SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene675

Length: 2521 nt

UniGene Fasta

>sp_v3.0_unigene675
CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGGCTGGGGAAGAACAAGATCTGAACTGCCAATGCTTTGTTTCTTGGCCTGTCAAGTTTCGCTGCCGCGATCGAATCGGAGATCTGAACTAGCTTTTCTTTGATCTGCAGGTCCACTGCAAGGATCTTTGTTTCTCCCTCCGCCAAGGGTTCACGACTGCAGACTCGTTCGCAAGATCTGCTATAGATTTCGAGAATAGCAAGTTCAAGCCCGTTCGTCTACGAAATCGATCGTTCGAGGCGTGTAGACGGATACAGGACATTGTTTTCTGTGGCTTAAACGTGGAGGTGGGAATGTCATCGTTTGGGGAGCCTGACGGCAAAGCTCAGGCTTACAGCCGGAAGGAGAAATCGCTGGGGTTGCTGTGCGTAAATTTTCTGAATCACTACACGCAAGAGCAAGTGGATTCCATCAGCCTCGATGAAGCTGCGTTCCGCTTAGGTGTGGAGCGGCGCCGGATTTACGATATCGTTAACGTTTTGGAAAGTGTCGGGGTCCTGGTTAGAAAAGCCAAGAATCGGTATACCTGGAAAGGATACGAGGGGATTCCAAGAGCTCTGGAAAAACTGCGAGAAGCCGCTCTAAATGGAGAGGTCCTTAATGGCGTGACAAATCTATCAGATTTATCGGAGATCAAGATGAATAATGTGCGGGTCTGTTTGGTGTCTGATGACGAAGAAGAGGAACATTCATCAAATGAGAATGTCTGCCCTCCGGAGAACACAAAGCACCAAGGTAAACGGCCTTTAAACAAGAGTAGTCCCGTTTCAGTCCTTACGGAGGCATCGAAGGGTAGTCCTGCTAAATCTAAAGCAGATTGCAGGCGTGAGAAATCTCTAGGCCTTCTCACGCAGAAATTTGTGCAGCTCTTTCTCGTAACACAGGCACAAGTAGTATCACTGGAAGACGCCGCTAGGCTGCTGCTAGGTGAATGCAAAGAATCTGCAAAACTAAAAACTAAAGTAAGGCGATTATACGACATTGCGAATATTTTATCGTCTTTGAATCTCATAGAAAAGACTCACAATACGGAGAATCGGAAGCCTGCTTTCAAGTGGCTTGGAGTCAAAGATAATGCAAAATACACGGCCGAAATGGCGACGAGGAAAAGACAGTTTGGAACCGTGCTTTCCACAAATACTAACATGACGTCTGTCCCCAAAGCAAAGCGCGGCCGTCCATCGATCAAGGACGCGTTCGAATCTGGCCTCCAACCGCTAAATGGCGCTAAAGGCTCCTCCGTCCTGAAGCCTCTACAGCCCAAGGCTACAAACGTAGCCGGGGCCGTGTACAATCCCGTCCCAGTCTATCCACGCGAAGGCTCTGCCATTCCCATGCCGGGCATGGCTGCTTCAGCCCCCGGGGTGCCGACGAGCCTGACACTCGGTACATCCGGCGGATGGAGGGAATGGACCACAGCCGACTCTCAAAGAGTCTCAGAACAGAAAAGCAACGATTCTGCTGGTGCAGCTGCTGGATCTTCTCCCACTTTAAAGACTTCAAATTTAAGCAGGCCAAGTTTCCCATCGAGGACCAGGGACTGCTCTGCCGGTTTCAGCTACGGCCCATTCTGTCCGTTCCGTTTACAACAGCAATGTTTAGCCGGCATCTACCCTCCCCAAGGTTTCGACCGTGCAAACGATCGGCCTGATGAGAATCAAGATCCGGAAGGTTCATCTCAAGAATCTGAAGTAACAAACCCCTTTTCCATGCAGTACCAGAATGAAGCCATGGACCAAATGTTCGCGCACTGCATGAATGCTTGGAAGTCATGGTACTTTCAAGCGGCTGTCTCTGCAACGGCGAACGCAACTTCGGCTTCGTCTCCAGTTCGTTCCGGTCACGAGCCCAGCGATTCGGTTACGGAAGCGACATGAAAACAAAACCACAATTAGTATTCGAAAACAGGTTTCCATTCCTTTGTACACCATACAGATCGTTCATTAAGATTGCAATTACTTATTGATAAAACAAGAAAGGGTGAGTTTCTACAGGAAGAAGACAGAAAGCCTTCGATTAGGGACACAGTGATGACATGATGTGTGCATGCAATTGGCCCAGATTGCATGTGTATGCCTGCATTTTATATATTTCAAATATGATTATTTCCCACGGGTATCCGTATAGCGCCGAATCTTGGTGGGTTCCACTGTAAAAAGCACACGGCTCTCAAATGCCAGCAATTAATGCCCCAGATTAGCTGTGGAAGGGAAACATGACAAACTCAGTCATTGGAGGCGTAATTTTAATTTGACTTGTAGAAACCTTGAATAAAATACCTTTGTGTGAAAGCATGTCTAGAATTTGGATGTCGATGGCCAAATTGAGTTTCACTTCGAAGGTACTTGTGTGTGCCAACCTTTTATTTTAATATATAGCAATTTTTATTGGGAGTTCAGTTTGCGTAAGTATTCAGTAAAAAGAGTTTACAATTCAAAATTTGTTACGTACATGGCGATATTCAATACATAGAATGTTACAATTT

Ace file of the UniGene sp_v3.0_unigene675

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein DP-E2F-like 1 [Arabidopsis thaliana] emb\|CAD10633.1\| transcription factor E2Fe [Arabidopsis thaliana] gb\|AEE78374.1\| protein DP-E2F-like 1 [Arabidopsis thaliana]	-	-	0.0	45%
FL-Next	tr=E2F-like protein; Pinus sylvestris (Scots pine).	-	-	0.0	34%
Sma3	Repressor, antagonist of e2f-dp complex	-	-	1.229e-08	-

Source	Gene names
Sma3	At3g01330; At3g48160; DEL; DEL1; DEL2; E2L2; E2L3; GSVIVT00016169001; GSVIVT00020855001; MICPUCDRAFT_58408; MICPUN_60948; OJ1136_C11.2; OSTLU_42726; Os02g0739700; Os06g0245900; OsI_08874; OsI_22357; OsJ_08321; OsJ_20799; Ot08g02880; P0684F11.26; PHYPADRAF

Source	GOs	Term	Type	Identity
Sma3	transcription factor complex	GO:0005667	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	negative regulation of DNA endoreduplication	GO:0032876	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	HMG-I/HMG-Y, DNA-binding, conserved site	IPR000637	-	-
Sma3	Transcription factor E2F/dimerisation partner (TDP)	IPR003316	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	E2F Family	IPR015633	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G48160.2	-	45%
RefSeq	Arabidopsis thaliana	NP_851012.1	protein DP-E2F-like 1 [Arabidopsis thaliana]	45%
RefSeq	Populus trichocarpa	XP_002318015.1	repressor, antagonist of e2f-dp complex [Populus trichocarpa]	45%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: H6VN38

Fln msg: your sequence is longer than subject: 528 - 380

Fln protein: MSSFGEPDGKAQAYSRKEKSLGLLCVNFLNHYTQEQVDSISLDEAAFRLGVERRRIYDIVNVLESVGVLVRKAKNRYTWKGYEGIPRALEKLREAALNGEVLNGVTNLSDLSEIKMNNVRVCLVSDDEEEEHSSNENVCPPENTKHQGKRPLNKSSPVSVLTEASKGSPAKSKADCRREKSLGLLTQKFVQLFLVTQAQVVSLEDAARLLLGECKESAKLKTKVRRLYDIANILSSLNLIEKTHNTENRKPAFKWLGVKDNAKYTAEMATRKRQFGTVLSTNTNMTSVPKAKRGRPSIKDAFESGLQPLNGAKGSSVLKPLQPKATNVAGAVYNPVPVYPREGSAIPMPGMAASAPGVPTSLTLGTSGGWREWTTADSQRVSEQKSNDSAGAAAGSSPTLKTSNLSRPSFPSRTRDCSAGFSYGPFCPFRLQQQCLAGIYPPQGFDRANDRPDENQDPEGSSQESEVTNPFSMQYQNEAMDQMFAHCMNAWKSWYFQAAVSATANATSASSPVRSGHEPSDSVTEAT*

Protein Length: 529

Fln nts: CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGGCTGGGGAAGAACAAGATCTGAACTGCCAATGCTTTGTTTCTTGGCCTGTCAAGTTTCGCTGCCGCGATCGAATCGGAGATCTGAACTAGCTTTTCTTTGATCTGCAGGTCCACTGCAAGGATCTTTGTTTCTCCCTCCGCCAAGGGTTCACGACTGCAGACTCGTTCGCAAGATCTGCTATAGATTTCGAGAATAGCAAGTTCAAGCCCGTTCGTCTACGAAATCGATCGTTCGAGGCGTGTAGACGGATACAGGACATTGTTTTCTGTGGCTTAAACGTGGAGGTGGGA_-_ATGTCATCGTTTGGGGAGCCTGACGGCAAAGCTCAGGCTTACAGCCGGAAGGAGAAATCGCTGGGGTTGCTGTGCGTAAATTTTCTGAATCACTACACGCAAGAGCAAGTGGATTCCATCAGCCTCGATGAAGCTGCGTTCCGCTTAGGTGTGGAGCGGCGCCGGATTTACGATATCGTTAACGTTTTGGAAAGTGTCGGGGTCCTGGTTAGAAAAGCCAAGAATCGGTATACCTGGAAAGGATACGAGGGGATTCCAAGAGCTCTGGAAAAACTGCGAGAAGCCGCTCTAAATGGAGAGGTCCTTAATGGCGTGACAAATCTATCAGATTTATCGGAGATCAAGATGAATAATGTGCGGGTCTGTTTGGTGTCTGATGACGAAGAAGAGGAACATTCATCAAATGAGAATGTCTGCCCTCCGGAGAACACAAAGCACCAAGGTAAACGGCCTTTAAACAAGAGTAGTCCCGTTTCAGTCCTTACGGAGGCATCGAAGGGTAGTCCTGCTAAATCTAAAGCAGATTGCAGGCGTGAGAAATCTCTAGGCCTTCTCACGCAGAAATTTGTGCAGCTCTTTCTCGTAACACAGGCACAAGTAGTATCACTGGAAGACGCCGCTAGGCTGCTGCTAGGTGAATGCAAAGAATCTGCAAAACTAAAAACTAAAGTAAGGCGATTATACGACATTGCGAATATTTTATCGTCTTTGAATCTCATAGAAAAGACTCACAATACGGAGAATCGGAAGCCTGCTTTCAAGTGGCTTGGAGTCAAAGATAATGCAAAATACACGGCCGAAATGGCGACGAGGAAAAGACAGTTTGGAACCGTGCTTTCCACAAATACTAACATGACGTCTGTCCCCAAAGCAAAGCGCGGCCGTCCATCGATCAAGGACGCGTTCGAATCTGGCCTCCAACCGCTAAATGGCGCTAAAGGCTCCTCCGTCCTGAAGCCTCTACAGCCCAAGGCTACAAACGTAGCCGGGGCCGTGTACAATCCCGTCCCAGTCTATCCACGCGAAGGCTCTGCCATTCCCATGCCGGGCATGGCTGCTTCAGCCCCCGGGGTGCCGACGAGCCTGACACTCGGTACATCCGGCGGATGGAGGGAATGGACCACAGCCGACTCTCAAAGAGTCTCAGAACAGAAAAGCAACGATTCTGCTGGTGCAGCTGCTGGATCTTCTCCCACTTTAAAGACTTCAAATTTAAGCAGGCCAAGTTTCCCATCGAGGACCAGGGACTGCTCTGCCGGTTTCAGCTACGGCCCATTCTGTCCGTTCCGTTTACAACAGCAATGTTTAGCCGGCATCTACCCTCCCCAAGGTTTCGACCGTGCAAACGATCGGCCTGATGAGAATCAAGATCCGGAAGGTTCATCTCAAGAATCTGAAGTAACAAACCCCTTTTCCATGCAGTACCAGAATGAAGCCATGGACCAAATGTTCGCGCACTGCATGAATGCTTGGAAGTCATGGTACTTTCAAGCGGCTGTCTCTGCAACGGCGAACGCAACTTCGGCTTCGTCTCCAGTTCGTTCCGGTCACGAGCCCAGCGATTCGGTTACGGAAGCGACATGA___AAACAAAACCACAATTAGTATTCGAAAACAGGTTTCCATTCCTTTGTACACCATACAGATCGTTCATTAAGATTGCAATTACTTATTGATAAAACAAGAAAGGGTGAGTTTCTACAGGAAGAAGACAGAAAGCCTTCGATTAGGGACACAGTGATGACATGATGTGTGCATGCAATTGGCCCAGATTGCATGTGTATGCCTGCATTTTATATATTTCAAATATGATTATTTCCCACGGGTATCCGTATAGCGCCGAATCTTGGTGGGTTCCACTGTAAAAAGCACACGGCTCTCAAATGCCAGCAATTAATGCCCCAGATTAGCTGTGGAAGGGAAACATGACAAACTCAGTCATTGGAGGCGTAATTTTAATTTGACTTGTAGAAACCTTGAATAAAATACCTTTGTGTGAAAGCATGTCTAGAATTTGGATGTCGATGGCCAAATTGAGTTTCACTTCGAAGGTACTTGTGTGTGCCAACCTTTTATTTTAATATATAGCAATTTTTATTGGGAGTTCAGTTTGCGTAAGTATTCAGTAAAAAGAGTTTACAATTCAAAATTTGTTACGTACATGGCGATATTCAATACATAGAATGTTACAATTT

Fln Alignment:

Contig675___SSFGEPDGKAQ---AYSRKEKSLGLLCVNFLNHYTQEQVDSISLDEAAFRLGVERRRIYDIVNVLESVGVLVRKAKNRYTWKGYEGIPRALEKLREAALNGEVLNGVTNLSDLSEIKMNN
H6VN38_____________SNIGSPLGNAPTPISSCRYDSSLGLLTKKFISLVKQADDGILDLNTAADTLEVQKRRIYDITNVLEGIGLIEKRLKNRICWKGL-----SVSRPGEVEDEATVLQAEVDSLNLEECKLDD

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
371	25	75			0.996473
373			75	25	0.996473
374		75	25		0.996473
375		75		25	0.996473
659	90			10	0.90298
718			88	11	0.923564
719	88			11	0.923564
1867	66			33	0.997452
1958			40	60	1.0
1960		40		60	1.0
1964		60	40		1.0
1968	60			40	1.0
1970	60		40		1.0
1972	60			40	1.0
1977	40		60		1.0
1978		20		80	0.995493
2056			12	87	0.992554
2057	87		12		0.992554
2137	60		40		1.0
2225	87		12		0.999964
2227		12	87		0.999964
2228		87		12	0.999964
2231		87	12		0.999964
2232	87			12	0.999964
2233		25	75		1.0
2234	62		25		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain