSHKRHSVWVPRALVFGHPDPKTCQEWVERIHNFLNIDDKRPKKLLVFVNPLSGKKHAVKTWEVVRPLFDHAKIILKVVKTERAGHAFDIMKEITTEQLNCYDGAVTVGGDGFFNEVVNGLLSWRHKAPYPPSPVDVEHCIQENAGQPIVPHTDAVQNTELGARAVQDEEDHAELDSPPLCYDKDSRPLLPNFVASRIEASHLSLHQRLPSGDDPISEGRSEDKSSKVNLMVESSRTSLRAQHEVPNPRSGCDNIQGSCTSGEATTIPSFLNPSFRIGIIPAGSTDTIVVSTTGARDPITSALQIILGKRLPLDIAQVVSWKSNSKSSGEAPCVRYLASFAGYGFYGDVIRESESYRWMGPTRYDFAGTRVFLRHRSYEAEVSFIEVPDETTHHIRSELASCRNEA---VQNSKKVKCLMNCAVCANGIQSDDPIVFRSGVETLPQTKPQASKWLKSKGHILSVGAALMSCRNDKAPDGVVADAHLADGFLHLVLIKDCSHVSYLRHLLRLTRKDADPLDFKFIEHHKTTAFTFVSHGEESMWNVDGEVFPARQLSAQVFRGLISLFATGPEL
F6I2T2_____________TEIKFSDVYAVEFINWGLIHESVLSNAGGCLIRHESEMYRFTVHGVQRSKTRPSLLVLAVYTFGHKDLQMCHMWVNRINALLKMETGRPKSLLVFVHPLSGKGSGCRTWQTVAPIFSHAKVKTKVIVTQRAGHAFDVMASISNEELNSHDGVIAVGGDGFFNEILNGLLSSRLKAPYPPAPADFVHSVGSN--DSVLVH------------------DPNETDVETSCENEDHSPLLSSPRSNPIELSNL----------------RTEEGS--------------------------CDRDQDSKFS-----LP---NERFRFGIIPAGSTDAIVICSTGTRDPVTSALHIVLGKRVCLDIAQVVRWKTTSTSK-DVPCVRYAASFVGYGFYGDVITESEKYRWMGPKRYDYAGTKVFLRHRSYEAEVACLEVKSEKTSASSETVASKRYGLWLLPKKSERVVCRVNCSTC----NTNRSCVSTSVPPEAPSSDPEEQRWLKSKGSFLSVGAAIISCRNERAPDGLVADAHLSDGFLHLILIKNCPHASYLWHLTQLARRGGNPLNFEFVEHYKTTAFTFTSSSDDSVWNLDGEPFQAHKLSAQVFRGLVNLFASGPEV

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1029	33		66		0.997452
1076	33		66		0.997452
1102	66			33	0.997452
1114		66		33	0.997452
1587		75	25		0.996473
1625		25	75		0.996473
1626	25	75			0.996473
1889	75			25	0.996473
1983	33			66	0.997452
1985	33			66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
220	231	TTC TTC TTC TTC	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain