SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene667

Length: 2713 nt

UniGene Fasta

>sp_v3.0_unigene667
CTTTCGGTATCAGATGGTGCAGCTATTGCAAGAAAGCCCTTCAAATCTCCCTGTTCTAATGGTCAAGTTAACAGCAATGAACAACTTGCCCGTCGCCTTCTTGCAAGGAAACGCTTTGTCCCATGGGGTTCTCAGAGACCAGCTTTGGTTCCAATCACTAATATGCCATCTTTGGCAAAATTGCCCATGGAAGAAATTCCAAAAGAGGAACTGTGTCTTCCTCCTGGCATTGAGCCACTTGTATTATGGCAACCTGAAGATATAAGTGGTGATGGAGTAAAATCTAAGCCAATAGTAGTGGACCCTGTCCTTGTTCGTTTCCTTCGGCCACACCAGCGGGAAGGTGTACAATTTATGTTTGAATGCATCGCAGGCTTGCGAGAATTCTCCAAAGTTGATGAAAGTCTTGCTGGCTGCATTTTGGCAGATGACATGGGTTTAGGGAAAACATTACAATCCATTACGCTTCTGTACACCCTTCTTCGGCAAGGATTTGATGACAAACCGATGGCTCAGAGGGTGATAATTGTTACTCCAACAAGCCTTGTAAGTAACTGGGAATCAGAAATAACAAAATGGCTTGAAGGACGAGTTTGTGTTATTGCAATGTGTGAAACAAGTCGTGCAGATGTGCTATCTGGGATCAACAGCTTTTTGGCCCCTCGTTCGCCGTTCCAGGTTATGATAATATCGTATGAGACGTTTCGCATGCATTCATCCAAGTTTGAGAAAGAAGGAAGTTGTTGTCTCCTTATTTGTGATGAAGCTCACAGGCTTAAGAATGATCAAACTATTACAAATCGAGCTTTAGCCAATCTCAAATGCCATAGACGGATTTTGTTGTCTGGAACACCCATGCAGAATGATCTTGAGGAGTTTTTTGCTATGGTCAATTTTGCTAATCCTGGAGTTTTAGGTGATGCAACAACATTTCGTCGCTACTATGAAATGCCAATTCTTCGTGGACGAGAGCCAACTGCAAGTGATGAAGAGAGGATGTTAGGTACAGATCGTTCTACAAAACTTAGCGAAAAAGTCAATCAGTTTATCTTGCGCCGAACAAATGCATTGTTATCCAATCATCTACCTCCAAAGATTGTGGAGGTGGTTTGCTGCAGGTTAACGGATCTTCAAGCTAATCTCTATCGACATTTTATTGAGTCTAAGAATGTGAAACAGGTACTTCAGGATCAAACCAAACGCTGCAAAGTTCTGGCCTCTATTACAGCCCTGAAAAAACTTTGTAACCATCCAAAACTAATCTATGACACTGTTCGAGGAGGCAGCTCAGAAACAGCAGGTTTTGAAAATTGTTTGCATTTTTTTCCACAGGAGATGTTTTCTGGCAGGTCAGGATCATGGACAGGGGGGGATGGAAGTTGGGTAGAGTTGTCTGGAAAGATGCATGTCTTGGCTAGACTTCTAGCGCATCTCTTTACGAAGACTGATGATCGTATTGTTCTTGTCTCAAACTACACTCAGACTCTAGATCTCTTTGCCCAAATTTGTCGGGAAAGGAAGTATCCATTTTTGAGGCTTGATGGAACTACTTCCATCGGGAAAAGAAGGAAATTGGTGCAGAGATTTAATGATCCTTCTCAGAATGAATTTGCTTTTCTCTTAAGCAGTAAAGCTGGAGGTTGTGGTTTAAATCTAATAGGTGGAAACCGCCTTGTGCTTTTTGATCCCGACTGGAATCCTGCCAATGACAAGCAGGCCGCTGCAAGAGTATGGAGAGATGGGCAAAAGAAGAGAGTATACATTTACAGATTTCTCACAACGGGAACAATTGAAGAAAAGGTGTATCAGCGGCAGATGTCTAAGGAAGGTCTTCAGAAGGTGGTTCAACAAGGGCAGACAGATGATCCGAAATTCCAGGTGAATTCATTCTCAAATGAAGATTTACGAGATCTATTTACTTTGCAAGATAGTATAAGGTCAGAAATTCATGAGAATATGGACTGTCAACGATGTAAAATAGATGTGTCAAGGGAGTCAGGTGATTCGGAAGATACAGGATCAGACCTTGCACCAAAAATAATTCCAGATGATTGTGAGACTTCAGATATTGGTGACTTTGCAAAGATTTCAGGGTGTTTACTCAAGCAGAGTTATTCAGAAAAGCAGTTAGGAACACCCATGGAAGAGGATTTACAAAGTTGGGCACATCACAAGTTTCCAGCTACAGTTCCAGATCTTGTACTTCAAGCTGCTGCTGGTGATGAGGTTTCTTTTGTATTTACAAATCAAGTTGATGGAAAACTTATTCCTGTTGAGTCTGCTGAAAGGAATGTGTTGGGCCAGAATGAGCGAGTAGTTAAAAAACAGATGCAATTTGGAAAATTGCTAGGTACAAAGACGTGCCAGTTACAAGAATCTACAGTTTCATCTCAGCAACAAGGAAACACTTTTCCAAGAACAGGACAACAATATGGTTCTATTCATCCCATTGAAAAGAGATCAAATTTACATCAGTTGTCCAATAAAATTTCCAAGTCATCCTGCATGGATCATTCAGATTCTAAGTTGAGCAGGCCGACTGTCTTTCATGTAGTTCAAAAGTCTCACTTACCAGTGAAAAGAATGTTTTCTGAGGCTGATGGTTTAGACGATGATTTTGCATAGCTTTAAATATTGTACAAAGTGCTTTTAAATGAAAAGCCTTATCCAACAAAATAAAGATGGCAAGTTGCATTTTTTCCTCGTCTCAATC

Ace file of the UniGene sp_v3.0_unigene667

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA repair and recombination protein RAD54B, putative n=1 Tax=Ricinus communis RepID=B9RYJ2_RICCO	-	-	0.0	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	SNF2 super family	-	-	6.56e-12	-

Source	Gene names
Sma3	AtRAD54; CHLREDRAFT_111277; CHLREDRAFT_117345; CHLREDRAFT_145450; CHR1505; CHR1543; CHR3511; GSVIVT00036577001; MICPUCDRAFT_11467; MICPUCDRAFT_57638; MICPUCDRAFT_58384; MICPUN_60933; MICPUN_99013; OSTLU_16586; Os02g0762800; OsI_09041; OsJ_08484; OsRad54;

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	double-strand break repair via homologous recombination	GO:0000724	Biological Process	-
Sma3	response to gamma radiation	GO:0010332	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G19210.1	ATRAD54, CHR25, RAD54 homolog of RAD54 chr3:6652799-6658876 REVERSE LENGTH=910	0.0	69%
RefSeq	Arabidopsis thaliana	NP_188552.3	Rad54-like protein [Arabidopsis thaliana]	0.0	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAS5

Fln msg: your sequence is longer than subject: 821 - 407

Fln protein: MPSLAKLPMEEIPKEELCLPPGIEPLVLWQPEDISGDGVKSKPIVVDPVLVRFLRPHQREGVQFMFECIAGLREFSKVDESLAGCILADDMGLGKTLQSITLLYTLLRQGFDDKPMAQRVIIVTPTSLVSNWESEITKWLEGRVCVIAMCETSRADVLSGINSFLAPRSPFQVMIISYETFRMHSSKFEKEGSCCLLICDEAHRLKNDQTITNRALANLKCHRRILLSGTPMQNDLEEFFAMVNFANPGVLGDATTFRRYYEMPILRGREPTASDEERMLGTDRSTKLSEKVNQFILRRTNALLSNHLPPKIVEVVCCRLTDLQANLYRHFIESKNVKQVLQDQTKRCKVLASITALKKLCNHPKLIYDTVRGGSSETAGFENCLHFFPQEMFSGRSGSWTGGDGSWVELSGKMHVLARLLAHLFTKTDDRIVLVSNYTQTLDLFAQICRERKYPFLRLDGTTSIGKRRKLVQRFNDPSQNEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLTTGTIEEKVYQRQMSKEGLQKVVQQGQTDDPKFQVNSFSNEDLRDLFTLQDSIRSEIHENMDCQRCKIDVSRESGDSEDTGSDLAPKIIPDDCETSDIGDFAKISGCLLKQSYSEKQLGTPMEEDLQSWAHHKFPATVPDLVLQAAAGDEVSFVFTNQVDGKLIPVESAERNVLGQNERVVKKQMQFGKLLGTKTCQLQESTVSSQQQGNTFPRTGQQYGSIHPIEKRSNLHQLSNKISKSSCMDHSDSKLSRPTVFHVVQKSHLPVKRMFSEADGLDDDFA*

Protein Length: 822

Fln nts: CTTTCGGTATCAGATGGTGCAGCTATTGCAAGAAAGCCCTTCAAATCTCCCTGTTCTAATGGTCAAGTTAACAGCAATGAACAACTTGCCCGTCGCCTTCTTGCAAGGAAACGCTTTGTCCCATGGGGTTCTCAGAGACCAGCTTTGGTTCCAATCACTAAT_-_ATGCCATCTTTGGCAAAATTGCCCATGGAAGAAATTCCAAAAGAGGAACTGTGTCTTCCTCCTGGCATTGAGCCACTTGTATTATGGCAACCTGAAGATATAAGTGGTGATGGAGTAAAATCTAAGCCAATAGTAGTGGACCCTGTCCTTGTTCGTTTCCTTCGGCCACACCAGCGGGAAGGTGTACAATTTATGTTTGAATGCATCGCAGGCTTGCGAGAATTCTCCAAAGTTGATGAAAGTCTTGCTGGCTGCATTTTGGCAGATGACATGGGTTTAGGGAAAACATTACAATCCATTACGCTTCTGTACACCCTTCTTCGGCAAGGATTTGATGACAAACCGATGGCTCAGAGGGTGATAATTGTTACTCCAACAAGCCTTGTAAGTAACTGGGAATCAGAAATAACAAAATGGCTTGAAGGACGAGTTTGTGTTATTGCAATGTGTGAAACAAGTCGTGCAGATGTGCTATCTGGGATCAACAGCTTTTTGGCCCCTCGTTCGCCGTTCCAGGTTATGATAATATCGTATGAGACGTTTCGCATGCATTCATCCAAGTTTGAGAAAGAAGGAAGTTGTTGTCTCCTTATTTGTGATGAAGCTCACAGGCTTAAGAATGATCAAACTATTACAAATCGAGCTTTAGCCAATCTCAAATGCCATAGACGGATTTTGTTGTCTGGAACACCCATGCAGAATGATCTTGAGGAGTTTTTTGCTATGGTCAATTTTGCTAATCCTGGAGTTTTAGGTGATGCAACAACATTTCGTCGCTACTATGAAATGCCAATTCTTCGTGGACGAGAGCCAACTGCAAGTGATGAAGAGAGGATGTTAGGTACAGATCGTTCTACAAAACTTAGCGAAAAAGTCAATCAGTTTATCTTGCGCCGAACAAATGCATTGTTATCCAATCATCTACCTCCAAAGATTGTGGAGGTGGTTTGCTGCAGGTTAACGGATCTTCAAGCTAATCTCTATCGACATTTTATTGAGTCTAAGAATGTGAAACAGGTACTTCAGGATCAAACCAAACGCTGCAAAGTTCTGGCCTCTATTACAGCCCTGAAAAAACTTTGTAACCATCCAAAACTAATCTATGACACTGTTCGAGGAGGCAGCTCAGAAACAGCAGGTTTTGAAAATTGTTTGCATTTTTTTCCACAGGAGATGTTTTCTGGCAGGTCAGGATCATGGACAGGGGGGGATGGAAGTTGGGTAGAGTTGTCTGGAAAGATGCATGTCTTGGCTAGACTTCTAGCGCATCTCTTTACGAAGACTGATGATCGTATTGTTCTTGTCTCAAACTACACTCAGACTCTAGATCTCTTTGCCCAAATTTGTCGGGAAAGGAAGTATCCATTTTTGAGGCTTGATGGAACTACTTCCATCGGGAAAAGAAGGAAATTGGTGCAGAGATTTAATGATCCTTCTCAGAATGAATTTGCTTTTCTCTTAAGCAGTAAAGCTGGAGGTTGTGGTTTAAATCTAATAGGTGGAAACCGCCTTGTGCTTTTTGATCCCGACTGGAATCCTGCCAATGACAAGCAGGCCGCTGCAAGAGTATGGAGAGATGGGCAAAAGAAGAGAGTATACATTTACAGATTTCTCACAACGGGAACAATTGAAGAAAAGGTGTATCAGCGGCAGATGTCTAAGGAAGGTCTTCAGAAGGTGGTTCAACAAGGGCAGACAGATGATCCGAAATTCCAGGTGAATTCATTCTCAAATGAAGATTTACGAGATCTATTTACTTTGCAAGATAGTATAAGGTCAGAAATTCATGAGAATATGGACTGTCAACGATGTAAAATAGATGTGTCAAGGGAGTCAGGTGATTCGGAAGATACAGGATCAGACCTTGCACCAAAAATAATTCCAGATGATTGTGAGACTTCAGATATTGGTGACTTTGCAAAGATTTCAGGGTGTTTACTCAAGCAGAGTTATTCAGAAAAGCAGTTAGGAACACCCATGGAAGAGGATTTACAAAGTTGGGCACATCACAAGTTTCCAGCTACAGTTCCAGATCTTGTACTTCAAGCTGCTGCTGGTGATGAGGTTTCTTTTGTATTTACAAATCAAGTTGATGGAAAACTTATTCCTGTTGAGTCTGCTGAAAGGAATGTGTTGGGCCAGAATGAGCGAGTAGTTAAAAAACAGATGCAATTTGGAAAATTGCTAGGTACAAAGACGTGCCAGTTACAAGAATCTACAGTTTCATCTCAGCAACAAGGAAACACTTTTCCAAGAACAGGACAACAATATGGTTCTATTCATCCCATTGAAAAGAGATCAAATTTACATCAGTTGTCCAATAAAATTTCCAAGTCATCCTGCATGGATCATTCAGATTCTAAGTTGAGCAGGCCGACTGTCTTTCATGTAGTTCAAAAGTCTCACTTACCAGTGAAAAGAATGTTTTCTGAGGCTGATGGTTTAGACGATGATTTTGCATAG___CTTTAAATATTGTACAAAGTGCTTTTAAATGAAAAGCCTTATCCAACAAAATAAAGATGGCAAGTTGCATTTTTTCCTCGTCTCAATC

Fln Alignment:

Contig667___MHVLARLLAHLFTKTDDRIVLVSNYTQTLDLFAQICRERKYPFLRLDGTTSIGKRRKLVQRFNDPSQNEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLTTGTIEEKVYQRQMSKEGLQKVVQQGQTDDPKFQVNSFSNEDLRDLFTLQDSIRSEIHENMDCQRCKIDVSRESGDSEDTGSDLAPKIIPDDCETSDIGDFAKISGCLLKQSYSEKQLGTPMEEDLQSWAHHKFPATVPDLVLQAAAGDEVSFVFTNQVDGKLIPVESAERNVLGQNERVVKKQMQFGKLLGTKTCQLQESTVSSQQQGNTFPRTGQQYGSIHPIEKRSNLHQLSNKISKSSCMDHSDSKLSRPTVFHVVQKSHLPVKRMFSE
D5AAS5_____________MHVLARLLAHLFTKTDDRIVLVSNYTQTLDLFAQICRERNYPFLRLDGTTSIGKRRKLVQRFNDPSQNEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLTTGTIEEKVYQRQMSKEGLQKVVQQGQTDDPKSQVNSFSIEDLRDLFTLQDSIRSEIHENMDCQRCKQDVLRELGDSENTGSDLAPKLIPDDYETSDIGDFAKISGCLLKQSYSEKQLGTPLEEDLQSWAHHKFPATVPDLVLQAAAGDDVSFVFTNQVDGKLVPIESAERKVLGQKGCVVKRQTQFGKLLGTKTCQLQESTVLSQQQVNSFPRTGQQSGSIDLIEKRSNLHRLSNKMSKSSCMGNSDFKLSRPNVSHVVQKSQLPVKRMFSE

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
2178		37		62	1.0
2406	25	75			0.996473
2409			25	75	0.996473
2411	25			75	0.996473
2430	83	16			0.994512
2431	16			83	0.994512
2552		20		80	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain