SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene640

Length: 1987 nt

UniGene Fasta

>sp_v3.0_unigene640
TGATACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGGTATAAGGCGGAGAAAGCCTCGAGGTTTTCTACATTACCCTTATTCTGAATCTGTGAGGCTTCTCTGTCAGGTTCAGTTCGTATCTTAGGGTTTTTTTTTTCTTTCGATTTCCTGTGTCGCAAGGTTTTAGATCGCCAAGATGCGTGAAATCCTGCACATTCAGGGCGGCCAATGCGGCAACCAGATCGGTGCCAAGTTCTGGGAAGTTGTCTGTGATGAGCACGGAATCGATCCCACTGGGAGATACCAGGGCACTTCAGATCTACAGCTCGAAAGGGTTAATGTTTACTACAATGAGGCGAGCTGTGGGCGATTTGTTCCCCGTGCTGTGCTTATGGATCTGGAGCCTGGGACCATGGACAGTGTGAGGACCGGGCCTTATGGCCAGGTCTTTAGGCCTGATAACTTCGTTTTTGGCCAGTCCGGGGCTGGGAACAACTGGGCCAAGGGCCATTACACTGAGGGGGCCGAGCTCATTGATTCCGTTCTTGATGTCGTCAGGAAGGAGGCCGAGAACTGTGATTGCCTTCAAGGGTTTCAAGTGTGTCACTCTTTGGGGGGAGGCACTGGATCTGGAATGGGAACCCTCTTGATCTCCAAGATCCGAGAGGAATACCCTGATAGAATGATGCTCACTTTCTCTGTTTTCCCATCTCCCAAGGTGTCTGATACCGTGGTGGAGCCTTACAATGCTACACTTTCTGTGCATCAGCTGGTGGAGAATGCCGACGAGTGTATGGTGCTGGACAATGAGGCCCTCTACGACATCTGCTTCAGGACTCTCAAGCTCACGACACCTAGCTTTGGTGATTTGAACCATTTGATATCTGCAACAATGAGTGGAGTCACCTGCTGCCTGAGGTTTCCTGGCCAGTTGAACTCAGATCTGAGGAAGCTGGCAGTGAATCTGATCCCTTTCCCCCGTCTTCACTTTTTTATGGTGGGATTTGCCCCTTTGACCTCTCGTGGTTCACAGCAATACAGAGCCCTTACAGTTCCGGAGCTCACACAACAGATGTGGGATTCCAAGAACATGATGTGCGCTGCAGATCCACGCCATGGCAGGTATCTGACGGCATCTGCTATGTTCAGGGGCAAGATGAGTACCAAAGAGGTGGATGAGCAAATGATGAATGTTCAGAACAAGAATTCCTCCTACTTTGTGGAATGGATCCCTAATAATGTGAAATCCAGTGCATGTGATATTCCACCAAAAGGCCTGTCTATGTCGTCAACATTCATTGGTAACTCGACATCCATTCAGGAGATGTTCAGGAGAGTAAATGAGAAGGACACCACTAAAGCAAAGAGTAACATGAATGATTTGGTTTCTGAGTACATGCAGTACCAGGATGCCAGCGCAGAGGATGATGAATACTATGATGATGAAGAATCAGCTCAGGAGAGCTAGATATCGTTAGTTATTAGCTCACCATCAACAACAGCTAGTTGTTTCAACGCCTAGTAGTTGTTTGTGTGGATTTCATTTACATTTCTTGTTCTTTCATAGTCTGCTCTGCTCTACTGGAGGTTCAAGATTTGAATTCATAAGCTTTGTATACAACTCCATATGCTTTTGCTTTTGTTCAGTAGATGAATCATGACAATATTTTGAATTTGTTCGTCTGATATATAGCTACACTATATGCAGCACTGGCAGGTTTTTAATTTTGTTGGTCAGATATAATATTGGAAGACCATATTTTTCATTTTTACTACCTTGTGGCAACTGTGATTTTTACTACTTTGTGATAACTGTCCATGTGCTGATTATGGTTGTTTGTGTTGTTTGCGAGTTTCCTAGTGTCCGTTGTTCTAATTGTTAAAATAAGATTGTCTATCTTATGTTGTAGAGTTGGCATGGATTTGTATCATCTGGTAGTTATTGGGGACATTTAGAGAGATTATAATGTTAAATGTTGCTGGATTCTGTATATCTG

Ace file of the UniGene sp_v3.0_unigene640

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tubulin beta-4 chain n=11 Tax=Eukaryota RepID=TBB4_ORYSJ	-	-	0.0	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	Beta-tubulin	-	-	2.28e-13	-

Source	Gene names
Sma3	At1g20010; At1g75780/T4O12_29; At2g29550; At4g20890; At5g12250; At5g12250/MXC9_21; At5g23860; BTub-1; BTub1; F16P2.7; GSVIVT00000394001; GSVIVT00000417001; GSVIVT00009147001; GSVIVT00014415001; GSVIVT00017326001; GSVIVT00017820001; GSVIVT00021443001; GSVI

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	protein polymerization	GO:0051258	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tubulin	IPR000217	-	-
Sma3	Beta tubulin	IPR002453	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G12250.1	TUB6 beta-6 tubulin chr5:3961317-3962971 REVERSE LENGTH=449	90%
RefSeq	Arabidopsis thaliana	NP_196786.1	tubulin beta-6 chain [Arabidopsis thaliana]	90%
RefSeq	Populus trichocarpa	XP_002322609.1	tubulin, beta chain [Populus trichocarpa]	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABQ9

Fln msg: your sequence is shorter than subject: 424 - 445

Fln protein: MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYQGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSACDIPPKGLSMSSTFIGNSTSIQEMFRRVNEKDTTKAKSNMNDLVSEYMQYQDASAEDDEYYDDEESAQES*

Protein Length: 425

Fln nts: TGATACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGGTATAAGGCGGAGAAAGCCTCGAGGTTTTCTACATTACCCTTATTCTGAATCTGTGAGGCTTCTCTGTCAGGTTCAGTTCGTATCTTAGGGTTTTTTTTTTCTTTCGATTTCCTGTGTCGCAAGGTTTTAGATCGCCAAG_-_ATGCGTGAAATCCTGCACATTCAGGGCGGCCAATGCGGCAACCAGATCGGTGCCAAGTTCTGGGAAGTTGTCTGTGATGAGCACGGAATCGATCCCACTGGGAGATACCAGGGCACTTCAGATCTACAGCTCGAAAGGGTTAATGTTTACTACAATGAGGCGAGCTGTGGGCGATTTGTTCCCCGTGCTGTGCTTATGGATCTGGAGCCTGGGACCATGGACAGTGTGAGGACCGGGCCTTATGGCCAGGTCTTTAGGCCTGATAACTTCGTTTTTGGCCAGTCCGGGGCTGGGAACAACTGGGCCAAGGGCCATTACACTGAGGGGGCCGAGCTCATTGATTCCGTTCTTGATGTCGTCAGGAAGGAGGCCGAGAACTGTGATTGCCTTCAAGGGTTTCAAGTGTGTCACTCTTTGGGGGGAGGCACTGGATCTGGAATGGGAACCCTCTTGATCTCCAAGATCCGAGAGGAATACCCTGATAGAATGATGCTCACTTTCTCTGTTTTCCCATCTCCCAAGGTGTCTGATACCGTGGTGGAGCCTTACAATGCTACACTTTCTGTGCATCAGCTGGTGGAGAATGCCGACGAGTGTATGGTGCTGGACAATGAGGCCCTCTACGACATCTGCTTCAGGACTCTCAAGCTCACGACACCTAGCTTTGGTGATTTGAACCATTTGATATCTGCAACAATGAGTGGAGTCACCTGCTGCCTGAGGTTTCCTGGCCAGTTGAACTCAGATCTGAGGAAGCTGGCAGTGAATCTGATCCCTTTCCCCCGTCTTCACTTTTTTATGGTGGGATTTGCCCCTTTGACCTCTCGTGGTTCACAGCAATACAGAGCCCTTACAGTTCCGGAGCTCACACAACAGATGTGGGATTCCAAGAACATGATGTGCGCTGCAGATCCACGCCATGGCAGGTATCTGACGGCATCTGCTATGTTCAGGGGCAAGATGAGTACCAAAGAGGTGGATGAGCAAATGATGAATGTTCAGAACAAGAATTCCTCCTACTTTGTGGAATGGATCCCTAATAATGTGAAATCCAGTGCATGTGATATTCCACCAAAAGGCCTGTCTATGTCGTCAACATTCATTGGTAACTCGACATCCATTCAGGAGATGTTCAGGAGAGTAAATGAGAAGGACACCACTAAAGCAAAGAGTAACATGAATGATTTGGTTTCTGAGTACATGCAGTACCAGGATGCCAGCGCAGAGGATGATGAATACTATGATGATGAAGAATCAGCTCAGGAGAGCTAG___ATATCGTTAGTTATTAGCTCACCATCAACAACAGCTAGTTGTTTCAACGCCTAGTAGTTGTTTGTGTGGATTTCATTTACATTTCTTGTTCTTTCATAGTCTGCTCTGCTCTACTGGAGGTTCAAGATTTGAATTCATAAGCTTTGTATACAACTCCATATGCTTTTGCTTTTGTTCAGTAGATGAATCATGACAATATTTTGAATTTGTTCGTCTGATATATAGCTACACTATATGCAGCACTGGCAGGTTTTTAATTTTGTTGGTCAGATATAATATTGGAAGACCATATTTTTCATTTTTACTACCTTGTGGCAACTGTGATTTTTACTACTTTGTGATAACTGTCCATGTGCTGATTATGGTTGTTTGTGTTGTTTGCGAGTTTCCTAGTGTCCGTTGTTCTAATTGTTAAAATAAGATTGTCTATCTTATGTTGTAGAGTTGGCATGGATTTGTATCATCTGGTAGTTATTGGGGACATTTAGAGAGATTATAATGTTAAATGTTGCTGGATTCTGTATATCTG

Fln Alignment:

Contig640___MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYQGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSACDIPPKGLSMSSTFIGNSTSIQEMFRRVNEKDT----------------------TKAKSNMNDLVSEYMQ
D5ABQ9_____________MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYQGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSACDIPPKGLSMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYMQ

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
140		33		66	0.997452
159		50		50	1.0
480	40		60		1.0
516		80		20	0.995493
855		14		85	0.993533
873	83	16			0.994512
891	87		12		0.992554
1105		88		11	0.923564
1123		12	87		0.992554
1159	87		12		0.992554
1273		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain