SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene695

Length: 2421 nt

UniGene Fasta

>sp_v3.0_unigene695
TCCTCAAGAGGATAGACTTGCAGCTACCCGTAGTTTGCAGTCTCAATTTGAAGCCTATAAGAAGGCTAATCAGATGTTTGCTGACGTGGTATATAAACACTACAAAGAAGGAGATGTGGTTTGGTGTCACGATTATCATCTCATGTTCCTTCCAAAATGTTTGAAGGATTTTGACAGTCATATGAAGGTTGGATGGTTCCTGCATACCCCTTTTCCTTCTTCAGAGATTTATCGGACACTGCCCTCACGAGATGAGTTGCTCAAGGCAGTTCTTGCAGCTGATTTAGTTGGTTTCCATACATATGATTATGCCCGACATTTTGTAAGTGCATGCACACGAATTCTTGGACTGGAGGGGACTCTAGAAGGTGTGGAGTACCAGGGAAAGTTGATTCGAGTTGCAGCGTTCCCCATAGGCATTGACTCGGAGAGGTTTACAAAAGCACTTGAATTGCCTGAAGTCAAGGAGCACATCAGAGTGCTAGAAGAAACATTTTCTGGTCGAAAGGTCATGTTAGGTGTTGAACGGTTAGATATGATTAAAGGCATTCCTCAAAAGCTTTTAGCATTTGAGAAGTTCCTTGAAGAAAATCCAACTTGGCGGGACAAAGTGCTTTTGGTTCAGATAGCTGTACCCACAAGGACAGATGTTCATGATTATCAAAAGCTTACAAGCCAAGTTCATGAGATCGTGGGGCGCATAAATGGACGTTTTGGGAATCTGATCTCTGTTCCAATACATCATTTGGATCGATCACTTGATTTTCATGAACTTTGTGCACTTTATGCTATTACAGATGTGGCACTTGTAACATCTTTGCGTGATGGGATGAATCTTGTTAGTTATGAAGTTATAGCTTGTCAGAATTCTAAGAAAGGAGTGTTGATCCTTAGTGAGTTTGCTGGGGCTGCACAGTCTCTTGGAGCTGGAGCCATACTTGTAAACCCTTGGAATATTTCTGAGGTTGCAGTTGCCATTGACATTGCCATGAATATGCCAGTAGAAGAGAGAGAGGAAAGGCACAGGCACAACTTTGAGCATGTTACCACTCACACTGCCCAGGTCTGGGCTGAAACATTTGTTAGCGAATTGAATGATACAATCCTGGAAGCTCAGCTAAGGACTCGTCATATACCTCCTCAACTTCCAGTTGACAAGGCTGTTGAAAAGTATGAACAATCAAATAATCGACTGCTTATATTGGGTTTTAATGCAACAATGACTGCACAAGTTGATACACCTGGTAGAAGAGGTCATGATCAAATCAAAGAGATGAAGCTCCGTTTGCATCCTGATCTGGGTGAAACCCTTTCAGTTTTATGTAAGGATCCAAAAACTACTATAGTTGTGCTTAGCGGAAGTGAAAGAAATGTCTTAGATGAGAATTTTGGCGAACTCGACATGTGGTTAGCAGCAGAAAATGGTATGTTTCTGCGCCATACGAAAGGAGAATGGATGATCACAATGCCAGAATATCTTAATATGGACTGGATGGAGAGTGTAAAGCTTGTTTTTGATTATTTCAAAGAAAGGACACCTCGATCATATGTTGAGGTTCGAGAAACTTCTTTGGTTTGGAACTATAAGTATGCAGATGTTGAATTTGGCCGAGTTCAAGCACGTCATATGTTACAGCATTTATGGACTGGTCCGATATCAAATGCTGCTGTTGATGTTGTTCAAGGTGGCCGGTCTGTTGAGGTCCGTTCAGTTGGTGTTTCTAAGGGGGCTGCAATTGATCGAATTTTGGGAGCAATCGTACATGGAAGAAACCTGACAACACCAATCGATTATGTCCTATGCATTGGTCACTTTTTAAGCAAGGATAAAGATATATACAATTTCTTTGAGCCAGAACTCCCTTTTGATAAAGAGGGAAATGGGGTGATTGAAGGAGAAAGGAAGCAGCCATCCAAAAAGGGCGGTAATACCAAATCAAAAGATACAAGTGAAACTGAGAATGACAGAGGGAATGCGGGTTGTCAGGATGGATCATCTGTTCTCGACCTAAAGGGCGATGACTACTTTTCTTGTGCTGTTGGTCGGAAGCGATCTAATGCACGTTATTCTCTTGCATCCTCAGAGGAGGTCATTGCTTTTTTAAATGCTCTTGCAAAAAGAAGTAAGTCACATGTTGATAAAGCTCAAACAAAAGGTTGAAATGATCATTATTAATTTGTCCATATTTAAATGGATCTCGTAATAGAAATATCTTGTGATGGTGTGCACAATGCTATACAAGAAGTTTTAGAGGTTAATATTCCTTTTGGGTTATCCCTTTCCTTTATTGGAAAGAATCACCTTAATTATTGAATTGTAAAATTAATTCATTAAAACAAATCATTTTTTCATGTGTGAGAAATGTATACATTATTTTTAGGCTTCACTTAATTTTAATAAGAGAAGATTGAACAATCAAC

Ace file of the UniGene sp_v3.0_unigene695

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Trehalose-6-phosphate synthase, putative n=1 Tax=Ricinus communis RepID=B9SZ18_RICCO	-	-	0.0	71%
FL-Next	sp=Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	71%
Sma3	Trehalose-6-phosphate synthase, putative	-	-	1.214e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Alpha,alpha-trehalose-phosphate synthase (UDP-forming).	EC:2.4.1.15	-	6.862e-34	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		6.862e-34	%
Sma3	Trehalose-phosphatase.	EC:3.1.3.12	-	1.344e-06	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		1.344e-06	%

Source	Gene names
Sma3	At1g16980; At1g17000; At1g78580; At4g27550; CHLREDRAFT_205538; F20D23.30; F6I1.1; GSVIVT00007211001; GSVIVT00007213001; GSVIVT00027920001; MBP_81C12.6; MICPUCDRAFT_70807; MICPUN_54984; OSTLU_991; Os05g0518600; Os09g0376800; OsI_20647; OsI_31155; OsJ_19222

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	GO:0003825	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	sucrose metabolic process	GO:0005985	Biological Process	-
Sma3	trehalose biosynthetic process	GO:0005992	Biological Process	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	plant-type cell wall biogenesis	GO:0009832	Biological Process	-
Sma3	sugar mediated signaling pathway	GO:0010182	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Sucrose synthase	IPR000368	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Glycosyl transferase, family 20	IPR001830	-	-
Sma3	Trehalose-phosphatase	IPR003337	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	HAD-superfamily hydrolase, subfamily IIB	IPR006379	-	-
Sma3	Alpha,alpha-trehalose-phosphate synthase	IPR012766	-	-
Sma3		IPR015706	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G78580.1	ATTPS1, TPS1 trehalose-6-phosphate synthase chr1:29552495-29557482 REVERSE LENGTH=942	71%
RefSeq	Arabidopsis thaliana	NP_177979.1	alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002331300.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9SYM4

Fln msg: your sequence is shorter than subject: 720 - 942

Fln protein: PQEDRLAATRSLQSQFEAYKKANQMFADVVYKHYKEGDVVWCHDYHLMFLPKCLKDFDSHMKVGWFLHTPFPSSEIYRTLPSRDELLKAVLAADLVGFHTYDYARHFVSACTRILGLEGTLEGVEYQGKLIRVAAFPIGIDSERFTKALELPEVKEHIRVLEETFSGRKVMLGVERLDMIKGIPQKLLAFEKFLEENPTWRDKVLLVQIAVPTRTDVHDYQKLTSQVHEIVGRINGRFGNLISVPIHHLDRSLDFHELCALYAITDVALVTSLRDGMNLVSYEVIACQNSKKGVLILSEFAGAAQSLGAGAILVNPWNISEVAVAIDIAMNMPVEEREERHRHNFEHVTTHTAQVWAETFVSELNDTILEAQLRTRHIPPQLPVDKAVEKYEQSNNRLLILGFNATMTAQVDTPGRRGHDQIKEMKLRLHPDLGETLSVLCKDPKTTIVVLSGSERNVLDENFGELDMWLAAENGMFLRHTKGEWMITMPEYLNMDWMESVKLVFDYFKERTPRSYVEVRETSLVWNYKYADVEFGRVQARHMLQHLWTGPISNAAVDVVQGGRSVEVRSVGVSKGAAIDRILGAIVHGRNLTTPIDYVLCIGHFLSKDKDIYNFFEPELPFDKEGNGVIEGERKQPSKKGGNTKSKDTSETENDRGNAGCQDGSSVLDLKGDDYFSCAVGRKRSNARYSLASSEEVIAFLNALAKRSKSHVDKAQTKG*

Protein Length: 721

Fln nts: TCCTCAAGAGGATAGACTTGCAGCTACCCGTAGTTTGCAGTCTCAATTTGAAGCCTATAAGAAGGCTAATCAGATGTTTGCTGACGTGGTATATAAACACTACAAAGAAGGAGATGTGGTTTGGTGTCACGATTATCATCTCATGTTCCTTCCAAAATGTTTGAAGGATTTTGACAGTCATATGAAGGTTGGATGGTTCCTGCATACCCCTTTTCCTTCTTCAGAGATTTATCGGACACTGCCCTCACGAGATGAGTTGCTCAAGGCAGTTCTTGCAGCTGATTTAGTTGGTTTCCATACATATGATTATGCCCGACATTTTGTAAGTGCATGCACACGAATTCTTGGACTGGAGGGGACTCTAGAAGGTGTGGAGTACCAGGGAAAGTTGATTCGAGTTGCAGCGTTCCCCATAGGCATTGACTCGGAGAGGTTTACAAAAGCACTTGAATTGCCTGAAGTCAAGGAGCACATCAGAGTGCTAGAAGAAACATTTTCTGGTCGAAAGGTCATGTTAGGTGTTGAACGGTTAGATATGATTAAAGGCATTCCTCAAAAGCTTTTAGCATTTGAGAAGTTCCTTGAAGAAAATCCAACTTGGCGGGACAAAGTGCTTTTGGTTCAGATAGCTGTACCCACAAGGACAGATGTTCATGATTATCAAAAGCTTACAAGCCAAGTTCATGAGATCGTGGGGCGCATAAATGGACGTTTTGGGAATCTGATCTCTGTTCCAATACATCATTTGGATCGATCACTTGATTTTCATGAACTTTGTGCACTTTATGCTATTACAGATGTGGCACTTGTAACATCTTTGCGTGATGGGATGAATCTTGTTAGTTATGAAGTTATAGCTTGTCAGAATTCTAAGAAAGGAGTGTTGATCCTTAGTGAGTTTGCTGGGGCTGCACAGTCTCTTGGAGCTGGAGCCATACTTGTAAACCCTTGGAATATTTCTGAGGTTGCAGTTGCCATTGACATTGCCATGAATATGCCAGTAGAAGAGAGAGAGGAAAGGCACAGGCACAACTTTGAGCATGTTACCACTCACACTGCCCAGGTCTGGGCTGAAACATTTGTTAGCGAATTGAATGATACAATCCTGGAAGCTCAGCTAAGGACTCGTCATATACCTCCTCAACTTCCAGTTGACAAGGCTGTTGAAAAGTATGAACAATCAAATAATCGACTGCTTATATTGGGTTTTAATGCAACAATGACTGCACAAGTTGATACACCTGGTAGAAGAGGTCATGATCAAATCAAAGAGATGAAGCTCCGTTTGCATCCTGATCTGGGTGAAACCCTTTCAGTTTTATGTAAGGATCCAAAAACTACTATAGTTGTGCTTAGCGGAAGTGAAAGAAATGTCTTAGATGAGAATTTTGGCGAACTCGACATGTGGTTAGCAGCAGAAAATGGTATGTTTCTGCGCCATACGAAAGGAGAATGGATGATCACAATGCCAGAATATCTTAATATGGACTGGATGGAGAGTGTAAAGCTTGTTTTTGATTATTTCAAAGAAAGGACACCTCGATCATATGTTGAGGTTCGAGAAACTTCTTTGGTTTGGAACTATAAGTATGCAGATGTTGAATTTGGCCGAGTTCAAGCACGTCATATGTTACAGCATTTATGGACTGGTCCGATATCAAATGCTGCTGTTGATGTTGTTCAAGGTGGCCGGTCTGTTGAGGTCCGTTCAGTTGGTGTTTCTAAGGGGGCTGCAATTGATCGAATTTTGGGAGCAATCGTACATGGAAGAAACCTGACAACACCAATCGATTATGTCCTATGCATTGGTCACTTTTTAAGCAAGGATAAAGATATATACAATTTCTTTGAGCCAGAACTCCCTTTTGATAAAGAGGGAAATGGGGTGATTGAAGGAGAAAGGAAGCAGCCATCCAAAAAGGGCGGTAATACCAAATCAAAAGATACAAGTGAAACTGAGAATGACAGAGGGAATGCGGGTTGTCAGGATGGATCATCTGTTCTCGACCTAAAGGGCGATGACTACTTTTCTTGTGCTGTTGGTCGGAAGCGATCTAATGCACGTTATTCTCTTGCATCCTCAGAGGAGGTCATTGCTTTTTTAAATGCTCTTGCAAAAAGAAGTAAGTCACATGTTGATAAAGCTCAAACAAAAGGTTGA___AATGATCATTATTAATTTGTCCATATTTAAATGGATCTCGTAATAGAAATATCTTGTGATGGTGTGCACAATGCTATACAAGAAGTTTTAGAGGTTAATATTCCTTTTGGGTTATCCCTTTCCTTTATTGGAAAGAATCACCTTAATTATTGAATTGTAAAATTAATTCATTAAAACAAATCATTTTTTCATGTGTGAGAAATGTATACATTATTTTTAGGCTTCACTTAATTTTAATAAGAGAAGATTGAACAATCAAC

Fln Alignment:

Contig695___PQEDRLAATRSLQSQFEAYKKANQMFADVVYKHYKEGDVVWCHDYHLMFLPKCLKDFDSHMKVGWFLHTPFPSSEIYRTLPSRDELLKAVLAADLVGFHTYDYARHFVSACTRILGLEGTLEGVEYQGKLIRVAAFPIGIDSERFTKALELPEVKEHIRVLEETFSGRKVMLGVERLDMIKGIPQKLLAFEKFLEENPTWRDKVLLVQIAVPTRTDVHDYQKLTSQVHEIVGRINGRFGNLISVPIHHLDRSLDFHELCALYAITDVALVTSLRDGMNLVSYEVIACQNSKKGVLILSEFAGAAQSLGAGAILVNPWNISEVAVAIDIAMNMPVXXXXXXXXXXXXXVTTHTAQVWAETFVSELNDTILEAQLRTRHIPPQLPVDKAVEKYEQSNNRLLILGFNATMTAQVDTPGRRGHDQIKEMKLRLHPDLGETLSVLCKDPKTTIVVLSGSERNVLDENFGELDMWLAAENGMFLRHTKGEWMITMPEYLNMDWMESVKLVFDYFKERTPRSYVEVRETSLVWNYKYADVEFGRVQARHMLQHLWTGPISNAAVDXXXXXXXXXXXXXXXXKGAAIDRILGAIVHGRNLTTPIDYVLCIGHFLSKDKDIYNFFEPELPFD-----------KEGNGVIEGERKQPSKKGGNTK---SKDTSETENDRGNAGCQ--------DGS-----------------SVLDLKGDDYFSCAVGRKRSNARYSLASSEEVIAFLNALAKRSKS
Q9SYM4_____________PQEDRLATTRSFQSQFAAYKKANQMFADVVNEHYEEGDVVWCHDYHLMFLPKCLKEYNSKMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALEVPEVIQHMKELKERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENANWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQEAKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAASIGQALNMTAEEREKRHRHNFHHVKTHTAQEWAETFVSELNDTVIEAQLRISKVPPELPQHDAIQRYSKSNNRLLILGFNATLTEPVDNQGRRG-DQIKEMDLNLHPELKGPLKALCSDPSTTIVVLSGSSRSVLDKNFGEYDMWLAAENGMFLRLTNGEWMTTMPEHLNMEWVDSVKHVFKYFTERTPRSHFETRDTSLIWNYKYADIEFGRLQARDLLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPSDMPAIARSRPSSDSGAKSSSGDRRPPSKSTHNNNKSGSKSSSSSNSNNNNKSSQRSLQSERKSGSNHSLGNSRRPSPEKISWNVLDLKGENYFSCAVGRTRTNARYLLGSPDDVVCFLEKLADTTSS

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
2207	50	50			1.0
2209	90		10		0.90298
2244			87	12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain