SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene657

Length: 3163 nt

UniGene Fasta

>sp_v3.0_unigene657
AGAGCATTGCAGTGGTGGAGAGGGTATGAAGGAGGAGCAAGGAATGGAGGATCAACACCGATTTCCTGCATTCCCTTTCAAACCTTATACCATTCAATTAAATTTCATGAACACGCTTTACAATGCTCTGGACAAGGGCGGCGTCGCCATTCTCGAAAGCCCCACAGGCACAGGGAAAACACTCAGTTTAATCTGTAGTACACTGCAATGGTTAATTGATGAAAAATTGCGAGCCCCAGTAGAACAGTCGAAGCAACCATCTGACTGTGCTGATGATGAACCAGACTGGATGAGAGATTTTGCTGCAAAGAAAGAGGAGAAACAGATCAAATGCACTACAGATAAGAAAGAGAGATGGAAACCCTCTAGGAGGATAAAATCTTCTATGGTTGACACGCTTTTCTTTGGAGACAAGAATCTGGATGAAAATAGAATAGAAGAAAAAAGTGCTGGAAGGGCCTCTAATCTCTCAGAAAAGTTTGATGATGAATCAGATTATTTGATTGAGGAATATGAGAGTGGAGAGGATTGTGAAGATAGCAAGAACGGGAAAAGAAAATCTGGCTATATGTCTTCTAGCAGCAATGAAGACTCAGGAGATGAGGGTGTGGAGGAAGAGCCTATAAAGGTTTTCTTTTGCAGTCGGACTCATTCACAGCTGTCCCAGTTTGTCAAAGAGCTACAACGCACAACTTTTGCTTCGTCCTTGAAAGTTGCCTGTTTAGGCTCTAGGAAGACATTATGCATCAATCCAGATGTTTCAAAGCTTGGAAATTCAACTCGGATCAATGAGCGTTGCTTGGAATTACAAAAGAATAAAAATTGCAAAAGATCTACGAGCAAGAAGGTACTGGATGGAGAGGCAAAGATTAAGAAAACAATAACGTCTGGATGCCCCTTCTTAAGGAAGCAGAAACTGCAGAAACAGTTCAAAGAAGAAGTTAATCAGCAGGCTTTAGATATTGAGGATCTTCTTCACCTGGGACGCAAACTTGGCACCTGTCCTTATTATGGTTCTCGAGCTCTGATACCATCAGCTAATCTTGTGGTACTGCCTTACCAGTCTTTGCTTCTCAAGTCTGCTCGCGAATCTCTTGGAGTGAACTTGAAGGATAGCATTGTCATTATAGATGAGGCACACAATCTAGTTGATGCACTCACTAATATGCATAACTCACAAATCACAACCTCACAGCTTCAACTTGCGAACTCTCACCTTAAAGGTTATCTGGAAAGGTTCAGGAACTGCTTGGGAGCTGGCAATAGACGGTATATACAAATGCTTATGGTGCTTATCCAAGCATTTCTGCAATGCTTATCAGCCAATCAACAGAAGGATATGTGTGGTCCATCTTCAGATATTCATGTTAATGGTATAATTTTTGAATTGGGTGAAAAGGAGACAAGAAATGATGCAGTTATGACTATCAATGAGTTCTTATTTTCACTTGATATTGACAATATCAACTTGGTTAAGTTGCAGCGTTACATGAAAGAAAGCAATATCATTCATAAGGTAAGCAGCTATGGGGAGAAACATCTTCTTCCAGAGGGTGAGCTTTTGCAATCTCAGCATACTGCAGGTTGGAATGTTGGAGTGGGAAGCAGTGCACTGTCTAGTTTTCACACGTTGGCAGATTTTCTTCTTGCATTAACAAATGCTGACGGTGATGGAAGAATTATTGTTTCAAAGACAACCACAGCTAGTCTAGAGGAACATAAAGAAGGATCCCTTAAGTTTGTGATGCTTGATGCAGAGAAGCTTTTTGCAGAGATTGTAGATCAAGCCCACACTGTTGTTCTGGCAGGTGGAACACTACAGCCAGTAGACGAGATAAAGGAACGACTATTCCCTCACCTACAACCAGATCGACTGCACTTATTTTCTTGTGGCCATATTGTTCCACCTGAGAGCATTTTACCTATTGCCATCTCACGTGGACCTACAGGAAGATCTTTTGATTTTACTTATCAGTCCCGTAGCTCCCCCCTTATGATGGAGGAGATTGGACGGCTGCTTTGTAATATAGCATCAGTTGTTCCCGAGGGGATTGTTGTATTCTTTCCATCTTTTGAATATGAGAGCCAAATTTATGCTGCATGGAAAAAATCTGGGATCCTGGCCACCCTTCAAAAGAAGAAACATGTCTTTCGAGAACCTCGGAATAATGCAGCTGTGGAGCTTACTCTACAGGAATATAGAGCTACCATATTCTCATCTTCCACCAAGAGCACAAAAGAAGATAGATCAGGACAAGGTGCCATTCTTCTGGCAGTAGTAGGTGGCAAAATTTCAGAAGGGATCAATTTCAGCGACGGAATGGGTCGATGTGTGGTGATGGTAGGACTTCCCTATCCATGCCCATCTGACCCAGAGTTGATTGAGCGCATTAAACATATTGATGGATTGGGATCAAGCTCCATGAGGGACAACCTATTACCAACCAGTCAAATTAAAAGTGAGACAGCTGTTGGCCCATCAGGATTTAACATTTTACGTTGTTGCAAGCAAAGGGGAAGGGAATATTATGAAAATCTCTGCATGAAAGCAGTGAATCAATCTATAGGTCGAGCAATCAGGCATATTGGAGATTATGCTGCTATATTGCTAGTTGATGCCCGCTATGCATCAATAGTGGAATCTAATTCATTCAAGGGAAATTTCTCTACACCAGTTTCTAAGCTCCCCACTTGGATCAAGGAGCGTCTTGTTACTGTTACAGGTAATTTTGGAGAGGTCCAGAGGCTGCTTCACGAGTTCTTCAAGTATAATCAACGGCAGACAACACAAAGAACATGCTCTAAGTGAGGCCATTTCAAAACTCGAAAGGAACATGAAAATTGCAATTATTGAAACAGTGCCTGCAAAAAGATGCAAGACATCTTCAAAGATGTCTTCTGCTATGGGATTTGTCAGTTGATAATAGTCTTCTTATCCGACCAAAGTGTTAATGGTTATTTGTGAAGTGAGCTGCATGCCTAAAAGTATCATATATGATTCATTTTTTCCCTGTTATATTAAATACCCCATCAATGTACCTCCATTGGCAATGGCTTCTGCGGACTTATCATTGGACGTGTGTTGGAAATTGCTCTCAAATATCCTGTAATATGAATGAATAGGATCAAATTCCTCTCAGACCACATTTGTGCATTTTCTTAT

Ace file of the UniGene sp_v3.0_unigene657

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	probable ATP-dependent RNA helicase DDX11 [Danio rerio] gb\|AAH85645.1\| Zgc:92172 [Danio rerio]	-	-	0.0	37%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	57%

Source	Gene names
Sma3	At1g79890; B1003C08.1; CHLREDRAFT_113235; F19K16.15; GSVIVT00034393001; Os05g0219800; OsI_18924; OsJ_17579; PHYPADRAFT_226571; POPTRDRAFT_797535; RCOM_1494460; RCOM_1494470; RCOM_1494480; VITISV_017477;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	ATP-dependent DNA helicase activity	GO:0004003	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	nucleobase-containing compound metabolic process	GO:0006139	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Helicase-like, DEXD box c2 type	IPR006554	-	-
Sma3	ATP-dependent helicase, C-terminal	IPR006555	-	-
Sma3	DEAD2	IPR010614	-	-
Sma3	DNA helicase (DNA repair), Rad3 type	IPR013020	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type	IPR014013	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G79890.1	RAD3-like DNA-binding helicase protein chr1:30048655-30052203 FORWARD LENGTH=882	51%
RefSeq	Arabidopsis thaliana	NP_178107.1	chromosome transmission fidelity protein 1 [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002299703.1	predicted protein [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6HYE8

Fln msg:

Fln protein: MKEEQGMEDQHRFPAFPFKPYTIQLNFMNTLYNALDKGGVAILESPTGTGKTLSLICSTLQWLIDEKLRAPVEQSKQPSDCADDEPDWMRDFAAKKEEKQIKCTTDKKERWKPSRRIKSSMVDTLFFGDKNLDENRIEEKSAGRASNLSEKFDDESDYLIEEYESGEDCEDSKNGKRKSGYMSSSSNEDSGDEGVEEEPIKVFFCSRTHSQLSQFVKELQRTTFASSLKVACLGSRKTLCINPDVSKLGNSTRINERCLELQKNKNCKRSTSKKVLDGEAKIKKTITSGCPFLRKQKLQKQFKEEVNQQALDIEDLLHLGRKLGTCPYYGSRALIPSANLVVLPYQSLLLKSARESLGVNLKDSIVIIDEAHNLVDALTNMHNSQITTSQLQLANSHLKGYLERFRNCLGAGNRRYIQMLMVLIQAFLQCLSANQQKDMCGPSSDIHVNGIIFELGEKETRNDAVMTINEFLFSLDIDNINLVKLQRYMKESNIIHKVSSYGEKHLLPEGELLQSQHTAGWNVGVGSSALSSFHTLADFLLALTNADGDGRIIVSKTTTASLEEHKEGSLKFVMLDAEKLFAEIVDQAHTVVLAGGTLQPVDEIKERLFPHLQPDRLHLFSCGHIVPPESILPIAISRGPTGRSFDFTYQSRSSPLMMEEIGRLLCNIASVVPEGIVVFFPSFEYESQIYAAWKKSGILATLQKKKHVFREPRNNAAVELTLQEYRATIFSSSTKSTKEDRSGQGAILLAVVGGKISEGINFSDGMGRCVVMVGLPYPCPSDPELIERIKHIDGLGSSSMRDNLLPTSQIKSETAVGPSGFNILRCCKQRGREYYENLCMKAVNQSIGRAIRHIGDYAAILLVDARYASIVESNSFKGNFSTPVSKLPTWIKERLVTVTGNFGEVQRLLHEFFKYNQRQTTQRTCSK*

Protein Length: 929

Fln nts: AGAGCATTGCAGTGGTGGAGAGGGT_-_ATGAAGGAGGAGCAAGGAATGGAGGATCAACACCGATTTCCTGCATTCCCTTTCAAACCTTATACCATTCAATTAAATTTCATGAACACGCTTTACAATGCTCTGGACAAGGGCGGCGTCGCCATTCTCGAAAGCCCCACAGGCACAGGGAAAACACTCAGTTTAATCTGTAGTACACTGCAATGGTTAATTGATGAAAAATTGCGAGCCCCAGTAGAACAGTCGAAGCAACCATCTGACTGTGCTGATGATGAACCAGACTGGATGAGAGATTTTGCTGCAAAGAAAGAGGAGAAACAGATCAAATGCACTACAGATAAGAAAGAGAGATGGAAACCCTCTAGGAGGATAAAATCTTCTATGGTTGACACGCTTTTCTTTGGAGACAAGAATCTGGATGAAAATAGAATAGAAGAAAAAAGTGCTGGAAGGGCCTCTAATCTCTCAGAAAAGTTTGATGATGAATCAGATTATTTGATTGAGGAATATGAGAGTGGAGAGGATTGTGAAGATAGCAAGAACGGGAAAAGAAAATCTGGCTATATGTCTTCTAGCAGCAATGAAGACTCAGGAGATGAGGGTGTGGAGGAAGAGCCTATAAAGGTTTTCTTTTGCAGTCGGACTCATTCACAGCTGTCCCAGTTTGTCAAAGAGCTACAACGCACAACTTTTGCTTCGTCCTTGAAAGTTGCCTGTTTAGGCTCTAGGAAGACATTATGCATCAATCCAGATGTTTCAAAGCTTGGAAATTCAACTCGGATCAATGAGCGTTGCTTGGAATTACAAAAGAATAAAAATTGCAAAAGATCTACGAGCAAGAAGGTACTGGATGGAGAGGCAAAGATTAAGAAAACAATAACGTCTGGATGCCCCTTCTTAAGGAAGCAGAAACTGCAGAAACAGTTCAAAGAAGAAGTTAATCAGCAGGCTTTAGATATTGAGGATCTTCTTCACCTGGGACGCAAACTTGGCACCTGTCCTTATTATGGTTCTCGAGCTCTGATACCATCAGCTAATCTTGTGGTACTGCCTTACCAGTCTTTGCTTCTCAAGTCTGCTCGCGAATCTCTTGGAGTGAACTTGAAGGATAGCATTGTCATTATAGATGAGGCACACAATCTAGTTGATGCACTCACTAATATGCATAACTCACAAATCACAACCTCACAGCTTCAACTTGCGAACTCTCACCTTAAAGGTTATCTGGAAAGGTTCAGGAACTGCTTGGGAGCTGGCAATAGACGGTATATACAAATGCTTATGGTGCTTATCCAAGCATTTCTGCAATGCTTATCAGCCAATCAACAGAAGGATATGTGTGGTCCATCTTCAGATATTCATGTTAATGGTATAATTTTTGAATTGGGTGAAAAGGAGACAAGAAATGATGCAGTTATGACTATCAATGAGTTCTTATTTTCACTTGATATTGACAATATCAACTTGGTTAAGTTGCAGCGTTACATGAAAGAAAGCAATATCATTCATAAGGTAAGCAGCTATGGGGAGAAACATCTTCTTCCAGAGGGTGAGCTTTTGCAATCTCAGCATACTGCAGGTTGGAATGTTGGAGTGGGAAGCAGTGCACTGTCTAGTTTTCACACGTTGGCAGATTTTCTTCTTGCATTAACAAATGCTGACGGTGATGGAAGAATTATTGTTTCAAAGACAACCACAGCTAGTCTAGAGGAACATAAAGAAGGATCCCTTAAGTTTGTGATGCTTGATGCAGAGAAGCTTTTTGCAGAGATTGTAGATCAAGCCCACACTGTTGTTCTGGCAGGTGGAACACTACAGCCAGTAGACGAGATAAAGGAACGACTATTCCCTCACCTACAACCAGATCGACTGCACTTATTTTCTTGTGGCCATATTGTTCCACCTGAGAGCATTTTACCTATTGCCATCTCACGTGGACCTACAGGAAGATCTTTTGATTTTACTTATCAGTCCCGTAGCTCCCCCCTTATGATGGAGGAGATTGGACGGCTGCTTTGTAATATAGCATCAGTTGTTCCCGAGGGGATTGTTGTATTCTTTCCATCTTTTGAATATGAGAGCCAAATTTATGCTGCATGGAAAAAATCTGGGATCCTGGCCACCCTTCAAAAGAAGAAACATGTCTTTCGAGAACCTCGGAATAATGCAGCTGTGGAGCTTACTCTACAGGAATATAGAGCTACCATATTCTCATCTTCCACCAAGAGCACAAAAGAAGATAGATCAGGACAAGGTGCCATTCTTCTGGCAGTAGTAGGTGGCAAAATTTCAGAAGGGATCAATTTCAGCGACGGAATGGGTCGATGTGTGGTGATGGTAGGACTTCCCTATCCATGCCCATCTGACCCAGAGTTGATTGAGCGCATTAAACATATTGATGGATTGGGATCAAGCTCCATGAGGGACAACCTATTACCAACCAGTCAAATTAAAAGTGAGACAGCTGTTGGCCCATCAGGATTTAACATTTTACGTTGTTGCAAGCAAAGGGGAAGGGAATATTATGAAAATCTCTGCATGAAAGCAGTGAATCAATCTATAGGTCGAGCAATCAGGCATATTGGAGATTATGCTGCTATATTGCTAGTTGATGCCCGCTATGCATCAATAGTGGAATCTAATTCATTCAAGGGAAATTTCTCTACACCAGTTTCTAAGCTCCCCACTTGGATCAAGGAGCGTCTTGTTACTGTTACAGGTAATTTTGGAGAGGTCCAGAGGCTGCTTCACGAGTTCTTCAAGTATAATCAACGGCAGACAACACAAAGAACATGCTCTAAGTGA___GGCCATTTCAAAACTCGAAAGGAACATGAAAATTGCAATTATTGAAACAGTGCCTGCAAAAAGATGCAAGACATCTTCAAAGATGTCTTCTGCTATGGGATTTGTCAGTTGATAATAGTCTTCTTATCCGACCAAAGTGTTAATGGTTATTTGTGAAGTGAGCTGCATGCCTAAAAGTATCATATATGATTCATTTTTTCCCTGTTATATTAAATACCCCATCAATGTACCTCCATTGGCAATGGCTTCTGCGGACTTATCATTGGACGTGTGTTGGAAATTGCTCTCAAATATCCTGTAATATGAATGAATAGGATCAAATTCCTCTCAGACCACATTTGTGCATTTTCTTAT

Fln Alignment:

Contig657___RFPAFPFKPYTIQLNFMNTLYNALDKGGVAILESPTGTGKTLSLICSTLQWLIDEK--LRAPVEQSKQPSDC--ADDEPDWMRDFAAKK----EEKQIKCTTDKKERWKPSRRIKSSMVDTLFFGDKNLDENRIEEKSAGRASNLSE----KFDDESDYLIEEYESGEDCEDSKNGK--RKSGYMXXXXXXXXXXXXXXXXP---IKVFFCSRTHSQLSQFVKELQRTTFASSLKVACLGSRKTLCINPDVSKLGNSTRINERCLELQKNKNCKRSTSK-KVLDGEAKIKKT-ITSGCPXXXXXXXXXXXXEEVNQQ-ALDIEDLLHLGRKLGTCPYYGSRALIPSANLVVLPYQSLLLKSARESLGVNLKDSIVIIDEAHNLVDALTNMHNSQITTSQLQLANSHLKGYLERFRNCLGAGNRRYIQMLMVLIQAFLQCLSANQQKDMCGPSSDIHVNGIIFELGEKETRNDAVMTINEFLFSLDIDNINLVKLQRYMKESNIIHKVSSYGEK-HLLPEGELLQSQHTAGWNVGVGSSALSSFHTLADFLLALTNADGDGRIIVSKTTTASLEEHKEGSLKFVMLDAEKLFAEIVDQAHTVVLAGGTLQPVDEIKERLFPHLQPDRLHLFSCGHIVPPESILPIAISRGPTGRSFDFTYQSRSSPLMMEEIGRLLCNIASVVPEGIVVFFPSFEYESQIYAAWKKSGILATLQKKKHVFREPRNNAAVELTLQEYRATIFSSSTKSTKEDRSGQ-GAILLAVVGGKISEGINFSDGMGRCVVMVGLPYPCPSDPELIERIKHIDGLG---SSSMRDNLLPTSQIKSETAVGPSGFNILRCCKQRGREYYENLCMKAVNQSIGRAIRHIGDYAAILLVDARYASIVESNSFKGNFSTPVSKLPTWIKERLVTVTGNFGEVQRLLHEFFKYNQRQTTQ
F6HYE8_____________KFPAFPYEPYSIQIDFMKALYRSLNKGGVSMLESPTGTGKTLSIICSALQWLVDRKQQLKSEANQTQTPGGGTGSDDEPDWMKNFVANKDPAVEDKMKKKLRFGKE--KPDKGRNQGSCRNLL--SPNLVEEGIHEKKD--SENLGEINGVELNDE-EFLVEEYESEEE-EGVGVGKSKRKAGGVSINSSSDEEEEDDNEEDGEGLKIYFCSRTHSQLSQFVKELRKTIFGNEMKVVCLGSRKISCINEEVLKLGNSTRINERCLELQQNK--KKEVSKLKNLGSEGRIRRTKASSGCPMLRNHKLQKQFRSEISQEGALDIEDLVHLGRRMGTCPYYGSRSIIPAADLVVLPYQSLLSKSSRESLGLNLKNNIVIIDEAHNLADSLISMYDAKITSSQLEHVHSHIKQYLQRFRNFLGPGNRRYIQTLLVVTRAFLQILLNGKDTSLVDPGHDAEK-----AFGAKSA-SDSSMAINDFLFSLNIDNINLVKLLHYIKESNIIHKVSGYGDKVAYLRKGSALND----GGESNEEGSTLSGFRAFVDMLQSLTNNDGDGKIIISRAKQACSGQ-QGGYLKYVMLTGEKIFSEIVDQAHAVILAGGTLQPIEETRERLFPWLTSDQFHFFSCSHIIPPESILPVALSHGPSGQSFDFSYSSRSSSIMIEELGLLLCNLVTVVPEGIVVFFSSFDYEGQVHDAWKASGILERIMKKKCVFREPRKNTDVEFVLKEYKEAIDKSSDRNQKEDPVPQNGAILLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSDIELLERVKYIEGLGVSISSRSTKFSVGNEYFSGDVQV---GFDILRSCKHRGKEYYENLCMKAVNQSIGRAIRHINDYAAILLVDARYA----SDPLKRSFSHPTNKLPQWIKDCLVPVTGKYGEAHRLLHQFFKFNKKRGCQ

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
762		66		33	0.997452
2511	75		25		0.996473
2537		85	14		0.993533
2538			14	85	0.993533
2539		85	14		0.993533
2599		12		87	0.992554
2623		87		12	0.992554
2675	33		66		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain