SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene673

Length: 2648 nt

UniGene Fasta

>sp_v3.0_unigene673
TAGAAATCAGTTACTGCCACGATATTGGCCAAGGAGCACTGATCAGGAACTCCAATTGATATCTAGGGATTCAAATTCCAGTATAACACCTCTGTTTCAGAAGACATTGAGTGCAAGTGATGCAGGCAGGATCGGGCGCTTAGTACTTCCAAAAGCATGTGCAGAGGCATATTTTCCTCCAATATCACAACCAGAGGGAGTGCCTTTGACAGTTCAGGATTGTACAGGCAAGGATTGGTCATTTCAGTTTCGATATTGGCCAAATAACAATAGCAGGATGTATGTGCTAGAAGGAGTGACACCATGCATTCAGGCCATGCAATTGCAAGCAGGCGATACAGTAACGTTCAGCCGCCTTGATCCAGAAGGAAAGTTGGTCATGGGTTTCCGAAAGGCTCCTAATTCTGGATTGGTTCAGGAAGGCCAACCATCTACATCAGGCTTAGGGGCCTTTCTTGGCAATGGATTTAACTCTGGAAGTCCTGAAATTTTGAATGTTCTCCCATTTTCATCACTGGTTGGAAAAGAAGAATCTCATATAGATTCCTTAACAGATAAAAAAAGAAGCCGCAATCTTTGTGCAAAAAGCAAGAGGCTCTGCATGGACAATGAAGATGCTTTTGAATTGAAGTTAACGTGGGAGGAAGCACAGGATTTGCTTCACCCTCCTCCAAAGGCTGTCCCAAGCATTGTAATGATTGAAGGCCATGAGTTTGAAGAATATGAGGAGCCCCCAATGTTGTGCAAAAAAACAATTTTCACAGTCAAGCAATCAGGCCGAGAGCAGGATCAGTGGGCTCAGTGTGATGAATGTGGCTGTTGGCGCAGACTGCCTTTAGATGTCAAGGTGCCTATACAATGGACCTGTGCCGATAATTCATGGGATTCTAAAAGGGCTTCTTGTTCAATACCTCAGGAAATAAGCTCTGCAGAATTAGAAGAACTTCTTCGCCTCAACATAGATATGAAGAAACAAAAAGCTGCACAGGGTCTAAAGGGAAAAGATCCTTCTTCTGGTCTAGACGCACTAGCCAATGCTGCAGTTCTTAATGAGAATGGTACTTCACCTCCTCTAATTGCTCAGACTACAAAACACCCTCGACACCGGCCTGGTTGCACATGTATTGTTTGTAGTCAGCCTCCTAGTGGAATGGGACCGAAACATAAACCCACTTGTACTTGCAATGTTTGTTTGACTGTTAAGCGCCGTTTTCAAACACTCATGATGCGCCGTAAGAAGCGTCAATCAGAACAAGATGCAGAAAAGGCAAAGAAAAGGCAAACTCTAGTGAAGGAAGAGGTAGAAGTGGACAGTGCACCAAAAGGACCATCAATCAACCAATGCTTGGAGAATGGTTGTAGTGATGGAGATGTAAAGACTGTTCATAATAAAGTGCCAGGTAATGGAGTCATGTTGCCCATGAGTCCGAATTTGCAGGGTTCTTACATAAGTAGTAGAACTAGCAAAGATGAATGCTGTGTCAGCAAAGGACAAATTGATTTGAATTGTCATCCAGACCGAGATGAGGAATTGTCAGGTGGAGGTGATCGTATGAGTATGCTGAGGCTACTCCAGGATGCCAATTCACCACTTGACATTTATCTCCAGCAGCAGGGTTTTACAGTCCAGCAGCAGGGTTTTACAGGGTTGATATCTTCTGAGCACGTAAGCATGCCCATGGTGGGATTCCAAAACAATCCAAGTGAACAAAGAGTGGATGATAAGAGCAGCATACCGCCAAAAGTTCACAATGCTGAACATAATAAGGATGATCGTTTCTTCCTACCAAATACATCATAAACTGACATACAATTAGTTTCATTTAAGGTTTTCAATCAGAACTTATAGGATGCATCTGGGCTCAGCAAGAAGCAGATGTAGTGACAATTCCTGGGAAACGTGGCTATCATTTATTTTAACGAAAACATCTCTGGAGGTTGAGTTGAATATAAACAAAAAAAATTTATAGCTCAGATAAGGTCCAAGTGATTTCTCGGTCCATTTCTTCCCAGCATGCACGGAGTACAGACATGGAATATGGATAAGGATGCAATAGACCATGCTGTTTTGTACTATCATTTCCATTTGCCTGCAAATGGAAATAGAAATGTACTGCCAACAGAATCCTGAGTGGCATCTTTAATTAAATTAGTAGCCTATATTTGGATGTTTGTAGAGGGTCTCCAGACTTGCCACCAGTCACTTTTGGGTAAAGCTTTGATTTGCTCCAGAAGTTGCAGATGGCAAGTCATCTTCGGCTTGAATATGTACAGGATTATTCTTTTTTAATGTGAAATTGTTCTTTTCCCCTGGGAAGTTGAGAGAGCTCTCCGAACAGTGATTTTTTTTTTTAATTTGGTTTGTAATTTTCAGTACATTTTGTACTGATGTCATTATGGTTCCAAATTCCATGGTGCAGCATAGCACTTTATCGATTTGAAGATGTAAAATGGATTGAGAAAATATTGTAAAAATGGGATTCTGTTTTAGCCTCAATATGTATTATGCACCAGTCGGTGTGTTAAGTTTTGGAATATTTGTTCTCAACAAGAAATGGATTTTGTTTCTTGGAGTTGAAACAAAAAGTTCTGTGCTGTACACATTCCTGGTCTTGCACCAATTCCATTTTATATATTGATTTCCTTTG

Ace file of the UniGene sp_v3.0_unigene673

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SRS4_RICCO	-	-	0.0	51%
FL-Next	tr=VP1/ABI3-like protein; Callitropsis nootkatensis.	-	-	0.0	37%
Sma3	Transcription factor, putative	-	-	8.596e-07	-

Source	Gene names
Sma3	At2g30470; At4g32010; F10N7.180; GSVIVT00009730001; GSVIVT00023935001; GSVIVT00037494001; HSI2; HSL1; OJ1205_F02.12; OJ1720_F04.105; Os07g0563300; Os07g0679700; OsI_26485; OsI_27346; OsJ_24747; OsJ_25593; PHYPADRAFT_120152; POPTRDRAFT_240006; POPTRDRAFT_4

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	SNAP receptor activity	GO:0005484	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	transcription repressor activity	GO:0016564	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to sucrose stimulus	GO:0009744	Biological Process	-
Sma3	positive regulation of seed germination	GO:0010030	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Target SNARE coiled-coil domain	IPR000727	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Syntaxin/epimorphin, conserved site	IPR006012	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, CW-type	IPR011124	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G30470.1	HSI2, VAL1 high-level expression of sugar-inducible gene 2 chr2:12980904-12984724 REVERSE LENGTH=790	54%
RefSeq	Arabidopsis thaliana	NP_850146.1	B3 domain-containing transcription repressor VAL1 [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002323669.1	predicted protein [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9FNS6

Fln msg: your sequence is shorter than subject: 600 - 794

Fln protein: RNQLLPRYWPRSTDQELQLISRDSNSSITPLFQKTLSASDAGRIGRLVLPKACAEAYFPPISQPEGVPLTVQDCTGKDWSFQFRYWPNNNSRMYVLEGVTPCIQAMQLQAGDTVTFSRLDPEGKLVMGFRKAPNSGLVQEGQPSTSGLGAFLGNGFNSGSPEILNVLPFSSLVGKEESHIDSLTDKKRSRNLCAKSKRLCMDNEDAFELKLTWEEAQDLLHPPPKAVPSIVMIEGHEFEEYEEPPMLCKKTIFTVKQSGREQDQWAQCDECGCWRRLPLDVKVPIQWTCADNSWDSKRASCSIPQEISSAELEELLRLNIDMKKQKAAQGLKGKDPSSGLDALANAAVLNENGTSPPLIAQTTKHPRHRPGCTCIVCSQPPSGMGPKHKPTCTCNVCLTVKRRFQTLMMRRKKRQSEQDAEKAKKRQTLVKEEVEVDSAPKGPSINQCLENGCSDGDVKTVHNKVPGNGVMLPMSPNLQGSYISSRTSKDECCVSKGQIDLNCHPDRDEELSGGGDRMSMLRLLQDANSPLDIYLQQQGFTVQQQGFTGLISSEHVSMPMVGFQNNPSEQRVDDKSSIPPKVHNAEHNKDDRFFLPNTS*

Protein Length: 601

Fln nts: TAGAAATCAGTTACTGCCACGATATTGGCCAAGGAGCACTGATCAGGAACTCCAATTGATATCTAGGGATTCAAATTCCAGTATAACACCTCTGTTTCAGAAGACATTGAGTGCAAGTGATGCAGGCAGGATCGGGCGCTTAGTACTTCCAAAAGCATGTGCAGAGGCATATTTTCCTCCAATATCACAACCAGAGGGAGTGCCTTTGACAGTTCAGGATTGTACAGGCAAGGATTGGTCATTTCAGTTTCGATATTGGCCAAATAACAATAGCAGGATGTATGTGCTAGAAGGAGTGACACCATGCATTCAGGCCATGCAATTGCAAGCAGGCGATACAGTAACGTTCAGCCGCCTTGATCCAGAAGGAAAGTTGGTCATGGGTTTCCGAAAGGCTCCTAATTCTGGATTGGTTCAGGAAGGCCAACCATCTACATCAGGCTTAGGGGCCTTTCTTGGCAATGGATTTAACTCTGGAAGTCCTGAAATTTTGAATGTTCTCCCATTTTCATCACTGGTTGGAAAAGAAGAATCTCATATAGATTCCTTAACAGATAAAAAAAGAAGCCGCAATCTTTGTGCAAAAAGCAAGAGGCTCTGCATGGACAATGAAGATGCTTTTGAATTGAAGTTAACGTGGGAGGAAGCACAGGATTTGCTTCACCCTCCTCCAAAGGCTGTCCCAAGCATTGTAATGATTGAAGGCCATGAGTTTGAAGAATATGAGGAGCCCCCAATGTTGTGCAAAAAAACAATTTTCACAGTCAAGCAATCAGGCCGAGAGCAGGATCAGTGGGCTCAGTGTGATGAATGTGGCTGTTGGCGCAGACTGCCTTTAGATGTCAAGGTGCCTATACAATGGACCTGTGCCGATAATTCATGGGATTCTAAAAGGGCTTCTTGTTCAATACCTCAGGAAATAAGCTCTGCAGAATTAGAAGAACTTCTTCGCCTCAACATAGATATGAAGAAACAAAAAGCTGCACAGGGTCTAAAGGGAAAAGATCCTTCTTCTGGTCTAGACGCACTAGCCAATGCTGCAGTTCTTAATGAGAATGGTACTTCACCTCCTCTAATTGCTCAGACTACAAAACACCCTCGACACCGGCCTGGTTGCACATGTATTGTTTGTAGTCAGCCTCCTAGTGGAATGGGACCGAAACATAAACCCACTTGTACTTGCAATGTTTGTTTGACTGTTAAGCGCCGTTTTCAAACACTCATGATGCGCCGTAAGAAGCGTCAATCAGAACAAGATGCAGAAAAGGCAAAGAAAAGGCAAACTCTAGTGAAGGAAGAGGTAGAAGTGGACAGTGCACCAAAAGGACCATCAATCAACCAATGCTTGGAGAATGGTTGTAGTGATGGAGATGTAAAGACTGTTCATAATAAAGTGCCAGGTAATGGAGTCATGTTGCCCATGAGTCCGAATTTGCAGGGTTCTTACATAAGTAGTAGAACTAGCAAAGATGAATGCTGTGTCAGCAAAGGACAAATTGATTTGAATTGTCATCCAGACCGAGATGAGGAATTGTCAGGTGGAGGTGATCGTATGAGTATGCTGAGGCTACTCCAGGATGCCAATTCACCACTTGACATTTATCTCCAGCAGCAGGGTTTTACAGTCCAGCAGCAGGGTTTTACAGGGTTGATATCTTCTGAGCACGTAAGCATGCCCATGGTGGGATTCCAAAACAATCCAAGTGAACAAAGAGTGGATGATAAGAGCAGCATACCGCCAAAAGTTCACAATGCTGAACATAATAAGGATGATCGTTTCTTCCTACCAAATACATCATAA___ACTGACATACAATTAGTTTCATTTAAGGTTTTCAATCAGAACTTATAGGATGCATCTGGGCTCAGCAAGAAGCAGATGTAGTGACAATTCCTGGGAAACGTGGCTATCATTTATTTTAACGAAAACATCTCTGGAGGTTGAGTTGAATATAAACAAAAAAAATTTATAGCTCAGATAAGGTCCAAGTGATTTCTCGGTCCATTTCTTCCCAGCATGCACGGAGTACAGACATGGAATATGGATAAGGATGCAATAGACCATGCTGTTTTGTACTATCATTTCCATTTGCCTGCAAATGGAAATAGAAATGTACTGCCAACAGAATCCTGAGTGGCATCTTTAATTAAATTAGTAGCCTATATTTGGATGTTTGTAGAGGGTCTCCAGACTTGCCACCAGTCACTTTTGGGTAAAGCTTTGATTTGCTCCAGAAGTTGCAGATGGCAAGTCATCTTCGGCTTGAATATGTACAGGATTATTCTTTTTTAATGTGAAATTGTTCTTTTCCCCTGGGAAGTTGAGAGAGCTCTCCGAACAGTGATTTTTTTTTTTAATTTGGTTTGTAATTTTCAGTACATTTTGTACTGATGTCATTATGGTTCCAAATTCCATGGTGCAGCATAGCACTTTATCGATTTGAAGATGTAAAATGGATTGAGAAAATATTGTAAAAATGGGATTCTGTTTTAGCCTCAATATGTATTATGCACCAGTCGGTGTGTTAAGTTTTGGAATATTTGTTCTCAACAAGAAATGGATTTTGTTTCTTGGAGTTGAAACAAAAAGTTCTGTGCTGTACACATTCCTGGTCTTGCACCAATTCCATTTTATATATTGATTTCCTTTG

Fln Alignment:

Contig673___LFQKTLSASDAGRIGRLVLPKACAEAYFPPISQPEGVPLTVQDC-TGKDWSFQFRYWPNNNSRMYVLEGVTPCIQAMQLQAGDTVTFSRLDPEGKLVMGFRKAPNS
Q9FNS6_____________LLQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISIAMEDIVTSRVWNMRYRFWPNNKSRMYLLENTGDFVRSNGLQEGDFIVLYSDTKTGKYMIRGVKVPRS

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1023	75		25		0.996473
1024		75		25	0.996473
1179	20	80			0.995493
1181			20	80	0.995493
1182			80	20	0.995493
1679	90			10	0.90298
1681		10	90		0.90298
1683		10		90	0.90298
1685	11		88		0.923564
1686		11	88		0.923564
1768	10		90		0.90298
1769		10	90		0.90298
2060		85		14	0.993533
2289	25			75	0.996473
2404		70		30	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain