SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene715

Length: 3097 nt

UniGene Fasta

>sp_v3.0_unigene715
TGCTCGGATTGGAACCACCCTTAGACTCATATTTTGAAGCAGAGTTGAAGACAGAGAGTGAGGTCTACACCAAAGTGTAGATCCAGATATGGGTTAGGTTCCAGAGAATAACTAAATTCTTATCTGAGGTTTTCCAGAATTTTGAAATCTGATTTACGTCTGTGTAGACGACTGCAGTTCTGATTTCACATTGTTGAAAATCACAAATCTTATTCGAGTTTCAATGAAAAGCTTGATGATTTTGATTTTTATCTGGCAAGGTTCAGGAACCAAATTGAAGTACGTGTTTATTGGGCATCGTCTTTGTCACTGTGGCTTGGGATGTCCGTAGGGCAACTTTCAATTATAACAGTCATTTGGGTAATTTCAGGGTTTCGTTCACAGGTGTCTGACTTCGTCCAATGATTTCTTTTGGCGAAGCCCTCTAGCTGCCTGCCCTCTAGAGGTCGACAAAATATGTCGATCTCTAACTGTCTTGAAGAGAGGACAGCTCGGTCGATACTGGTGCATGTTCTTCTCTGCTCGGTTTACAGTATATACTTGACGTCTGTGTTGGGTTTCAGAGAATGTTTGTTTGGTGCTCTGGTCCTAGAAGAGCCCCAACATCTAAGTTGAGTTTGATAGAAAAACTTCAGTGCAGATTGTGTATGTGTAGACTTCTGAAATCTAAGCCGATTTTTCCACAAAAACTTCAATTGCTGCTTAAGTCTACCTAGAGTTGTAAAATCAGATATTGAGTATCTGCAACATTCGTAAATGTCATATTTGGTTGTGCCTTTAACTGCAAAACCTGATGCGCACAAAGAAGGCTTCCGTTATGCTATATATGTGAAGTTATTGCGGAGAATTGGAAAAAATGATGTGACGTTTTTCTGAATCGGAAACTTTTCCTTAATCAGGAGTCTACGATTTTGATATCTGACAATGGATAACATTGTTATCCATCGTAACGCATCAATCAGCATTCTTGGTGATGAGATCCTTGTAACTATTCTTGATAAACTACAGGACCCTATAGACAGAAAGTCGTGGTGCCTGGTCTGCAAACATTTTTTTTTTTTGGAGGCCAGCTATAGGAAGAAAGTACAATTGATTCGCTCGGAATTGCTTCCGAGAATTTTGAGAAGATACAGCAAGATTGAATGTTTGGACTTATCTCTGTGCTCTCAGATCACAGACGAGGCTTTGGGGCACGTGGCTCAGATTATTGGGAATCATTTACTTTCCATCAGCCTTTCACAGCTGAGGAGGTTTACCCACTTGGGCCTTGCTGAGGTGGTTAAGAGTTGTCAGTCTTTGGTCGAAATCGATCTTTCCAATTGCACTGAAATAACCGATTATGATGCAGAAGCCATAGCACAGGCCCAGAAGTTGCAATCTTTGAAACTAGTGAAATGCAAGCAGATCACTGACATAGGTCTCGGATGCATAGCTGTTGGATGCAGTCAATTACAGACATTGAATCTCAAGTGGTGCGTGGGTGTCACAGACCTTGGAGTTGAGCTGGTTGTGGTAAAATGCAAGGATCTACGCAATCTTGATCTCTCTTATTTACAGATAACAAACAAATGTCTTGCCTCAATTGAGCATCTGAAGCATCTCGAGAACTTAGCATTAGTTGGATGTGTTGGTGTGGGTGATGACGGCCTTACCTATCTCAGTAAATCTTTGCAGAGGCTTGATGTTTCAAAGTGTCGGAATGTCAGCTGCACAGGAATAATTTCCCTTGCAAGTGTTTCCTCACACTTGTGCCAGCTCACTCTTGCCTATTGCATACCAGTTACAAATGCACTTCTTGCCAGCTTTCAACATTTTGACAGACTGCAAACAATCAAATTTGATGGCTGTATGATTTCTAGCACTGCACTTGAGTCTATTGGGAAAAGTTGCAAGTCTCTGAGGGAAATAAGCTTAAGCAAGTGCATTGGAGTCACGGATAATGGAATATCTGCAATCGCAGCATGCTGTACAGAGCTGAACAAGTTAGACCTCACCTGCTGTCGTGATCTAACTGACATTGCTATTAAGGCTGTTGCAACATCATGTAGATATCTCTCCTGCCTCATGATGGAATCCTGTGGCTTGGTTACGGAAAGAAGTTTGACTATGCTAGGAGAGGGATGTCCTTTACTTCGAGAACTTGACCTTACCGATTGTCGCATAAACGATAAAGGATTAAAATCCATTTCTAGGTGCTCTGAATTGATCACATTAAATCTAGGATTATGCTTAAATATATCTGCCGAGGGGATCATCCATATAGGAGCCTGTTGCTCAAATCTCCAAGAACTTGATTTGTACCGATCTGTAGGAATTCGTGATGCTGGATTAGAAGCAATTGCTAATGGTTGCCCGAGGTTAAGGAGTATTAATCTTTCATACTGCATAAATGTTACTGATTATGCAATGAAATCTCTCTCCCGATTGAAGAAACTTCATAATCTTGAAGTTCGAGGTTGTCCTGGCATCTCATCTGCTGGTCTTTCTGCAATAGCTTTAGGATGTAAGCGGTTAGTTGCATTGGATGTCAAAGGTTGTCACAATATTGATGATGCAGGAATATTGGCAATAACTAACTCATGCCAAAATTTACGACAGATAAATCTCTCTTACTGCCCAATCTCAGATGTTGGGTTGTCGACGTTGGCCAGGCTTAGTTGCTTGCAGAATATGAAGCTGGTTCATTTGAAGAATGTAACAGTGAATAGTTTTGCATCGGCTTTGCTGGATTGCGAGAGTTTAAAGAAACTCAAGCTTTTTGAAGATTTAAAGTTCATTTTACCACGTAGTCTAATCGAGTGCTTGGAAGCCCGTGGGTGCATTATTCGTTGGATGGATAAGCCTTTTGTGATTTAACTTGCATATATCGTATATGATCCAATACTGGAGGTTTTTAGAAAATGTACTATGTATCTGAAATTTTTTTCATAGGAACATCATGTTGCATACAGAAAGCACATTCATGAATGCTTGGAAATTGTTTGATCCTATTGTACTCTGAATTTTATGGGCACGCAAAATTTCAGATAGAAGGCATCTTGTAAGATGGAAATGAACAACCTTTTCTATCATATATACATTGAAGAGTTGGGTTTGT

Ace file of the UniGene sp_v3.0_unigene715

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F-box/LRR-repeat protein 3 [Arabidopsis thaliana] sp\|Q8RWU5.1\|FBL3_ARATH RecName: Full=F-box/LRR-repeat protein 3 gb\|AAM14053.1\| putative F-box protein family, AtFBL3 [Arabidopsis thaliana] gb\|AAM67471.1\| putative F-box family protein AtFBL3 [Arabidopsis	-	-	0.0	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	29%
Sma3	Leucine Rich Repeat family protein, expressed	-	-	6.67e-06	-

Source	Gene names
Sma3	At5g01720; At5g27920; At5g27920/F14I23_80; F7A7.240; FBL3; GSVIVT00022689001; GSVIVT00023993001; GSVIVT00037420001; LOC_Os11g01780; LOC_Os12g01760; LOC_Os12g36670; Os12g0108500; Os12g0552700; OsI_34818; OsI_37183; OsJ_32666; OsJ_34957; OsJ_36445; PHYPADRA

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease A	IPR001427	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Leucine-rich repeat, cysteine-containing subtype	IPR006553	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G01720.1	RNI-like superfamily protein chr5:267118-270391 REVERSE LENGTH=665	49%
RefSeq	Arabidopsis thaliana	NP_568094.2	F-box/LRR-repeat protein 3 [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002323638.1	predicted protein [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A998

Fln msg: your sequence is longer than subject: 644 - 335

Fln protein: MDNIVIHRNASISILGDEILVTILDKLQDPIDRKSWCLVCKHFFFLEASYRKKVQLIRSELLPRILRRYSKIECLDLSLCSQITDEALGHVAQIIGNHLLSISLSQLRRFTHLGLAEVVKSCQSLVEIDLSNCTEITDYDAEAIAQAQKLQSLKLVKCKQITDIGLGCIAVGCSQLQTLNLKWCVGVTDLGVELVVVKCKDLRNLDLSYLQITNKCLASIEHLKHLENLALVGCVGVGDDGLTYLSKSLQRLDVSKCRNVSCTGIISLASVSSHLCQLTLAYCIPVTNALLASFQHFDRLQTIKFDGCMISSTALESIGKSCKSLREISLSKCIGVTDNGISAIAACCTELNKLDLTCCRDLTDIAIKAVATSCRYLSCLMMESCGLVTERSLTMLGEGCPLLRELDLTDCRINDKGLKSISRCSELITLNLGLCLNISAEGIIHIGACCSNLQELDLYRSVGIRDAGLEAIANGCPRLRSINLSYCINVTDYAMKSLSRLKKLHNLEVRGCPGISSAGLSAIALGCKRLVALDVKGCHNIDDAGILAITNSCQNLRQINLSYCPISDVGLSTLARLSCLQNMKLVHLKNVTVNSFASALLDCESLKKLKLFEDLKFILPRSLIECLEARGCIIRWMDKPFVI*

Protein Length: 645

Fln nts: TGCTCGGATTGGAACCACCCTTAGACTCATATTTTGAAGCAGAGTTGAAGACAGAGAGTGAGGTCTACACCAAAGTGTAGATCCAGATATGGGTTAGGTTCCAGAGAATAACTAAATTCTTATCTGAGGTTTTCCAGAATTTTGAAATCTGATTTACGTCTGTGTAGACGACTGCAGTTCTGATTTCACATTGTTGAAAATCACAAATCTTATTCGAGTTTCAATGAAAAGCTTGATGATTTTGATTTTTATCTGGCAAGGTTCAGGAACCAAATTGAAGTACGTGTTTATTGGGCATCGTCTTTGTCACTGTGGCTTGGGATGTCCGTAGGGCAACTTTCAATTATAACAGTCATTTGGGTAATTTCAGGGTTTCGTTCACAGGTGTCTGACTTCGTCCAATGATTTCTTTTGGCGAAGCCCTCTAGCTGCCTGCCCTCTAGAGGTCGACAAAATATGTCGATCTCTAACTGTCTTGAAGAGAGGACAGCTCGGTCGATACTGGTGCATGTTCTTCTCTGCTCGGTTTACAGTATATACTTGACGTCTGTGTTGGGTTTCAGAGAATGTTTGTTTGGTGCTCTGGTCCTAGAAGAGCCCCAACATCTAAGTTGAGTTTGATAGAAAAACTTCAGTGCAGATTGTGTATGTGTAGACTTCTGAAATCTAAGCCGATTTTTCCACAAAAACTTCAATTGCTGCTTAAGTCTACCTAGAGTTGTAAAATCAGATATTGAGTATCTGCAACATTCGTAAATGTCATATTTGGTTGTGCCTTTAACTGCAAAACCTGATGCGCACAAAGAAGGCTTCCGTTATGCTATATATGTGAAGTTATTGCGGAGAATTGGAAAAAATGATGTGACGTTTTTCTGAATCGGAAACTTTTCCTTAATCAGGAGTCTACGATTTTGATATCTGACA_-_ATGGATAACATTGTTATCCATCGTAACGCATCAATCAGCATTCTTGGTGATGAGATCCTTGTAACTATTCTTGATAAACTACAGGACCCTATAGACAGAAAGTCGTGGTGCCTGGTCTGCAAACATTTTTTTTTTTTGGAGGCCAGCTATAGGAAGAAAGTACAATTGATTCGCTCGGAATTGCTTCCGAGAATTTTGAGAAGATACAGCAAGATTGAATGTTTGGACTTATCTCTGTGCTCTCAGATCACAGACGAGGCTTTGGGGCACGTGGCTCAGATTATTGGGAATCATTTACTTTCCATCAGCCTTTCACAGCTGAGGAGGTTTACCCACTTGGGCCTTGCTGAGGTGGTTAAGAGTTGTCAGTCTTTGGTCGAAATCGATCTTTCCAATTGCACTGAAATAACCGATTATGATGCAGAAGCCATAGCACAGGCCCAGAAGTTGCAATCTTTGAAACTAGTGAAATGCAAGCAGATCACTGACATAGGTCTCGGATGCATAGCTGTTGGATGCAGTCAATTACAGACATTGAATCTCAAGTGGTGCGTGGGTGTCACAGACCTTGGAGTTGAGCTGGTTGTGGTAAAATGCAAGGATCTACGCAATCTTGATCTCTCTTATTTACAGATAACAAACAAATGTCTTGCCTCAATTGAGCATCTGAAGCATCTCGAGAACTTAGCATTAGTTGGATGTGTTGGTGTGGGTGATGACGGCCTTACCTATCTCAGTAAATCTTTGCAGAGGCTTGATGTTTCAAAGTGTCGGAATGTCAGCTGCACAGGAATAATTTCCCTTGCAAGTGTTTCCTCACACTTGTGCCAGCTCACTCTTGCCTATTGCATACCAGTTACAAATGCACTTCTTGCCAGCTTTCAACATTTTGACAGACTGCAAACAATCAAATTTGATGGCTGTATGATTTCTAGCACTGCACTTGAGTCTATTGGGAAAAGTTGCAAGTCTCTGAGGGAAATAAGCTTAAGCAAGTGCATTGGAGTCACGGATAATGGAATATCTGCAATCGCAGCATGCTGTACAGAGCTGAACAAGTTAGACCTCACCTGCTGTCGTGATCTAACTGACATTGCTATTAAGGCTGTTGCAACATCATGTAGATATCTCTCCTGCCTCATGATGGAATCCTGTGGCTTGGTTACGGAAAGAAGTTTGACTATGCTAGGAGAGGGATGTCCTTTACTTCGAGAACTTGACCTTACCGATTGTCGCATAAACGATAAAGGATTAAAATCCATTTCTAGGTGCTCTGAATTGATCACATTAAATCTAGGATTATGCTTAAATATATCTGCCGAGGGGATCATCCATATAGGAGCCTGTTGCTCAAATCTCCAAGAACTTGATTTGTACCGATCTGTAGGAATTCGTGATGCTGGATTAGAAGCAATTGCTAATGGTTGCCCGAGGTTAAGGAGTATTAATCTTTCATACTGCATAAATGTTACTGATTATGCAATGAAATCTCTCTCCCGATTGAAGAAACTTCATAATCTTGAAGTTCGAGGTTGTCCTGGCATCTCATCTGCTGGTCTTTCTGCAATAGCTTTAGGATGTAAGCGGTTAGTTGCATTGGATGTCAAAGGTTGTCACAATATTGATGATGCAGGAATATTGGCAATAACTAACTCATGCCAAAATTTACGACAGATAAATCTCTCTTACTGCCCAATCTCAGATGTTGGGTTGTCGACGTTGGCCAGGCTTAGTTGCTTGCAGAATATGAAGCTGGTTCATTTGAAGAATGTAACAGTGAATAGTTTTGCATCGGCTTTGCTGGATTGCGAGAGTTTAAAGAAACTCAAGCTTTTTGAAGATTTAAAGTTCATTTTACCACGTAGTCTAATCGAGTGCTTGGAAGCCCGTGGGTGCATTATTCGTTGGATGGATAAGCCTTTTGTGATTTAA___CTTGCATATATCGTATATGATCCAATACTGGAGGTTTTTAGAAAATGTACTATGTATCTGAAATTTTTTTCATAGGAACATCATGTTGCATACAGAAAGCACATTCATGAATGCTTGGAAATTGTTTGATCCTATTGTACTCTGAATTTTATGGGCACGCAAAATTTCAGATAGAAGGCATCTTGTAAGATGGAAATGAACAACCTTTTCTATCATATATACATTGAAGAGTTGGGTTTGT

Fln Alignment:

Contig715___LRRYSKIECLDLSLCSQITDEALGHVAQIIGNHLLSISLSQLRRFTHLGLAEVVKSCQSLVEIDLSNCTEITDYDAEAIAQAQKLQSLKLVKCKQITDIGLGCIAVGCSQLQTLNLKWCVGVTDLGVELVVVKCKDLRNLDLSYLQITNKCLASIEHLKHLENLAL
D5A998_____________ISRCSELITLNLGFCLNISAEGIYHIGACCSN-LQELNLYRSVGTGDAGLEAIANGCPRLKSINISYCINVTDNSMKSISRLQKLHNLEIRGCPGISSAGLSAIALGCKRIVALDVKGCYNIDDAGILAIADSCQNLRQINVSYCPISDVGLSTLARLSCLQNMKL

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
1485		16		83	0.994512
1569	80	20			0.995493
1800	33	66			0.997452
2110	40		60		1.0
2199	28			71	1.0
2200		71		28	1.0
2338		83		16	0.994512
2524		11		88	0.923564
2525	11		88		0.923564
2535		18	81		0.999994
2538		18		81	0.999994
2541		81	18		0.999994
2545	81	18			0.999994
2549			18	81	0.999994
2551	81	18			0.999994
2559			81	18	0.999994
2560		18	81		0.999994
2921	85			14	0.999981
2964		81		18	0.999994
3032	83	16			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain