SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene685

Length: 2442 nt

UniGene Fasta

>sp_v3.0_unigene685
TGAAGTGATGAAGGAGTGCCCTCAGGTATAGGAGGAATGCAATGCCTTTAGCATCCCAGCTTTGATGATCCTAATTTGGCTCTGGGAGGAAATATCATCCATTTCTGTTCCTCACACCCTCTCTGGGTTTCAGTAGAATTCATATATTTTTGGGTGTTTCTTTGGGAAATATAGTTCCCCCTGTAGGAGTTGGGTTGCATTTGAAACCAGAAGAGTTTTAAATTAGTTTCTCAAGGGTGTTATAATGCCTCAGGCAAAGAGAGAGGAGGGTATAGAGTCAGTCCAAGAGAGTATAATCATTGCTACCACAGAACGTAACAGGAAAGCTCTGGATTTCATCGAGCATGCTACTATTAATGCCGCTGAAGTGCAAGCTGAAGTTCTGTTGGAAATTTTAACTAGAAATGCTTATACAGAATATCTTGAACGCTATCAGCTCACTGGTCGGACTGATAGAAAGTCATTCAAGGAACGCTTGCCTGTGATTACTTACGAAGATCTGCAGCCTGAGATTCTTCGCATAGCCAACGGCGATATGTCTCCCATTCTTTCTGCTCACCCCATCTCTGAATTTCTCACAAGCTCTGGAACATCAGCTGGAGAAAGAAAGATTATGCCCACTATTCACGAAGAATTGAAGCGGAGAACGCTGCTTTACAGCCTTCTAATGCCTGTCATGAACCAATACATGAAAGGGTTGGACAAGGGAAAGGGCATGTACTTCCTCTTCGTCAAATCTGAGACCAGGACTCCCGGTGGCTTGCTCGCCCGCCCTGTCCTCACCAGCTACTACAAGAGTCAGGACTTCATAGAACGGCCTTACGACCCCTACAATGTGTACACCAGCCCCATGGAGGCGATACTGTGTTCAGACTCATATCAAAGCATGTACTGCCAGCTTCTGTGCGGTCTTGCACAGAACCACGAGGTGCTCAGAGTGGGAGCTGTGTTCGCGTCCGGGCTTCTGAGAGCAATACGTTTCCTGGAAGAACACTGGCAGTCGTTGTGCCAAGATATTCGCAGTGGCACAGTAAACGATGAAGAGGTGACGGATCCTTGCCTCAGAGAGAGCGTGATGAAGATACTCCACCCGAATACTCAACTGGCGGACTTGATCCGCACTGAGTGCTCCAAAGAATCATGGCAAGGAATCATCACGCGCCTCTGGCCCAACGCTAGATACTTGGACGTTATTGTTACAGGTGCCATGGCCCAATACATCAAGACTCTGGATTTTTACAGCGGCGGCCTTCCTCAGGTTTGCACCATGTATGCCTCCTCGGAGTGCTATTTCGGCATAAATCTGAAGCCTCTGTGCCAGCCATGGGAGGTTTCCTACACGCTGATGCCGAACATGGCCTTTTTCGAGTTCCTTCCTGTCTACCGTAACAAGAACGAGGATGCAGGACCCGTTACCACGGCTACTGAACAACCGGCAGAGCTAGTCGATCTCGTTGATGTGAAAGTGGGACAAGAATATGAGCTTGTGATTACCACATATTCAGGACTGTACCGTTACAGAGTCGGAGACGTGCTGCGGGTGACGGGGTTCCACAACGCTGCGCCGCAGTTCCAGTTCGTATGCAGGAAGAATGTAATGCTAAGCATCGACGCCGACAAAACAGACGAAGCAGAGCTGCACAACGCGGTTATGAATGCAGTGAAGCACCTGGAGCCTTTGGAGGCTACCCTTGTGGAATACACTAGCTACACCGACACGTCCACCATTCCGGGTCATTACGTTCTTTACTGGGAGCTTCGAACCTCCGCGCTGCCCGTGCCTCCCTCCGTTTTCGAAGATTGCTGCCTGACTGTAGAAGAATCTCTCAACTCCGTCTACAGGCAGTGCAGAGTAGCGGACAAATCCATCGGCCCCTTGGAGATTAAAGTAGTCGAGATGGGCACATTCGACAAGTTGATGGACTACGCCATCAGCCGAGGTTCGTCCATCAATCAATACAAAGCGGCACGATGCGTCAAGTTCGCTCCCATGGTGGATATCCTGAATTCCAGAGTCTCGGCAAGCTATTTCAGCCCCAGGTGTCCCAAATGGACAGCCGGACGAACCCAGTGGGGCGCGTTGCCTCGGTAAAATTTGGCGGAACCTAGCTAAATTGTCGGGCAAAATCTCTATATGTCTCTTTTAATTGCGACGTAGCTTCTTTTAGTTTGCCTCTTTGCAAGTACTTCACAAATCACTGTAACAAGCCCGTGGTCAGCCCTGTTGTTGTCCGCGGGATTTTCTTTCATACAACTTGTTGGGTTAATTAGCTGAGGATTGACAGCTTTGTACATTACATATGTGTTGGAATTTCAAATCTAAACAGTCTACCAAAATCGACGGTTTCGACAACCTGGGTACTCATTTTGACAGTTTGAATGAAGAATGTTAACTGTTAAGAAAATTTGCAACCGTATTTGCCCGTCAAATTGCATCCGATA

Ace file of the UniGene sp_v3.0_unigene685

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Auxin-induced GH3 protein n=1 Tax=Pinus pinaster RepID=Q4LAM0_PINPS	-	-	99%
FL-Next	tr=Auxin-induced GH3 protein; Pinus pinaster (Maritime pine).	-	-	99%
Sma3	Auxin-induced GH3 protein	-	-	-

Source	Gene names
Sma3	GH3.16;

Source	InterPros	Term	Type	e value	Identity
Sma3	GH3 auxin-responsive promoter	IPR004993	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G54510.1	GH3.6, DFL1 Auxin-responsive GH3 family protein chr5:22131321-22133564 REVERSE LENGTH=612	68%
RefSeq	Arabidopsis thaliana	NP_200262.1	indole-3-acetic acid-amido synthetase GH3.6 [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002316954.1	GH3 family protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q4LAM0

Fln msg:

Fln protein: MPQAKREEGIESVQESIIIATTERNRKALDFIEHATINAAEVQAEVLLEILTRNAYTEYLERYQLTGRTDRKSFKERLPVITYEDLQPEILRIANGDMSPILSAHPISEFLTSSGTSAGERKIMPTIHEELKRRTLLYSLLMPVMNQYMKGLDKGKGMYFLFVKSETRTPGGLLARPVLTSYYKSQDFIERPYDPYNVYTSPMEAILCSDSYQSMYCQLLCGLAQNHEVLRVGAVFASGLLRAIRFLEEHWQSLCQDIRSGTVNDEEVTDPCLRESVMKILHPNTQLADLIRTECSKESWQGIITRLWPNARYLDVIVTGAMAQYIKTLDFYSGGLPQVCTMYASSECYFGINLKPLCQPWEVSYTLMPNMAFFEFLPVYRNKNEDAGPVTTATEQPAELVDLVDVKVGQEYELVITTYSGLYRYRVGDVLRVTGFHNAAPQFQFVCRKNVMLSIDADKTDEAELHNAVMNAVKHLEPLEATLVEYTSYTDTSTIPGHYVLYWELRTSALPVPPSVFEDCCLTVEESLNSVYRQCRVADKSIGPLEIKVVEMGTFDKLMDYAISRGSSINQYKAARCVKFAPMVDILNSRVSASYFSPRCPKWTAGRTQWGALPR*

Protein Length: 617

Fln nts: TGAAGTGATGAAGGAGTGCCCTCAGGTATAGGAGGAATGCAATGCCTTTAGCATCCCAGCTTTGATGATCCTAATTTGGCTCTGGGAGGAAATATCATCCATTTCTGTTCCTCACACCCTCTCTGGGTTTCAGTAGAATTCATATATTTTTGGGTGTTTCTTTGGGAAATATAGTTCCCCCTGTAGGAGTTGGGTTGCATTTGAAACCAGAAGAGTTTTAAATTAGTTTCTCAAGGGTGTTATA_-_ATGCCTCAGGCAAAGAGAGAGGAGGGTATAGAGTCAGTCCAAGAGAGTATAATCATTGCTACCACAGAACGTAACAGGAAAGCTCTGGATTTCATCGAGCATGCTACTATTAATGCCGCTGAAGTGCAAGCTGAAGTTCTGTTGGAAATTTTAACTAGAAATGCTTATACAGAATATCTTGAACGCTATCAGCTCACTGGTCGGACTGATAGAAAGTCATTCAAGGAACGCTTGCCTGTGATTACTTACGAAGATCTGCAGCCTGAGATTCTTCGCATAGCCAACGGCGATATGTCTCCCATTCTTTCTGCTCACCCCATCTCTGAATTTCTCACAAGCTCTGGAACATCAGCTGGAGAAAGAAAGATTATGCCCACTATTCACGAAGAATTGAAGCGGAGAACGCTGCTTTACAGCCTTCTAATGCCTGTCATGAACCAATACATGAAAGGGTTGGACAAGGGAAAGGGCATGTACTTCCTCTTCGTCAAATCTGAGACCAGGACTCCCGGTGGCTTGCTCGCCCGCCCTGTCCTCACCAGCTACTACAAGAGTCAGGACTTCATAGAACGGCCTTACGACCCCTACAATGTGTACACCAGCCCCATGGAGGCGATACTGTGTTCAGACTCATATCAAAGCATGTACTGCCAGCTTCTGTGCGGTCTTGCACAGAACCACGAGGTGCTCAGAGTGGGAGCTGTGTTCGCGTCCGGGCTTCTGAGAGCAATACGTTTCCTGGAAGAACACTGGCAGTCGTTGTGCCAAGATATTCGCAGTGGCACAGTAAACGATGAAGAGGTGACGGATCCTTGCCTCAGAGAGAGCGTGATGAAGATACTCCACCCGAATACTCAACTGGCGGACTTGATCCGCACTGAGTGCTCCAAAGAATCATGGCAAGGAATCATCACGCGCCTCTGGCCCAACGCTAGATACTTGGACGTTATTGTTACAGGTGCCATGGCCCAATACATCAAGACTCTGGATTTTTACAGCGGCGGCCTTCCTCAGGTTTGCACCATGTATGCCTCCTCGGAGTGCTATTTCGGCATAAATCTGAAGCCTCTGTGCCAGCCATGGGAGGTTTCCTACACGCTGATGCCGAACATGGCCTTTTTCGAGTTCCTTCCTGTCTACCGTAACAAGAACGAGGATGCAGGACCCGTTACCACGGCTACTGAACAACCGGCAGAGCTAGTCGATCTCGTTGATGTGAAAGTGGGACAAGAATATGAGCTTGTGATTACCACATATTCAGGACTGTACCGTTACAGAGTCGGAGACGTGCTGCGGGTGACGGGGTTCCACAACGCTGCGCCGCAGTTCCAGTTCGTATGCAGGAAGAATGTAATGCTAAGCATCGACGCCGACAAAACAGACGAAGCAGAGCTGCACAACGCGGTTATGAATGCAGTGAAGCACCTGGAGCCTTTGGAGGCTACCCTTGTGGAATACACTAGCTACACCGACACGTCCACCATTCCGGGTCATTACGTTCTTTACTGGGAGCTTCGAACCTCCGCGCTGCCCGTGCCTCCCTCCGTTTTCGAAGATTGCTGCCTGACTGTAGAAGAATCTCTCAACTCCGTCTACAGGCAGTGCAGAGTAGCGGACAAATCCATCGGCCCCTTGGAGATTAAAGTAGTCGAGATGGGCACATTCGACAAGTTGATGGACTACGCCATCAGCCGAGGTTCGTCCATCAATCAATACAAAGCGGCACGATGCGTCAAGTTCGCTCCCATGGTGGATATCCTGAATTCCAGAGTCTCGGCAAGCTATTTCAGCCCCAGGTGTCCCAAATGGACAGCCGGACGAACCCAGTGGGGCGCGTTGCCTCGGTAA___AATTTGGCGGAACCTAGCTAAATTGTCGGGCAAAATCTCTATATGTCTCTTTTAATTGCGACGTAGCTTCTTTTAGTTTGCCTCTTTGCAAGTACTTCACAAATCACTGTAACAAGCCCGTGGTCAGCCCTGTTGTTGTCCGCGGGATTTTCTTTCATACAACTTGTTGGGTTAATTAGCTGAGGATTGACAGCTTTGTACATTACATATGTGTTGGAATTTCAAATCTAAACAGTCTACCAAAATCGACGGTTTCGACAACCTGGGTACTCATTTTGACAGTTTGAATGAAGAATGTTAACTGTTAAGAAAATTTGCAACCGTATTTGCCCGTCAAATTGCATCCGATA

Fln Alignment:

Contig685___MPQAKREEGIESVQESIIIATTERNRKALDFIEHATINAAEVQAEVLLEILTRNAYTEYLERYQLTGRTDRKSFKERLPVITYEDLQPEILRIANGDMSPILSAHPISEFLTSSGTSAGERKIMPTIHEELKRRTLLYSLLMPVMNQYMKGLDKGKGMYFLFVKSETRTPGGLLARPVLTSYYKSQDFIERPYDPYNVYTSPMEAILCSDSYQSMYCQLLCGLAQNHEVLRVGAVFASGLLRAIRFLEEHWQSLCQDIRSGTVNDEEVTDPCLRESVMKILHPNTQLADLIRTECSKESWQGIITRLWPNARYLDVIVTGAMAQYIKTLDFYSGGLPQVCTMYASSECYFGINLKPLCQPWEVSYTLMPNMAFFEFLPVYRNKNEDAGPVTTATEQPAELVDLVDVKVGQEYELVITTYSGLYRYRVGDVLRVTGFHNAAPQFQFVCRKNVMLSIDADKTDEAELHNAVMNAVKHLEPLEATLVEYTSYTDTSTIPGHYVLYWELRTSALPVPPSVFEDCCLTVEESLNSVYRQCRVADKSIGPLEIKVVEMGTFDKLMDYAISRGSSINQYKAARCVKFAPMVDILNSRVSASYFSPRCPKWTAGRTQWGALPR
Q4LAM0_____________MPQAKREEGIESVQESIIIATTERNRKALDFIEHATIHAAEVQAEVLLEILTRNAYTEYLERYQLTGRTDRKSFKERLPVITYEDLQPEILRIANGDMSPILSAHPISEFLTSSGTSAGERKIMPTIHEELKRRTLLYSLLMPVMNQYMKGLDKGKGMYFLFVKSETRTPGGLLARPVLTSYYKSQDFIERPYDPYNVYTSPMEAILCSDSYQSMYCQLLCGLAQNHEVLRVGAVFASGLLRAIRFLEEHWQSLCQDIRSGTVNDEEVTDPCLRESVMKILHPNTQLADLIRTECSKESWQGIITRLWPNARYLDVIVTGAMAQYIKTLDFYSGGLPQVCTMYASSECYFGINLKPLCQPWEVSYTLMPNMAFFEFLPVYRNKNEDAGPVTTATEQPAELVDLVDVKVGQEYELVITTYSGLYRYRVGDVLRVTGFHNAAPQFQFVCRKNVMLSIDADKTDEAELHNAVMNAVKHLEPLEATLVEYTSYTDTSTIPGHYVLYWELRTSALPVPPSVFEDCCLTVEESLNSVYRQCRVADKSIGPLEIKVVEMGTFDKLMDYAISRGSSINQYKAARCVKFAPMVDILNSRVSASYFSPRCPKWTAGRTQWGALPR

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
799	25			75	0.996473
802			75	25	0.996473
803			75	25	0.996473
1717		80		20	0.995493
1720		80		20	0.995493
1722			20	80	0.995493
1723		80	20		0.995493
1907	85		14		0.993533
1910		85		14	0.993533
1911		14	85		0.993533
1912	85			14	0.993533
1914	85			14	0.993533
1964	88	11			0.923564
1968			88	11	0.923564
1969		88	11		0.923564
1972		11	88		0.923564
1973	88			11	0.923564
1982		11	88		0.923564
1984		11		88	0.923564
1985	11	88			0.923564
1990		88		11	0.923564
2286	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain