SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene683

Length: 2962 nt

UniGene Fasta

>sp_v3.0_unigene683
ATGCAGATAAGAGCCCATTCCAACGTACTTATGCTAATCAGGTTAAACGATGTGCAGAGATGACTCGGAAGTTGCGTTTCTTTAGAGAGCAAATAAATAAATCTGGCTTATGTCCTACTGGGTCCCCTCGTGAACAAGCCACTGATTTTGATGAGCTTGAGGTTCAATTTGGTGAATATGAAGCTGAACTTCAAGAAATAAATGAAAACAGTGAAAAATTGCAGCGTACTTACAATGAACTATTAGAATTTAAGCTTGTGCTGCAAAAGGTTGGGTTCTTACTCTCTACATCTGCCAATGTGGTTGCTCATCAAACAGAGCTAGATGAAACTTCATATGTTGAACCTGAATTCACGGACAGTTCATTGTTATTAGAACAGGAAGCACAGACAGAGCTTTCAAAGCAAGTAAGACTAGGGTTTATCTGTGGACTTGTTCCCAAAGCCAAGGCTATACAATTTGAAAGGATTCTTTTTCGTGCTACAAGGGGGAACATGTTATTCAAGCATGTGACAGTTGAGGAACATGTAAAGGACCCAGTGCTATGTGAAATGGTTGAAAAAGTTGTGTTTGTCGTGTTCTTTTCTGGAGAACGAGCTAGAACAAAAGTAGTGAAGATATGTGAAGCATTTGGAGCTAGTCGGTATCCTTTCCCTGAGGATGCTAGTAAGCAGAGGCGAATTATAGAAGAGGTACTTGAAAGACTTTCTGAACTTAAAACAACAATTGACGCTGGCATCCGTCATCGAAACAACGTTCTTACAACAATTGGATATCAGCTAGAAAAATGGACTGTGCTGGTGAAAAAGGAGAAAGCTATTTATCACACACTAAACATGCTCAATGTTGATGTGACTAAGAAGTGTCTTGTTGGGGAGGGCTGGTGCCCTGTCTATGCAAAAGCTGAGATTCAAGATGTATTGCACCGTGCAGCGTTTGAGAGCAACTCACAAGTTGCAAGCATATTCCATACACTGCATGCCACTGAGTCGCCGCCTACATATTTCAGGACGAACAAGTTCACTGGGGCTTTCCAAGAAATTGTTGATGCATATGGCATGGCAAAGTATCGGGAAGCAAATCCTACAGTATACACAATCATCACGTTTCCATTTTTGTTTGCTGTTATGTTTGGTGATTGGGGTCATGGCCTATGCTTATTGATTGCAACATTGGTGCTCATTTGTAGAGAGAAAAAACTTGGACGTCAGAAACTTGGAGACATTATGGAGATGGCATTTGCAGGGCGTTATGTTCTTTTAATGATGGCATTGTTCTCAATTTACTGTGGACTAATTTACAATGAATTCTTTTCAGTTCCTTTTCATATATTTGGCCCATCTGCCTACAAATGTCGCGATCCTTCCTGCAGTGATGCTTCTAAAGATGGTATGATTAAGTATCGTGAACCATATCCATTTGGCATTGATCCTATGTGGCGTGGTAGCAGAACAGAACTGCCATTCCTAAATTCATTGAAAATGAAGATGTCCATTTTGTTGGGTGTTGCTCAAATGAATTTGGGGATTGTTCTGAGTTATTTCAATGCAAAGTTCTTTTCCAATTCACTTAATATTTGGTATCAATTTGTGCCCCAGATGATTTTTTTAAACAGTCTCTTTGGTTATCTTGCTCTCTTAATTATCATCAAGTGGTGCAGTGGTTCTAAAGCTGATCTATATCATGTAATGATATATATGTTCTTGAGTCCTACTGATGACCTTGGTGAAAATCAACTGTTTTGGGGTCAGAGATTGGTTCAGATTGTGTTGCTACTGTTAGCTTTTGCTGCAGTTCCTTGGATGCTTCTTCCAAAACCTTTAATTTTAAGGAAGCAACATCGTCAGAGACTTCAAGGTCGTGCATATGGAATTCTTGGGAATTCAGACACAGATTCTGTTGAAATGGAACATGATTTTGATTCTGGATATGAAGAATTTGACTTCAGTGAGATTTTTGTTCACCAAATGATACATACTATTGAGTTTGTATTAGGTGCCGTCTCCAACACTGCGTCTTATCTTCGGCTCTGGGCCCTCAGCTTGGCACACTCAGAGTTATCAGCTGTTTTCTATGAGAAGGTTCTTCAATCTGCATGGGGCTATAACAACATCTTCATACGTATAGCTGGATTTGCTGTGTTTGCTTCTGCAACTACGATGGTGTTGCTCCTTATGGAAACTCTCAGTGCTTTTCTCCATGCATTGCGTCTTCACTGGGTTGAGTTTCAAAATAAGTTCTATGAAGGGGATGGTTACAAATTCCATCCATTCTCTTTTACTTTACTTAGTGAAGAGGATGATTAATATATTGGCTGTATTACAAAAACAATCTTCAATGCCTTTTGAAGCTCACTTTATTCTTGTAATTTTAGCACGAGAAGGGAGGACAAAATTCTTACAATAAGGTAAAAGCAAATGGGTACAAAATTTCAGTTTACGTCCAACATTTGTTCAAAGTGGTGTGCTGGCAATTGGCTAACCAATTTTAACTGATGATGGAATTTCAATGAGGAAATGTGTGAATAATAGAGGAGCATTGCGCTGAATTGTATTGTATAGTAGGTTTCGTTTTCTGAACTCATACTCTGACTTCATGAGATCAGTCCACCTTCCATCGCTTGGATTGTGGAAAGTTGCAGACATGGTCTGAAGTTCCTACTGCCTATGAAATTGCAGTGATGCTATAGAGGCATTCTTCTTTTCCAAGTTGGTTCTCTGTAATATCTTTCCCAAAACTTGTAATCTTTCATTATTCATTCTCATTTGTCTTCTACGGGACACATTATCTAATTTAAGGGCAAACACATGATTGCATGAGTTATTAATGGTGGCCAGAAGGTGATTATATAGGATGTCAGCAAGTTCTGCTATTCAAAGGTTTCTAAAGTATCTTTAGATTGGAGATTCATGTGTGCTTCAAAATTTACCGAATACCTTTTCTTCCTTTTTCTGTATATTGT

Ace file of the UniGene sp_v3.0_unigene683

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	V-type H+-transporting ATPase subunit I [Arabidopsis thaliana] gb\|AAM14030.1\| putative vacuolar proton-ATPase subunit [Arabidopsis thaliana] gb\|AEC08134.1\| V-type H+-transporting ATPase subunit I [Arabidopsis thaliana]	-	-	0.0	67%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	70%
Sma3	Vacuolar proton atpase, putative	-	-	1.787e-12	-

Source	Gene names
Sma3	AT4g39080; ATPvA2; ATPvA3; At2g21410; At2g28520; At4g39080; CHLREDRAFT_115936; CHLREDRAFT_131895; CHLREDRAFT_438; CM0216.490.nc; F19H22.180; GSVIVT00002678001; GSVIVT00014511001; GSVIVT00024467001; GSVIVT00035934001; LOC_Os03g14690; LOC_Os10g10500; MICPUC

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plant-type vacuole membrane	GO:0009705	Cellular Component	-
Sma3	trans-Golgi network transport vesicle membrane	GO:0012510	Cellular Component	-
Sma3	proton-transporting two-sector ATPase complex, proton-transporting domain	GO:0033177	Cellular Component	-
Sma3	hydrogen ion transmembrane transporter activity	GO:0015078	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	ATP synthesis coupled proton transport	GO:0015986	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, V0/A0 complex, 116kDa subunit	IPR002490	-	0.0	-
Sma3	Zinc finger, C2H2	IPR007087	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G28520.1	VHA-A1 vacuolar proton ATPase A1 chr2:12210026-12215532 FORWARD LENGTH=817	68%
RefSeq	Arabidopsis thaliana	NP_850122.1	V-type H+-transporting ATPase subunit I [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002300733.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7SKS4

Fln msg: your sequence is shorter than subject: 768 - 818

Fln protein: ADKSPFQRTYANQVKRCAEMTRKLRFFREQINKSGLCPTGSPREQATDFDELEVQFGEYEAELQEINENSEKLQRTYNELLEFKLVLQKVGFLLSTSANVVAHQTELDETSYVEPEFTDSSLLLEQEAQTELSKQVRLGFICGLVPKAKAIQFERILFRATRGNMLFKHVTVEEHVKDPVLCEMVEKVVFVVFFSGERARTKVVKICEAFGASRYPFPEDASKQRRIIEEVLERLSELKTTIDAGIRHRNNVLTTIGYQLEKWTVLVKKEKAIYHTLNMLNVDVTKKCLVGEGWCPVYAKAEIQDVLHRAAFESNSQVASIFHTLHATESPPTYFRTNKFTGAFQEIVDAYGMAKYREANPTVYTIITFPFLFAVMFGDWGHGLCLLIATLVLICREKKLGRQKLGDIMEMAFAGRYVLLMMALFSIYCGLIYNEFFSVPFHIFGPSAYKCRDPSCSDASKDGMIKYREPYPFGIDPMWRGSRTELPFLNSLKMKMSILLGVAQMNLGIVLSYFNAKFFSNSLNIWYQFVPQMIFLNSLFGYLALLIIIKWCSGSKADLYHVMIYMFLSPTDDLGENQLFWGQRLVQIVLLLLAFAAVPWMLLPKPLILRKQHRQRLQGRAYGILGNSDTDSVEMEHDFDSGYEEFDFSEIFVHQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSAVFYEKVLQSAWGYNNIFIRIAGFAVFASATTMVLLLMETLSAFLHALRLHWVEFQNKFYEGDGYKFHPFSFTLLSEEDD*

Protein Length: 769

Fln nts: ATGCAGATAAGAGCCCATTCCAACGTACTTATGCTAATCAGGTTAAACGATGTGCAGAGATGACTCGGAAGTTGCGTTTCTTTAGAGAGCAAATAAATAAATCTGGCTTATGTCCTACTGGGTCCCCTCGTGAACAAGCCACTGATTTTGATGAGCTTGAGGTTCAATTTGGTGAATATGAAGCTGAACTTCAAGAAATAAATGAAAACAGTGAAAAATTGCAGCGTACTTACAATGAACTATTAGAATTTAAGCTTGTGCTGCAAAAGGTTGGGTTCTTACTCTCTACATCTGCCAATGTGGTTGCTCATCAAACAGAGCTAGATGAAACTTCATATGTTGAACCTGAATTCACGGACAGTTCATTGTTATTAGAACAGGAAGCACAGACAGAGCTTTCAAAGCAAGTAAGACTAGGGTTTATCTGTGGACTTGTTCCCAAAGCCAAGGCTATACAATTTGAAAGGATTCTTTTTCGTGCTACAAGGGGGAACATGTTATTCAAGCATGTGACAGTTGAGGAACATGTAAAGGACCCAGTGCTATGTGAAATGGTTGAAAAAGTTGTGTTTGTCGTGTTCTTTTCTGGAGAACGAGCTAGAACAAAAGTAGTGAAGATATGTGAAGCATTTGGAGCTAGTCGGTATCCTTTCCCTGAGGATGCTAGTAAGCAGAGGCGAATTATAGAAGAGGTACTTGAAAGACTTTCTGAACTTAAAACAACAATTGACGCTGGCATCCGTCATCGAAACAACGTTCTTACAACAATTGGATATCAGCTAGAAAAATGGACTGTGCTGGTGAAAAAGGAGAAAGCTATTTATCACACACTAAACATGCTCAATGTTGATGTGACTAAGAAGTGTCTTGTTGGGGAGGGCTGGTGCCCTGTCTATGCAAAAGCTGAGATTCAAGATGTATTGCACCGTGCAGCGTTTGAGAGCAACTCACAAGTTGCAAGCATATTCCATACACTGCATGCCACTGAGTCGCCGCCTACATATTTCAGGACGAACAAGTTCACTGGGGCTTTCCAAGAAATTGTTGATGCATATGGCATGGCAAAGTATCGGGAAGCAAATCCTACAGTATACACAATCATCACGTTTCCATTTTTGTTTGCTGTTATGTTTGGTGATTGGGGTCATGGCCTATGCTTATTGATTGCAACATTGGTGCTCATTTGTAGAGAGAAAAAACTTGGACGTCAGAAACTTGGAGACATTATGGAGATGGCATTTGCAGGGCGTTATGTTCTTTTAATGATGGCATTGTTCTCAATTTACTGTGGACTAATTTACAATGAATTCTTTTCAGTTCCTTTTCATATATTTGGCCCATCTGCCTACAAATGTCGCGATCCTTCCTGCAGTGATGCTTCTAAAGATGGTATGATTAAGTATCGTGAACCATATCCATTTGGCATTGATCCTATGTGGCGTGGTAGCAGAACAGAACTGCCATTCCTAAATTCATTGAAAATGAAGATGTCCATTTTGTTGGGTGTTGCTCAAATGAATTTGGGGATTGTTCTGAGTTATTTCAATGCAAAGTTCTTTTCCAATTCACTTAATATTTGGTATCAATTTGTGCCCCAGATGATTTTTTTAAACAGTCTCTTTGGTTATCTTGCTCTCTTAATTATCATCAAGTGGTGCAGTGGTTCTAAAGCTGATCTATATCATGTAATGATATATATGTTCTTGAGTCCTACTGATGACCTTGGTGAAAATCAACTGTTTTGGGGTCAGAGATTGGTTCAGATTGTGTTGCTACTGTTAGCTTTTGCTGCAGTTCCTTGGATGCTTCTTCCAAAACCTTTAATTTTAAGGAAGCAACATCGTCAGAGACTTCAAGGTCGTGCATATGGAATTCTTGGGAATTCAGACACAGATTCTGTTGAAATGGAACATGATTTTGATTCTGGATATGAAGAATTTGACTTCAGTGAGATTTTTGTTCACCAAATGATACATACTATTGAGTTTGTATTAGGTGCCGTCTCCAACACTGCGTCTTATCTTCGGCTCTGGGCCCTCAGCTTGGCACACTCAGAGTTATCAGCTGTTTTCTATGAGAAGGTTCTTCAATCTGCATGGGGCTATAACAACATCTTCATACGTATAGCTGGATTTGCTGTGTTTGCTTCTGCAACTACGATGGTGTTGCTCCTTATGGAAACTCTCAGTGCTTTTCTCCATGCATTGCGTCTTCACTGGGTTGAGTTTCAAAATAAGTTCTATGAAGGGGATGGTTACAAATTCCATCCATTCTCTTTTACTTTACTTAGTGAAGAGGATGATTAA___TATATTGGCTGTATTACAAAAACAATCTTCAATGCCTTTTGAAGCTCACTTTATTCTTGTAATTTTAGCACGAGAAGGGAGGACAAAATTCTTACAATAAGGTAAAAGCAAATGGGTACAAAATTTCAGTTTACGTCCAACATTTGTTCAAAGTGGTGTGCTGGCAATTGGCTAACCAATTTTAACTGATGATGGAATTTCAATGAGGAAATGTGTGAATAATAGAGGAGCATTGCGCTGAATTGTATTGTATAGTAGGTTTCGTTTTCTGAACTCATACTCTGACTTCATGAGATCAGTCCACCTTCCATCGCTTGGATTGTGGAAAGTTGCAGACATGGTCTGAAGTTCCTACTGCCTATGAAATTGCAGTGATGCTATAGAGGCATTCTTCTTTTCCAAGTTGGTTCTCTGTAATATCTTTCCCAAAACTTGTAATCTTTCATTATTCATTCTCATTTGTCTTCTACGGGACACATTATCTAATTTAAGGGCAAACACATGATTGCATGAGTTATTAATGGTGGCCAGAAGGTGATTATATAGGATGTCAGCAAGTTCTGCTATTCAAAGGTTTCTAAAGTATCTTTAGATTGGAGATTCATGTGTGCTTCAAAATTTACCGAATACCTTTTCTTCCTTTTTCTGTATATTGT

Fln Alignment:

Contig683___ADKSPFQRTYANQVKRCAEMTRKLRFFREQINKSGLCPTGSPREQAT-DFDELEVQFGEYEAELQEINENSEKLQRTYNELLEFKLVLQKV-GFLLSTSANVVAHQTELDETSYVEPEFTDSSLLLEQEAQTELSKQVRLGFICGLVPKAKAIQFERILFRATRGNMLFKHVTVEEHVKDPVLCEMVEKXXXXXXXSGERARTKVVKICEAFGASRYPFPEDASKQRRIIEEVLERLSELKTTIDAGIRHRNNVLTTIGYQLEKWTVLVKKEKAIYHTLNMLNVDVTKKCLVGEGWCPVYAKAEIQDVLHRAAFESNSQVASIFHTLHATESPPTYFRTNKFTGAFQEIVDAYGMAKYREANPTVYTIITFPFLFAVMFGDWGHGLCLLIATLVLICREKKLGRQKLGDIMEMAFAGRYVLLMMALFSIYCGLIYNEFFSVPFHIFGPSAYKCRDPSCSDASKDGMIKYREPYPFGIDPMWRGSRTELPFLNSLKMKMSILLGVAQMNLGIVLSYFNAKFFSNSLNIWYQFVPQMIFLNSLFGYLALLIIIKWCSGSKADLYHVMIYMFLSPTDDLGENQLFWGQRLVQIVLLLLAFAAVPWMLLPKPLILRKQHRQRLQGRAYGILGNSDTDSVEMEHD-FDSGYEEFDFSEIFVHQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSAVFYEKVLQSAWGYNNIFIRIAGFAVFASATTMVLLLMETLSAFLHALRLHWVEFQNKFYEGDGYKFHPFSFTLLSEEDD
D7SKS4_____________ADKSPFQRTFVNQVKRCGEMARKLRFFKDQVSKAGLISSARPDLQPDIELEELEIQLSEHEHELLEMNSNSEKLRQTYNELLEFKMVLQKASGFLVSSKSHAVVEERELDETAYSKDRYVETASLLEQEMGPGPSNQSGLRFISGIICKSKALRFERMLFRATRGNMLFNQATADEHIMDPVSTEMIEKTVFVVFFSGEQAKTKILKICEAFGANCYPVPEDMTKQRQISREVLARLSELEATLDAGIRHRNKALSSIGFHLMKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKAQIQEALQRATFDSNSQVGIIFHVMDAVESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVYTVITFPFLFAVMFGDWGHGICLLLGALVLIARESKLSSQKLGSFMEMLFGGRYVLLLMSIFSIYCGLIYNEFFSVPYHIFGGSAYKCRDATCSNSNTVGLIKYQDTYPFGVDPSWRGSRSELPFLNSLKMKMSILLGVTQMNLGIVLSYFNARFFGSSLDIRYQFVPQVIFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMFLSPTDNLGENQLFWGQRPLQIILLLLALIAVPWMLFPKPFILKKLHSERFQGRAYGILGTSEMD-LEVEPDSARQHHEEFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYNNFVIRMVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFASLIDDED

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1358		66	33		0.997452
1412	75		25		0.996473
1487			83	16	0.994512
1488	83		16		0.994512
1717	16		83		0.994512
1721	83			16	0.994512
1900		40	60		1.0
1924			16	83	0.994512
1925		83	16		0.994512
2007		85		14	0.993533
2387	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain