SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene704

Length: 2043 nt

UniGene Fasta

>sp_v3.0_unigene704
GATAGGCATGTTGCATTACCATCGGTATAGCGCCAGTTGTTACTGGCAAGGACTTTGCAATATTGAATCCGATAGGCAGTAATATATGTGACCGCTGTTTTGACCCGGCCCCTCTGATTTCGCACTGCACGATTCTGAGATCCAAAGGCCTGCACTGACTTTGACTAATCACGAGATCCTTTGCACTCGAATATTGTTGCGTACACCATGAAATCTCTGAAAATTCTTGATAAGTCTTGAGCAACCCAACTTGGGCGTTTTGTGTTGGGAAGGTTACGTCCTGGGGGTTGTATTTCGTGAACGGAATACATACCTAGGTGCGTGAAACGCCAGGGAACTACATTTTCTCAATTCTTGGTGCTCATTTCAGTCGCTTTCCAGGCTGAGGGTAATATAGCTTGTATCGCCATTATCTTCTTGGAATTCCTTGTACTGATCGAATAAAAGAGAAGGCCGGCCTTGTTGAACAGTATATTCAATTTTAGAAAGTTACAGGAATGGCAGCTGCCAATAGTCAATCGTGTGTTCCTCCGGGGTTTAGGTTTCATCCCACAGACGAAGAACTTCTGCATTACTACTTGAGGAAGAAGGTCTCTTATGAGATGATTGACCTCAATGTTATTCGGGATGTCGATCTGAACAAACTTGAGCCCTGGGATCTCCATGAGACATGCAAAATTGGGTCTGCTCCACAGGATGAATGGTACTTCTTCAGTCATAAAGACAAGAAATACCCAACGGGCACTCGCACTAATAGAGCAACAGCTGCAGGCTTCTGGAAGGCAACTGGCAGGGATAAAATCATATTTATGAACTGTAAGCGAATTGGCATGAGGAAAACACTTGTATTCTACACAGGACGAGCCCCTCATGGCCAAAAAACAGAATGGATTATGCATGAATACCGTCTAGATGACAAGGAAAAACTACAGGTAAATGAGGATGGATGGGTTGTGTGCCGTGTATTCAAGAAAAGGATGCACAACAAAGACGCCAAAGACATTAACACTGAACGTGAACGTTCAAGTCCAAGTGGAAATGATGAAGAAAGAAGTGCTCATGCCCTACCACAGCTCATGGATTTCCCCTCTGGGGAGCAAGTGCTCCATCAATATAATCACCAACATCTTGACCTAGGCAAGCCACCACCTCAAGCAAGATACAGTTTTTCCCATGATTTATTTGCTCAGATGTCAGATTTAAAACCCCTAGATGGGGCCACCTGCAACCCTAGTTCTACAGTTATCAAAAGCTTCATTCCACAAAGCCTGCTACACATGAATAACTCAAGGCGCCCCCAGTCAATCAATATGCTTATGGGGCATCTTCCTGAAGGACCACAGATTAAGCTCACTGCAAACGACTTTAGGGAAGATCAGCGTTCAAATGATTGGACTTTGTTGGACAGTCTTATGGGCTCCCATGTCGATCAAACAGAGCCAAATAAACAAATGAGATATAACGATCATCCCCAGGCTTTGGATGGATCTTCACATGGATTGGCACTTGGGGTTAACCGATATGATAATAATCACTATTCCAGCGCTGGAATCGAATACTGGAACTTCGAAAAATAAAGCCGGACCATATAAGGTCGTAATGGGGATTATGGCATATGGAACAGCGCCTTCGATTTTAGCCATTCTTGCAAGTTTACACAGTCAACGATATATGTTTACTATTGAATATGTATATAGTATTGTACTGCCAAGTGTTTTTTCTACTAGCGTTATGCAATATTTTTTTGCATCATATAGCTGAGCAGGTTGATGTAACCTTAATAATATCTATGCTGGATACTGTACCCAAATTCTTATATTTAGCTTTCCGTTTTGCAGAAACAAAATAAAGTGCTGTGCTTGTTTAAAGTCGCTTGCTTGATAGGGCGTCGGCTTCTTGATCTTGAGCCAATTGGGTATATAGGGAAGAAGCGTTAATGTGAGTAACAGTACTCTCATTTTAACATATTTATGTGATAAAGGATTTTTTAGTTGTACAGATCTATTTTGGGGAAGAGTTAATGTGAGTGGGTATTTTTTAATC

Ace file of the UniGene sp_v3.0_unigene704

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	No apical meristem (NAM) protein n=1 Tax=Medicago truncatula RepID=A2Q3I9_MEDTR	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Sma3	NAC domain protein, IPR003441	-	-	-

Source	Gene names
Sma3	131L1.6; 134P10.2; 9C20.2; AT4g10350; AT4g36160; At1g12260; At1g32770; At1g33280; At1g54330; At1g65910; At1g69490; At1g71930; At1g76420; At1g79580; At2g18060; At2g24430; At2g46770; At3g03200; At3g04060; At3g15170; At3g17730; At3g29035; At3g61910; At4g1035

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	specific transcriptional repressor activity	GO:0016566	Molecular Function	-
Sma3	transcription regulator activity	GO:0030528	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to cytokinin stimulus	GO:0009735	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to brassinosteroid stimulus	GO:0009741	Biological Process	-
Sma3	lignin biosynthetic process	GO:0009809	Biological Process	-
Sma3	multidimensional cell growth	GO:0009825	Biological Process	-
Sma3	secondary cell wall biogenesis	GO:0009834	Biological Process	-
Sma3	anther dehiscence	GO:0009901	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	meristem initiation	GO:0010014	Biological Process	-
Sma3	fruit dehiscence	GO:0010047	Biological Process	-
Sma3	primary shoot apical meristem specification	GO:0010072	Biological Process	-
Sma3	xylem development	GO:0010089	Biological Process	-
Sma3	leaf senescence	GO:0010150	Biological Process	-
Sma3	formation of organ boundary	GO:0010160	Biological Process	-
Sma3	organ boundary specification between lateral organs and the meristem	GO:0010199	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	secondary shoot formation	GO:0010223	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-
Sma3	gynoecium development	GO:0048467	Biological Process	-
Sma3	regulation of timing of organ formation	GO:0048504	Biological Process	-
Sma3	lateral root development	GO:0048527	Biological Process	-
Sma3	negative regulation of cell division	GO:0051782	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK	IPR000550	-	-
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3	Cytochrome c oxidase biogenesis protein Cmc1-like	IPR013892	-	-
Sma3	Glycoside hydrolase, family 9, active site	IPR018221	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G79580.1	SMB, ANAC033 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein chr1:29941020-29942925 REVERSE LENGTH=371	49%
RefSeq	Arabidopsis thaliana	NP_974179.1	protein SOMBRERO [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002311276.1	NAC domain protein, IPR003441 [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLZ9

Fln msg: your sequence is shorter than subject: 360 - 392

Fln protein: MAAANSQSCVPPGFRFHPTDEELLHYYLRKKVSYEMIDLNVIRDVDLNKLEPWDLHETCKIGSAPQDEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKIIFMNCKRIGMRKTLVFYTGRAPHGQKTEWIMHEYRLDDKEKLQVNEDGWVVCRVFKKRMHNKDAKDINTERERSSPSGNDEERSAHALPQLMDFPSGEQVLHQYNHQHLDLGKPPPQARYSFSHDLFAQMSDLKPLDGATCNPSSTVIKSFIPQSLLHMNNSRRPQSINMLMGHLPEGPQIKLTANDFREDQRSNDWTLLDSLMGSHVDQTEPNKQMRYNDHPQALDGSSHGLALGVNRYDNNHYSSAGIEYWNFEK*

Protein Length: 361

Fln nts: GATAGGCATGTTGCATTACCATCGGTATAGCGCCAGTTGTTACTGGCAAGGACTTTGCAATATTGAATCCGATAGGCAGTAATATATGTGACCGCTGTTTTGACCCGGCCCCTCTGATTTCGCACTGCACGATTCTGAGATCCAAAGGCCTGCACTGACTTTGACTAATCACGAGATCCTTTGCACTCGAATATTGTTGCGTACACCATGAAATCTCTGAAAATTCTTGATAAGTCTTGAGCAACCCAACTTGGGCGTTTTGTGTTGGGAAGGTTACGTCCTGGGGGTTGTATTTCGTGAACGGAATACATACCTAGGTGCGTGAAACGCCAGGGAACTACATTTTCTCAATTCTTGGTGCTCATTTCAGTCGCTTTCCAGGCTGAGGGTAATATAGCTTGTATCGCCATTATCTTCTTGGAATTCCTTGTACTGATCGAATAAAAGAGAAGGCCGGCCTTGTTGAACAGTATATTCAATTTTAGAAAGTTACAGGA_-_ATGGCAGCTGCCAATAGTCAATCGTGTGTTCCTCCGGGGTTTAGGTTTCATCCCACAGACGAAGAACTTCTGCATTACTACTTGAGGAAGAAGGTCTCTTATGAGATGATTGACCTCAATGTTATTCGGGATGTCGATCTGAACAAACTTGAGCCCTGGGATCTCCATGAGACATGCAAAATTGGGTCTGCTCCACAGGATGAATGGTACTTCTTCAGTCATAAAGACAAGAAATACCCAACGGGCACTCGCACTAATAGAGCAACAGCTGCAGGCTTCTGGAAGGCAACTGGCAGGGATAAAATCATATTTATGAACTGTAAGCGAATTGGCATGAGGAAAACACTTGTATTCTACACAGGACGAGCCCCTCATGGCCAAAAAACAGAATGGATTATGCATGAATACCGTCTAGATGACAAGGAAAAACTACAGGTAAATGAGGATGGATGGGTTGTGTGCCGTGTATTCAAGAAAAGGATGCACAACAAAGACGCCAAAGACATTAACACTGAACGTGAACGTTCAAGTCCAAGTGGAAATGATGAAGAAAGAAGTGCTCATGCCCTACCACAGCTCATGGATTTCCCCTCTGGGGAGCAAGTGCTCCATCAATATAATCACCAACATCTTGACCTAGGCAAGCCACCACCTCAAGCAAGATACAGTTTTTCCCATGATTTATTTGCTCAGATGTCAGATTTAAAACCCCTAGATGGGGCCACCTGCAACCCTAGTTCTACAGTTATCAAAAGCTTCATTCCACAAAGCCTGCTACACATGAATAACTCAAGGCGCCCCCAGTCAATCAATATGCTTATGGGGCATCTTCCTGAAGGACCACAGATTAAGCTCACTGCAAACGACTTTAGGGAAGATCAGCGTTCAAATGATTGGACTTTGTTGGACAGTCTTATGGGCTCCCATGTCGATCAAACAGAGCCAAATAAACAAATGAGATATAACGATCATCCCCAGGCTTTGGATGGATCTTCACATGGATTGGCACTTGGGGTTAACCGATATGATAATAATCACTATTCCAGCGCTGGAATCGAATACTGGAACTTCGAAAAATAA___AGCCGGACCATATAAGGTCGTAATGGGGATTATGGCATATGGAACAGCGCCTTCGATTTTAGCCATTCTTGCAAGTTTACACAGTCAACGATATATGTTTACTATTGAATATGTATATAGTATTGTACTGCCAAGTGTTTTTTCTACTAGCGTTATGCAATATTTTTTTGCATCATATAGCTGAGCAGGTTGATGTAACCTTAATAATATCTATGCTGGATACTGTACCCAAATTCTTATATTTAGCTTTCCGTTTTGCAGAAACAAAATAAAGTGCTGTGCTTGTTTAAAGTCGCTTGCTTGATAGGGCGTCGGCTTCTTGATCTTGAGCCAATTGGGTATATAGGGAAGAAGCGTTAATGTGAGTAACAGTACTCTCATTTTAACATATTTATGTGATAAAGGATTTTTTAGTTGTACAGATCTATTTTGGGGAAGAGTTAATGTGAGTGGGTATTTTTTAATC

Fln Alignment:

Contig704___AANSQSCVPPGFRFHPTDEELLHYYLRKKVSYEMIDLNVIRDVDLNKLEPWDLHETCKIGSAPQDEWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKIIFMNCKRIGMRKTLVFYTGRAPHGQKTEWIMHEYRLDDKEKLQVN------EDGWVVCRVFKKRMHNKDAKDINTERERSSPSGNDEERSAHALPQLMDFPSGE--QVLHQYNHQHLDLGKPPPQARYSFSHDLFAQMSDLKPLDGATC-NPSSTVIKSFIPQS------LLHMNNSRRPQS--INMLMGHLPEGPQIKL--TANDFR---EDQRSNDWTLLDSLMGSHVDQTE---PNKQMR-------YNDHPQALDGSSHG-------LALGVNRYDNNHYSSAGIEYWNFEK
B8LLZ9_____________SVNGQSRVPPGFRFHPTEEELLYYYLKKKVSFEKIDLDVIRDVDLNKLEPWDIQERCKIGSTPQHDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIHTNLKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLDDAEYPQANTFNELQEDGWVVCRVFKKRNHHK-----SQESAELSPKYGSKQFSNNKILSDSDCPSDNLTDPLH-YTHQLNMCKQELEMQQYAFPHDQFMQLPQLESPKIPTCNNPPSSGIKRFFPDSRSGFFQLENITSSKRPCSYPMNLDMTEL-EGSTVTTHDHMTDFKPAEEVQNLQDWTVLDRLVASHLNGQEIETPKLGIRSYGAPNSSSDHQALVDAATVSGDQLTLLPQLRINRLNPHDYASCEIDLWNFVK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
287	50		50		1.0
429		40		60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain