SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene690

Length: 2701 nt

UniGene Fasta

>sp_v3.0_unigene690
CACTGCTAAGCAGTGGTATCAACGCAGAGTACGCGGGGAAGTTAGCAATTATCCCGCTGTCAATCCGAGGACTCGCAGTTTTTTGTGGGTGGAGTACTCACAGTCTCGCAGTTTTTTGTGGGTCGAGTACTCGCAGTTTCGCAGTTTTTTGTGGGTGGTTGGTTAGGGTTTTACCTGCAAATAAGAATGCGGAGCAGTGGTTCATCTTATCAGAAAAATGAGGAAGGCTGGGAAATGGCCGCCTCTCGCAAGGGCAAGAGCCAGGCTCCTACAGATGCTGTAGCAAATGGGGCATGGGGAGGCAATTACAAAAATGGGGCATGGGGAGGCAATTACAATTATTCCTCTGAGAGGCCTGGAAATGGAGCTTGGAAGGGTAAAGCATCTTATATTGCGGATGGCCAGAAGCCTGGCCGCTGGGCGAACAACCCTCGTAGCGATAGAGACCGGGGTTTTAATCAACAGGGATGGAAGGAGTTGGGGAAACCTCATCAGAGGAATGTAAATCAAGAAAATAGGACCGCCAGAGCTAGAAATGCTAGCGGGTGGGGCCATTATGGCAGGGCAAATCAAGCAACACAGAGCAGCTGGAAGCCCGAAAACTCAGAGTCTGCCTATGGAAAGAAGGGCAAGGCAGATCTTTCTGTTCCTCCCCCACTTGCTAACGGTTGGCAATGGCGCAGCGACGCCAAGTTGGATTCTTCAATGGCATCATTACCCCGTGGAAAAGGTTCCGGACACAGGAGTGCAGATGCTAGTGAAGAGAAATATGAATTGGGGAGTAAGATGCTTTCTAAACTTCTTCCTTTTGAGCAATCAGGGGAGCCATCTCATGAAACAACTGGAGCTGGAGACCGATCCAGTGATAACGATACAGATATTGATAATCTTGACAGCGACGAGGATTTAGTAAGCAGCGATGACTATGATTCTGAAGGGAGTAATGTAAGTCATGATACTCGCAAGAAGAATAAGTGGTTCAAAAGTTTTTTTGAATCCCTGGATAACCTGACCCTGGAGGAGGTGAATGATCCTGAGAGGCAGTGGCACTGCCCTGCATGCAGAGGCGGCGTTGGGGCCATCGATTGGTACAGTGGTATGCAACCCATTTTAGCCCATGCCAAAACTATCAGATCAAAGAGGGTAAAGGTGCACCGCGAACTTGCGGAAGTACTGGAAGAAGAATTGAAAAGGCGAGGAGCTGCATGCTTAAATGCCGAGGAGATGTTTGGTAAGTGGAAGGGCCTGCGAGAGACTGTAAACGATCAAGAAATTGTCTGGCCTCCTATGATTATTATTCAGAACACGCTCCTTGATCAAGATGAAAATGAACAGTGGATTGGAATGGGAAATAAAGAATTACTGGAGTATTTCAAAGGATATAAAGCCATGAAGGCAAGACATGCATATGGCCCAAAGGGACATCGTGGAATGAGTCTTCTTATATTTGAGGAATCAGCAATGGGATACTTGGAGGCAGAGCGGTTACAGAAACAGTTTTTAAAGGAAGCGAGAGGAAAAGATGACTGGGAGCGACGTCGGGTATTGTTTTATCCAGGTGGAAAACGTGTACTATATGGTTACTTCGCAACAAAAGAAGAGATGGAGATTTTCAACAGACATTCAAAAGGCAAAGCAAGGTTGAAGTATGAGATGAGATCATATCATAAAATGGTTGTGGAACCCATGAAGCAAATGGATGAGGACAATCAGAAGTTGTCTTGGTTTAAGACTAAAGTTGCTAAACAACAGGAGCACAGTAAAAATTTAGAAGAGACAGTTAGTATAGTCTCATCAAAATTGCGTATGAAAGATCAAGAAATTAAGATTATTAGACAGAGGGCTACAGAGCAGCACGAGGAATGCAAGAAAGAGATGGATTATTTGGAGCAAAGTTATAGAGAACAAATTGATCAGCTGAATGCGGATATTACAAAAAGAGAATCAGAGATGGAAGAGATGGAAGAGGAGTTCAAGAAAGCACACTTAGATCGTTGTCACCAACTTGAAGTTAACTCTGCAAAGCTCCCAAAAGGTGCACAAGTTGTGAATGACGAACAACAGGAACAACAGAGCAAAATTGCTGAAGAGATTGCAAGAAGAAAAATGATAGTTGAAGGCAGCTTCAAAGATTCTGAAGAATATGAACGTGAGAGGCAAGAACTTATTAAAATGCATGACAACAAGAGGAGGGAGATCAAGCTAAAACAGTTACAGGAAGAAGTAGCCTTAGAGAAGGAATTGGAGCGTGAGAGAGTTGAACTACTGGACAAGCATCTAAAGAGAAGGCAAGAAGTACAGAATGTTGCTGTTTAATTGTAGGGGTCGGAGAATTTCTATGCAATTAAATAAGCATACTTTATATTATAACCGTTTTTGAATTTTATGCACCCCTTGAAAAGCTACACATGAAGAGCAAGGAAACTTCTGTAGCCATCCTGTTGTTTGTATGTTGAAAAGCTACCCATGAAGAGCAAGGAAACTTCTGTAGCCATCCTGCTGTTTGTATGTTGTGATCACTAGAAATTGGAGAACTGAATCATACGGATTGTAGAATCTATTTTGCCTTTTGATGAGAATGTTGAATCATTTTCCCTGGATACAAATATCCCTTTTAAATACACACCAAAAAAAGGAAAAAAGAGGAGATTTATAAAGAGTTTTTGTTTCATTATCCTATATGATCCTTCTGTAAATGTGT

Ace file of the UniGene sp_v3.0_unigene690

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein SUPPRESSOR OF GENE SILENCING 3 n=1 Tax=Solanum lycopersicum RepID=SGS3_SOLLC	-	-	0.0	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	Protein SUPPRESSOR OF GENE SILENCING 3 homolog	-	-	4.169e-09	-

Source	Gene names
Sma3	GSVIVT00003647001; LBL1; LOC_Os12g09590; MtrDRAFT_AC157375g28v1; Os12g0197700; OsI_036510; OsI_37773; OsJ_35526; POPTRDRAFT_553448; POPTRDRAFT_779908; POPTRDRAFT_791055; POPTRDRAFT_836008; RCOM_1176800; RCOM_1411630; RCOM_1443460; SGS3; VITISV_043511;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	gene silencing by RNA	GO:0031047	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Zinc finger-XS domain	IPR005381	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G23570.1	SGS3, ATSGS3 XS domain-containing protein / XS zinc finger domain-containing protein-related chr5:7943621-7945874 FORWARD LENGTH=625	0.0	47%
RefSeq	Arabidopsis thaliana	NP_197747.1	protein SUPPRESSOR OF GENE SILENCING 3 [Arabidopsis thaliana]	0.0	47%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNA2

Fln msg: your sequence is longer than subject: 710 - 419

Fln protein: MRSSGSSYQKNEEGWEMAASRKGKSQAPTDAVANGAWGGNYKNGAWGGNYNYSSERPGNGAWKGKASYIADGQKPGRWANNPRSDRDRGFNQQGWKELGKPHQRNVNQENRTARARNASGWGHYGRANQATQSSWKPENSESAYGKKGKADLSVPPPLANGWQWRSDAKLDSSMASLPRGKGSGHRSADASEEKYELGSKMLSKLLPFEQSGEPSHETTGAGDRSSDNDTDIDNLDSDEDLVSSDDYDSEGSNVSHDTRKKNKWFKSFFESLDNLTLEEVNDPERQWHCPACRGGVGAIDWYSGMQPILAHAKTIRSKRVKVHRELAEVLEEELKRRGAACLNAEEMFGKWKGLRETVNDQEIVWPPMIIIQNTLLDQDENEQWIGMGNKELLEYFKGYKAMKARHAYGPKGHRGMSLLIFEESAMGYLEAERLQKQFLKEARGKDDWERRRVLFYPGGKRVLYGYFATKEEMEIFNRHSKGKARLKYEMRSYHKMVVEPMKQMDEDNQKLSWFKTKVAKQQEHSKNLEETVSIVSSKLRMKDQEIKIIRQRATEQHEECKKEMDYLEQSYREQIDQLNADITKRESEMEEMEEEFKKAHLDRCHQLEVNSAKLPKGAQVVNDEQQEQQSKIAEEIARRKMIVEGSFKDSEEYERERQELIKMHDNKRREIKLKQLQEEVALEKELERERVELLDKHLKRRQEVQNVAV*

Protein Length: 711

Fln nts: CACTGCTAAGCAGTGGTATCAACGCAGAGTACGCGGGGAAGTTAGCAATTATCCCGCTGTCAATCCGAGGACTCGCAGTTTTTTGTGGGTGGAGTACTCACAGTCTCGCAGTTTTTTGTGGGTCGAGTACTCGCAGTTTCGCAGTTTTTTGTGGGTGGTTGGTTAGGGTTTTACCTGCAAATAAGA_-_ATGCGGAGCAGTGGTTCATCTTATCAGAAAAATGAGGAAGGCTGGGAAATGGCCGCCTCTCGCAAGGGCAAGAGCCAGGCTCCTACAGATGCTGTAGCAAATGGGGCATGGGGAGGCAATTACAAAAATGGGGCATGGGGAGGCAATTACAATTATTCCTCTGAGAGGCCTGGAAATGGAGCTTGGAAGGGTAAAGCATCTTATATTGCGGATGGCCAGAAGCCTGGCCGCTGGGCGAACAACCCTCGTAGCGATAGAGACCGGGGTTTTAATCAACAGGGATGGAAGGAGTTGGGGAAACCTCATCAGAGGAATGTAAATCAAGAAAATAGGACCGCCAGAGCTAGAAATGCTAGCGGGTGGGGCCATTATGGCAGGGCAAATCAAGCAACACAGAGCAGCTGGAAGCCCGAAAACTCAGAGTCTGCCTATGGAAAGAAGGGCAAGGCAGATCTTTCTGTTCCTCCCCCACTTGCTAACGGTTGGCAATGGCGCAGCGACGCCAAGTTGGATTCTTCAATGGCATCATTACCCCGTGGAAAAGGTTCCGGACACAGGAGTGCAGATGCTAGTGAAGAGAAATATGAATTGGGGAGTAAGATGCTTTCTAAACTTCTTCCTTTTGAGCAATCAGGGGAGCCATCTCATGAAACAACTGGAGCTGGAGACCGATCCAGTGATAACGATACAGATATTGATAATCTTGACAGCGACGAGGATTTAGTAAGCAGCGATGACTATGATTCTGAAGGGAGTAATGTAAGTCATGATACTCGCAAGAAGAATAAGTGGTTCAAAAGTTTTTTTGAATCCCTGGATAACCTGACCCTGGAGGAGGTGAATGATCCTGAGAGGCAGTGGCACTGCCCTGCATGCAGAGGCGGCGTTGGGGCCATCGATTGGTACAGTGGTATGCAACCCATTTTAGCCCATGCCAAAACTATCAGATCAAAGAGGGTAAAGGTGCACCGCGAACTTGCGGAAGTACTGGAAGAAGAATTGAAAAGGCGAGGAGCTGCATGCTTAAATGCCGAGGAGATGTTTGGTAAGTGGAAGGGCCTGCGAGAGACTGTAAACGATCAAGAAATTGTCTGGCCTCCTATGATTATTATTCAGAACACGCTCCTTGATCAAGATGAAAATGAACAGTGGATTGGAATGGGAAATAAAGAATTACTGGAGTATTTCAAAGGATATAAAGCCATGAAGGCAAGACATGCATATGGCCCAAAGGGACATCGTGGAATGAGTCTTCTTATATTTGAGGAATCAGCAATGGGATACTTGGAGGCAGAGCGGTTACAGAAACAGTTTTTAAAGGAAGCGAGAGGAAAAGATGACTGGGAGCGACGTCGGGTATTGTTTTATCCAGGTGGAAAACGTGTACTATATGGTTACTTCGCAACAAAAGAAGAGATGGAGATTTTCAACAGACATTCAAAAGGCAAAGCAAGGTTGAAGTATGAGATGAGATCATATCATAAAATGGTTGTGGAACCCATGAAGCAAATGGATGAGGACAATCAGAAGTTGTCTTGGTTTAAGACTAAAGTTGCTAAACAACAGGAGCACAGTAAAAATTTAGAAGAGACAGTTAGTATAGTCTCATCAAAATTGCGTATGAAAGATCAAGAAATTAAGATTATTAGACAGAGGGCTACAGAGCAGCACGAGGAATGCAAGAAAGAGATGGATTATTTGGAGCAAAGTTATAGAGAACAAATTGATCAGCTGAATGCGGATATTACAAAAAGAGAATCAGAGATGGAAGAGATGGAAGAGGAGTTCAAGAAAGCACACTTAGATCGTTGTCACCAACTTGAAGTTAACTCTGCAAAGCTCCCAAAAGGTGCACAAGTTGTGAATGACGAACAACAGGAACAACAGAGCAAAATTGCTGAAGAGATTGCAAGAAGAAAAATGATAGTTGAAGGCAGCTTCAAAGATTCTGAAGAATATGAACGTGAGAGGCAAGAACTTATTAAAATGCATGACAACAAGAGGAGGGAGATCAAGCTAAAACAGTTACAGGAAGAAGTAGCCTTAGAGAAGGAATTGGAGCGTGAGAGAGTTGAACTACTGGACAAGCATCTAAAGAGAAGGCAAGAAGTACAGAATGTTGCTGTTTAA___TTGTAGGGGTCGGAGAATTTCTATGCAATTAAATAAGCATACTTTATATTATAACCGTTTTTGAATTTTATGCACCCCTTGAAAAGCTACACATGAAGAGCAAGGAAACTTCTGTAGCCATCCTGTTGTTTGTATGTTGAAAAGCTACCCATGAAGAGCAAGGAAACTTCTGTAGCCATCCTGCTGTTTGTATGTTGTGATCACTAGAAATTGGAGAACTGAATCATACGGATTGTAGAATCTATTTTGCCTTTTGATGAGAATGTTGAATCATTTTCCCTGGATACAAATATCCCTTTTAAATACACACCAAAAAAAGGAAAAAAGAGGAGATTTATAAAGAGTTTTTGTTTCATTATCCTATATGATCCTTCTGTAAATGTGT

Fln Alignment:

Contig690___SNVSHDTRKKNKWFKSFFESLDNLTLEEVNDPERQWHCPACRGGVGAIDWYSGMQPILAHAKTIRSKRVKVHRELAEVLEEELKRRGAACLNAEEMFGKWKGLRETVNDQEIVWPPMIIIQNTLLDQDENEQWIGMGNKELLEYFKGYKAMKARHAYGPKGHRGMSLLIFEESAMGYLEAERLQKQFLKEARGKDDWERRRVLFYP-GGKRVLYGYFATKEEMEIFNRHSKGKARLKYEMRSYHKMVVEPMKQMDEDNQKLSWFKTKVAKQQEHSKNLEETVSIVSSKLRMKDQEIKIIRQRATEQHEECKKEMDYLEQSYREQIDQLNADITKR
B8LNA2_____________NSLGHEAMKKHKVFKKLFESMDALTFKEVNN--REWTCPACRAG--AAETHKGLKPLIDHAKNARQWNVRLHRKLVKVLEEELKRRSAAGFAVQEVYGKWLSLQEGHIDSQIVWPPIVIVENTGFKLQDNQQSSGMGNKELLEAFKAYKPTKAKQAYGPKGHRGRSLLIFEESAVGYLEADRLQKDFLKEGRGRADWDRRGTLIHPTGAKRVLYGYMANKEDMENFNKHS-GSGKSKYDMLSYKAMVIEPVKKMKENSQKLDWLDAKMLEDKAITKSLEETVDTMAARLEIQKSEVKIIIGKVAEKCDEWKKGLDHLERIYKEQIDELMGDVEKR

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
1165			87	12	0.992554
1375	20	80			0.995493
1512		83	16		0.994512
1745		20		80	0.995493
1751	80		20		0.995493
1757	20		80		0.995493
1765	80		20		0.995493
1768	80	20			0.995493
1793		80	20		0.995493
1794			20	80	0.995493
1818		80	20		0.995493
1819	80	20			0.995493
1846	20	80			0.995493
1856	20		80		0.995493
1867		20	80		0.995493
1868		80		20	0.995493
1905		20	80		0.995493
2077			40	60	1.0
2123		50	50		1.0
2396		83	16		0.994512
2468		50		50	1.0
2560	37	62			1.0
2561		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain