SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene681

Length: 1639 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene681

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RVT_2 domain containing protein	-	-	0.0	52%
FL-Next	tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	54%
Sma3	Retrotransposon protein, putative, Ty1-copia subclass	-	-	8.754e-19	-

Source	Gene names
Sma3	AT4g03810; AT4g10460; AT4g21360; At2g07550; At2g13930; At2g19840; At2g21460; B1110B01.4; BA4; F11I4_21; F28L22.3; F7L13.40; F9K21.100; H0306F03.15; H0413E07.4; H0512B01.8; LOC_Os03g05850; LOC_Os03g13700; LOC_Os03g24260; LOC_Os03g25890; LOC_Os03g35560; LOC

Source	GOs	Term	Type	Identity
Sma3	phosphopyruvate hydratase complex	GO:0000015	Cellular Component	-
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	dihydrofolate reductase activity	GO:0004146	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	exonuclease activity	GO:0004527	Molecular Function	-
Sma3	phosphopyruvate hydratase activity	GO:0004634	Molecular Function	-
Sma3	polygalacturonase activity	GO:0004650	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ionotropic glutamate receptor activity	GO:0004970	Molecular Function	-
Sma3	extracellular-glutamate-gated ion channel activity	GO:0005234	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	nutrient reservoir activity	GO:0045735	Molecular Function	-
Sma3	NADP binding	GO:0050661	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	glycolysis	GO:0006096	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	glycine biosynthetic process	GO:0006545	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	nucleotide biosynthetic process	GO:0009165	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	transposition	GO:0032196	Biological Process	-
Sma3	recognition of pollen	GO:0048544	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Cytosolic fatty-acid binding	IPR000463	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Glycoside hydrolase, family 28	IPR000743	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Enolase	IPR000941	-	-
Sma3	CCAAT-binding transcription factor, subunit B	IPR001289	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Dihydrofolate reductase domain	IPR001796	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Germin	IPR001929	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Stem cell self-renewal protein Piwi	IPR003165	-	-
Sma3	HhH-GPD domain	IPR003265	-	-
Sma3	Helix-hairpin-helix DNA-binding motif, class 1	IPR003583	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Cupin 1	IPR006045	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR010256	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Dihydrofolate reductase	IPR012259	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	Domain of unknown function DUF1785	IPR014811	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Intermediate filament protein, conserved site	IPR018039	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-
Sma3	Superoxide dismutase, copper/zinc, binding site	IPR018152	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3	Germin, manganese binding site	IPR019780	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9M5J7

Fln msg: your sequence is shorter than subject: 526 - 542

Fln protein: YLLLTDSGEPECYEEAMQVESRKKWEVAMEEEMDSLMHNHTWDLVRLPAGKTTLQNKWVYRLKEEDGGKQRYKARLVVKGFAQKKGIDFDEIFSPVVKMTSIRTILSLVAVEDLHLEQLDVKTTFLHGDLEEEIYMQQPQGYEVKGKEKLVCRLKKSLYGLKQAPRQWYLKFDKFMSEQGYTRCHSDHCVYLKKQNDGSYIILVLYVDDMLVTGSNMQEINVLKRKLANSFAMKDLGAAKQILGMRITRDRKNRKLTLSQNEYIQKVLKRFNMQNAKPVSTPFASHFKLSKEMCPKTQEDMDYMSKVPYASAVGSLMYAMVCTRPDIAHAVGVVSRYMNNPGKEHWMAVKWILRYLKGTTNQALCFGGSNISLQGYVDADMAGDRDNRRSTTGYVFTVGGTAVSWVSKIQSVVALSTTEAEYVAATEASKEMIWLQRFMGELGKEHDMGTLYSDSQSAIHLAKNSAFHSRTKHIQLKYHFIRSVLEDGELKLEKIHTSQNPADMLTKVVTREKLRICSVSVGLQG*

Protein Length: 527

Fln nts: TATTTATTGTTGACTGATTCTGGTGAACCCGAATGTTATGAAGAAGCAATGCAGGTTGAAAGCAGGAAGAAGTGGGAGGTAGCCATGGAAGAAGAGATGGACTCCTTAATGCATAACCATACTTGGGACTTAGTCAGGTTGCCTGCAGGTAAAACTACATTGCAGAATAAATGGGTTTATAGGCTGAAGGAAGAAGATGGAGGAAAACAGAGGTACAAAGCTAGACTTGTGGTGAAGGGGTTTGCACAGAAGAAAGGTATTGATTTTGATGAAATATTTTCTCCTGTTGTTAAAATGACTTCAATCAGAACTATTTTAAGTCTAGTAGCAGTTGAAGATTTGCATCTTGAGCAATTAGATGTAAAGACAACATTTCTCCATGGGGATTTGGAGGAAGAGATATATATGCAGCAGCCACAAGGATATGAGGTGAAAGGGAAGGAGAAACTAGTGTGCAGGTTGAAGAAGAGCTTGTATGGCTTAAAACAGGCTCCAAGGCAGTGGTATCTAAAATTTGACAAGTTTATGTCTGAACAAGGTTATACTAGATGTCACTCTGATCATTGTGTTTATCTGAAAAAGCAAAATGATGGCAGCTATATTATATTGGTATTGTATGTAGATGACATGCTTGTTACAGGATCTAACATGCAGGAAATAAATGTGCTCAAAAGAAAATTGGCAAATTCATTTGCAATGAAGGATTTGGGAGCTGCAAAACAAATCCTTGGTATGAGAATAACTAGAGACAGGAAAAATCGCAAATTAACATTGTCTCAGAATGAGTACATACAAAAGGTGTTGAAAAGATTTAACATGCAAAATGCAAAACCAGTTAGTACACCTTTTGCTAGCCATTTCAAACTTAGCAAAGAAATGTGCCCAAAGACTCAAGAAGACATGGATTATATGTCTAAAGTTCCATATGCATCAGCAGTTGGAAGTTTAATGTATGCAATGGTCTGCACAAGGCCTGATATTGCACATGCAGTGGGAGTTGTAAGCAGGTACATGAACAATCCAGGAAAGGAACATTGGATGGCAGTGAAATGGATTCTCAGATATTTGAAAGGTACCACAAATCAAGCATTATGCTTTGGTGGTTCAAACATATCCCTACAAGGATATGTTGATGCAGATATGGCAGGTGACAGAGATAACAGGAGGAGCACTACAGGATATGTATTCACTGTTGGTGGAACAGCTGTCAGTTGGGTTTCAAAAATCCAAAGTGTTGTTGCACTTTCAACAACAGAAGCAGAGTATGTTGCTGCTACAGAGGCTAGTAAAGAAATGATTTGGTTACAAAGGTTTATGGGTGAATTGGGTAAGGAGCATGATATGGGCACGTTATACAGTGATAGTCAAAGTGCCATTCATCTTGCAAAGAACTCAGCATTTCATTCCAGGACTAAACACATACAACTCAAGTACCATTTCATACGATCAGTGTTGGAAGATGGAGAATTGAAGCTGGAAAAGATACACACTAGCCAGAACCCTGCAGATATGCTAACAAAAGTTGTAACCAGGGAGAAACTGAGAATATGCTCAGTTTCAGTTGGTCTTCAAGGATGA___CGATGAAGATGAGAAACAGCCAGGTCCAAAGAGGAGTCATTGTCCAGCAAATGGAGCAGCG

Fln Alignment:

Contig681___LLLTDSGEPECYEEAMQVESRKKWEVAMEEEMDSLMHNHTWDLVRLPAGKTTLQNKWVYRLKEEDGGK-QRYKARLVVKGFAQKKGIDFDEIFSPVVKMTSIRTILSLVAVEDLHLEQLDVKTTFLHGDLEEEIYMQQPQGYEVKGKEKLVCRLKKSLYGLKQAPRQWYLKFDKFMSEQGYTRCHSDHCVYLKKQNDGSYIILVLYVDDMLVTGSNMQEINVLKRKLANSFAMKDLGAAKQILGMRITRDRKNRKLTLSQNEYIQKVLKRFNMQNAKPVSTPFASHFKLSKEMCPKTQEDMDYMSKVPYASAVGSLMYAMVCTRPDIAHAVGVVSRYMNNPGKEHWMAVKWILRYLKGTTNQALCFGGSN-----ISLQGYVDADMAGDRDNRRSTTGYVFTVGGTAVSWVSKIQSVVALSXXXXXXXXXXXXSKEMIWLQRFMGELGKEHDMGTLYSDSQSAIHLAKNSAFHSRTKHIQL
Q9M5J7_____________LSITDD-DPITVREAVNSEDSKLWKKPMVEEMDSLDKNESWDIVELLARRKSVGRKWLFKKKFNVEGKVEKYKARLVEKGYSQVEGIEFGEIFSPVAKLTSIRFLLSIVVAFDLEVEQMDVKTTFLHGDLEEEIYMKQPEGFVVKGNKELVCKINKSLCGVKQSPRMWYQKFDTYILRLGFVISRADHCVY-SKQVGNHFIYVVLYVDDMLLVGNNMDVIKEVKSQLSSKFDMKDLGAANFILGMDIKRDRANRKLWLNQRKYVETILQRFNIHGSKPVKVPIPIGVNLSADQCPKIQEEEEDMSHVPYASAVGSLMYAMVCTRPDIAHAVGFLSRYMSKLGKEHWTTVKRVFRYLHGTTSYGLCYQGRSGLDRVVDIHGFVDADWVGDLDHIRSTSGYVFNLFGGAISWMSKIQALVALSTTEAEYMVATHASQGSIWLQRLCSGIGLVQQVVRLDCEIQSAIFMAKNPAYDSKTNHIDV

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
219	75			25	0.996473
249	20		80		0.995493
299		60		40	1.0
306		80		20	0.995493
308	20		80		0.995493
311		80		20	0.995493
319	60	40			1.0
324	60			40	1.0
327	60		40		1.0
332		40		60	1.0
354	60		40		1.0
360			20	80	0.995493
369		75		25	0.996473
370	75		25		0.996473
373	50	50			1.0
415	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain