SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene664

Length: 2046 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene664
GCTGTGGTTCAGCGGGTCAGTTGTGGAGATTGACGGAGGGAAACAACCCATTGTCGACAGTTTAATCCAAACTGTTCGCTAAGGGCTACACACTACTCGGCTAGTGCTCCGATTTCATAAGTAACTATGGCGGGTGGGAAGGAGCGAAAAACTAGGCCCTCAGCAGCGCAGCGCCATCAGGGAGGAATTCAGTTTCAGAAATCCAAGGGACAGCATATCCTGAAGAATCCAATGCTAGTTCAGACTATTGTGCAAAAGGCAGGAATTAAGAGTACTGATATTGTGCTGGAGATAGGGCCTGGGACAGGTAACCTGACAATGAAATTACTAGAGGTAGCCAAGAAGGTAATAGCAGTCGAGTTGGATCCTCGTATGGTGCTGGAATTGCAGCGCAGGGTACAAGGCACAAGCAGTGCCATTCGGCTGCAGGTCATTCAAGGAGATGTTCTCAAATGTGAGCTGCCTTATTTTGATGTGTGTGTAGCAAATATTCCTTATCAGATATCTTCTCCACTTACATTTAAATTGTTATCACACAGACCAATTTTTAGATGTGCCATTATCATGTTCCAAAGAGAGTTTGCCATGAGACTTGTTGCAAATCCAGGAGATAATTTGTATTGCCGGCTTTCAGTGAATGCTCAATTGCTAGCTCGTGTTTCACATCTCTTGAAAGTTGGCAAGAACAATTTCAGGCCTCCTCCAAAAGTTGACTCCTCAGTTGTACGTATTGAACCCCGTAATCCTCTTCCTCCAATTAGTTTCAAGGAATGGGATGGCATGGTCCGTCTCTGTTTTAATCGTAAAAATAAGACTTTAGGGGCGATCTTTAGGCAAAAGGCTATCTTATCACTACTGGAAAAGAATTACAAGACATTTCAAGCATTGCAAGAAGCATGTCAGAAGTTAAATGAGTCTAGTTTTGGTGATGTGTCTATTTTGGGTGACACTAGCAATGATGTTAGTATGGACATTGATGCTGGGGAAGATCAAGACATGGATGTTGATGATGCTGGCATTCAGGAAGGGGCTTCTCAGTTTAAAGATAAAGTCTTAAATATCTTAAAAGAGGGGGGTTTTGAGGATAAAAGATCTTCCAAGCTTGCTCAGGATGATTTTTTGTATCTGTTATCCCTCTTTAACAAGGCCGGGATACATTTTTCTTGATTCATGTCTGGTGGGTTTTAAGTTTTAACCCACACAGAAACGGTTCTTGGAAATGTATGTTAATAGGAATCCCGAATTTTCCTCCGTCCTGCGGGATTTTTACTTTGGAGAGAAAGCTGTGAAAGCTTATCGTTGACAAGAAGACTTGCAGTGAGTGTTTTTCAGTCAAAAGGATTCAACGAAAGTTGTTAGCAGCTTCAATCAGTATGACATTTCATTCCCTGTCTTTATTTCTGAAGTTTTTTGGCACATGCAAGCAGAAAATGTAGCACTTTTTGGGTTCCTTGGCATAAAAGAAGAGTGCTTGTAACAGGGGCCAGCTAACAGTTCTGAGAAGTAGGTTTTAAAACAGGAGCGATTCAACAACATTGCTTTTAACGGAAGGTGCATCTCACCCTCCTCCGTTTCTCCACTGCTTTTTAATGGATAATAATTAATTCAACTCATTTGATTAGCATGAGAAAGGCAAATAGCCAATTTTGATTTGTAATTAGCACACCACAGACGTGATTATGTTGCCAAACTTGTACTTGTACTTGACAGAGTTCAGGGTTGGGGCAAGAGTTCAGGGTCCCCTCTGAGCACATACTTGCCTCAGAGCAAACGCCTCATCTTTGCAATTGCCAAACTTGTACTTGTACTTGTACTTGACAGAGTTCAGGGTTCCTCTGGGGCAGGAGTTCAGGGTCCCTCTGGGCACATACTTACCTCAGAGCAAATGCCTCATCTTTGCAAGCCATAAACAGAGTTATCCTCTTATTTGAATATATGTTATGGTGTGAAATGAGTAGTTTAACTCCTATATAATGGCATATTGCCCTTACCAATACATGTAAGAATGGATGTTATTAATGGTCTGAAATGAGTAGTTTAAGTCCT

Ace file of the UniGene sp_v3.0_unigene664 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	dimethyladenosine transferase [Arabidopsis thaliana] gb\|AAC62868.1\| putative dimethyladenosine transferase [Arabidopsis thaliana] gb\|AAK64053.1\| putative dimethyladenosine transferase [Arabidopsis thaliana] gb\|AAM44912.1\| putative dimethyladenosine transf	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal RNA adenine methylase transferase	IPR001737	-	0.0	-
Sma3	Ribosomal RNA adenine dimethylase	IPR011530	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G47420.1	Ribosomal RNA adenine dimethylase family protein chr2:19457574-19458777 FORWARD LENGTH=353	69%
RefSeq	Arabidopsis thaliana	NP_182264.1	dimethyladenosine transferase [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002320304.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLX1

Fln msg:

Fln protein: MAGGKERKTRPSAAQRHQGGIQFQKSKGQHILKNPMLVQTIVQKAGIKSTDIVLEIGPGTGNLTMKLLEVAKKVIAVELDPRMVLELQRRVQGTSSAIRLQVIQGDVLKCELPYFDVCVANIPYQISSPLTFKLLSHRPIFRCAIIMFQREFAMRLVANPGDNLYCRLSVNAQLLARVSHLLKVGKNNFRPPPKVDSSVVRIEPRNPLPPISFKEWDGMVRLCFNRKNKTLGAIFRQKAILSLLEKNYKTFQALQEACQKLNESSFGDVSILGDTSNDVSMDIDAGEDQDMDVDDAGIQEGASQFKDKVLNILKEGGFEDKRSSKLAQDDFLYLLSLFNKAGIHFS*

Protein Length: 348

Fln nts: GCTGTGGTTCAGCGGGTCAGTTGTGGAGATTGACGGAGGGAAACAACCCATTGTCGACAGTTTAATCCAAACTGTTCGCTAAGGGCTACACACTACTCGGCTAGTGCTCCGATTTCATAAGTAACT_-_ATGGCGGGTGGGAAGGAGCGAAAAACTAGGCCCTCAGCAGCGCAGCGCCATCAGGGAGGAATTCAGTTTCAGAAATCCAAGGGACAGCATATCCTGAAGAATCCAATGCTAGTTCAGACTATTGTGCAAAAGGCAGGAATTAAGAGTACTGATATTGTGCTGGAGATAGGGCCTGGGACAGGTAACCTGACAATGAAATTACTAGAGGTAGCCAAGAAGGTAATAGCAGTCGAGTTGGATCCTCGTATGGTGCTGGAATTGCAGCGCAGGGTACAAGGCACAAGCAGTGCCATTCGGCTGCAGGTCATTCAAGGAGATGTTCTCAAATGTGAGCTGCCTTATTTTGATGTGTGTGTAGCAAATATTCCTTATCAGATATCTTCTCCACTTACATTTAAATTGTTATCACACAGACCAATTTTTAGATGTGCCATTATCATGTTCCAAAGAGAGTTTGCCATGAGACTTGTTGCAAATCCAGGAGATAATTTGTATTGCCGGCTTTCAGTGAATGCTCAATTGCTAGCTCGTGTTTCACATCTCTTGAAAGTTGGCAAGAACAATTTCAGGCCTCCTCCAAAAGTTGACTCCTCAGTTGTACGTATTGAACCCCGTAATCCTCTTCCTCCAATTAGTTTCAAGGAATGGGATGGCATGGTCCGTCTCTGTTTTAATCGTAAAAATAAGACTTTAGGGGCGATCTTTAGGCAAAAGGCTATCTTATCACTACTGGAAAAGAATTACAAGACATTTCAAGCATTGCAAGAAGCATGTCAGAAGTTAAATGAGTCTAGTTTTGGTGATGTGTCTATTTTGGGTGACACTAGCAATGATGTTAGTATGGACATTGATGCTGGGGAAGATCAAGACATGGATGTTGATGATGCTGGCATTCAGGAAGGGGCTTCTCAGTTTAAAGATAAAGTCTTAAATATCTTAAAAGAGGGGGGTTTTGAGGATAAAAGATCTTCCAAGCTTGCTCAGGATGATTTTTTGTATCTGTTATCCCTCTTTAACAAGGCCGGGATACATTTTTCTTGA___TTCATGTCTGGTGGGTTTTAAGTTTTAACCCACACAGAAACGGTTCTTGGAAATGTATGTTAATAGGAATCCCGAATTTTCCTCCGTCCTGCGGGATTTTTACTTTGGAGAGAAAGCTGTGAAAGCTTATCGTTGACAAGAAGACTTGCAGTGAGTGTTTTTCAGTCAAAAGGATTCAACGAAAGTTGTTAGCAGCTTCAATCAGTATGACATTTCATTCCCTGTCTTTATTTCTGAAGTTTTTTGGCACATGCAAGCAGAAAATGTAGCACTTTTTGGGTTCCTTGGCATAAAAGAAGAGTGCTTGTAACAGGGGCCAGCTAACAGTTCTGAGAAGTAGGTTTTAAAACAGGAGCGATTCAACAACATTGCTTTTAACGGAAGGTGCATCTCACCCTCCTCCGTTTCTCCACTGCTTTTTAATGGATAATAATTAATTCAACTCATTTGATTAGCATGAGAAAGGCAAATAGCCAATTTTGATTTGTAATTAGCACACCACAGACGTGATTATGTTGCCAAACTTGTACTTGTACTTGACAGAGTTCAGGGTTGGGGCAAGAGTTCAGGGTCCCCTCTGAGCACATACTTGCCTCAGAGCAAACGCCTCATCTTTGCAATTGCCAAACTTGTACTTGTACTTGTACTTGACAGAGTTCAGGGTTCCTCTGGGGCAGGAGTTCAGGGTCCCTCTGGGCACATACTTACCTCAGAGCAAATGCCTCATCTTTGCAAGCCATAAACAGAGTTATCCTCTTATTTGAATATATGTTATGGTGTGAAATGAGTAGTTTAACTCCTATATAATGGCATATTGCCCTTACCAATACATGTAAGAATGGATGTTATTAATGGTCTGAAATGAGTAGTTTAAGTCCT

Fln Alignment:

Contig664___MAGGKERKTRPSAAQRHQGGIQFQKSKGQHILKNPMLVQTIVQKAGIKSTDIVLEIGPGTGNLTMKLLEVAKKVIAVELDPRMVLELQRRVQGTSSAIRLQVIQGDVLKCELPYFDVCVANIPYQISSPLTFKLLSHRPIFRCAIIMFQREFAMRLVANPGDNLYCRLSVNAQLLARVSHLLKVGKNNFRPPPKVDSSVVRIEPRNPLPPISFKEWDGMVRLCFNRKNKTLGAIFRQKAILSLLEKNYKTFQALQEACQKLNESSFGDVSILGDTSNDVSMDIDAGEDQDMDVDDAGIQEGASQFKDKVLNILKEGGFEDKRSSKLAQDDFLYLLSLFNKAGIHFS
B8LLX1_____________MAGGKERKTRASAAQRHQGGIQFQKSKGQHILKNPMLVQTIVQKAGIKSTDIVLEIGPGTGNLTMKLLEVAKKVIAVELDPRMVLELQRRVQGTSSAIRLQVIQGDVLKSELPYFDVCVANIPYQISSPLTFKLLSHRPIFRCAIIMFQREFAMRLVAKPGDNLYCRLSVNTQLLARVSHLLKVGKNNFRPPPKVDSSVVRIEPRNPLPPISFKEWDGMVRLCFNRKNKTLGAIFRQKAILSLLEKNYKTFQALQEAQQKSNESSFGDVSILGDTSNDVSMDIDAGEDQDMDVDDADMQEGASQFKDKVLNILKEGGFEDKRSSKLAQDDFLYLLSLFNKAGIHFN

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
144		75		25	0.996473
217		25		75	0.996473
281	25			75	0.996473
282	25	75			0.996473
467	16		83		0.999991
577		88	11		0.923564
593		85		14	0.993533
600		50		50	1.0
611	16	83			0.994512
616			16	83	0.994512
617		16		83	0.994512
618		16		83	0.994512
619	16			83	0.994512
620	16	83			0.994512
621			16	83	0.994512
625		16		83	0.994512
626	16		83		0.994512
629		16		83	0.994512
661	16		83		0.994512
662	83	16			0.994512
665			83	16	0.994512
671		20		80	0.995493
688	14		71	14	0.984337
689	14		14		0.984337
702	14		85		0.993533
720	83		16		0.994512
785	75	25			0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
230	252	CAAGTA CAAGTA CAAGTA CAAGT	23

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain