SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene622

Length: 2352 nt

UniGene Fasta

>sp_v3.0_unigene622
CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGTGATTAGAAATGGGCAATTGGAGCTGGGGGTGTACAGGGGCAGGCCGAGGAGGAGAACGCAGGAGAAGATATAAATCGAATTCCATTTGACTGAGCATCCAATGCAGTTGGTGATCGGATTGAGATAACTAAATCGGTGTTGATGGTTTCTGCCACTTCAACAGAGATTGACAACAATTAGGTGGTTGGAACGATGGCAACGATGCAGCAGAGCTTGAGAAAGGCCTACGGTGCATTGAAGGACACCACCAAAGTTGGCCTCGCCAAGGTCAATAGCGATTACAAGGAGTTGGACGTAGCTGTGGTCAAGGCCACCAATCATGTCGAGTGTCCTCCAAAGGAAAGGCATGTCAAAAAACTTTTTCTGGCGACCTCATCAGCTCGGCCTCGGGCGGATGTAGCTTACTGTATACATGCTCTTGCCAGGCGACTCGCCAAAACTCATAACTGGACGGTTGCATTGAAGACATTGGTAGTTATCCATAGAACATTAAGGGAGGGAGATCCTACATTTAGGGAAGAGCTATTGAACTTCTCATTTAGAGGGCACATTCTTCGTTTATCCAATTTCAAGGATGACTCAAGTCCTATTGCTTGGGACTGCTCTGCATGGGTTCGGACATATGCATTATTCTTGGAAGAGCGTTTGGAGTGCTTTAGAGTTTTAAAGTATGATGTAGAAGCTGAACGGTTAACATCAAAGGCATCAAATGGACAGGAGAAGGGTCATAGCAGAACCAGAGACTTGGATACTGAGGATTTATTAGAGCATTTGCCTGCCTTGCAACAATTGCTATACCGCCTTGTTGGCTGCCAGCCCGAGGGAGCGGCTGTTGGCAACTATGTCATTCAATATGCCTTGGCATTGGTCTTGAAGGAGAGCTTTAAGATTTATTGTGCAATCAATGATGGTATTATCAATATGGTGGACAAGTTTTTTGAGATGCCAAGACACGAAGCCATCAAGGCCCTTGATATTTACAGGAGGGCTGGTCAACAGGCTGAGAGTCTGTCTCAATTTTATGAAGTTTGCAAAGGCCTAGAACTTGCCCGAAACTTCCAGTTCCCAGTATTGGGTCAGCCACCTCAGTCATTTCTATCAACAATGGAAGAATATATTCGAGATGCTCCTCGCGTGGTTCCTGTAGCAAGAGAGGTGCTGGAATTTCAGGAGAAACATCTTCTGACCTATAAACCTGAAGAAGCTTCTCCTTCAGAGGACCAAAAAGAAGAAGAAAAGGAAGCTCCAGTGGTTGAAGTTGAACCTTCTCTGCATGAAAGTGCTATTGTACCAGTATCTTCTGCAGAGACTGGCGATTTACTGGGTCTAACTGAGGTGAACCCTGATCCCTCGGCACTGGAGGAAAGAAATGCCTTGGCTTTAGCTATTGTTACATCCGGTGCTCAAACATCCCATGATTCTAATCTAATGCCAGGCATGGCACTAGATGGTACTGGGTGGGAACTGGCCCTAGTCACTACACCCACCAATAACAATTCGAGTCAGATTGATAGTAAATTGGCTGGTGGCTTTGACAAGCTCACATTGGATAGTCTATATGAAGATGCAATGGTTCGGCAACCTGCTTACAATGGACAAGGGGGCTATGGAAGCAACCAATATGGGAACAATCCTTTTGAGTCTAATGCTGTGCTGTCATCAGGGTTATATGACCCCTTTTCCATGTCAAACAATGTTCCACCACCTCCCAATGTTCAGATGGCAGCCATGGCCCAGCAGCAACATGCAATGGTTCTTCATCAACAGCCACAGCAGATGATGCCAGTGTCACCAACAATGACGATGATGCCCCAATCTGCAAACCCTTTTGGTGATCCATTTGAAACAAATTATACTCATGGTGTTGGGGCCTTTCCACAAAGCTCTCATCAGAATAATCCATTTGGAAACCCTGGCTTTCTGTAAACATAAAGCAAAATCTTTATCATTTGTTCATAGCTTGCATGCTGAAATTGTGCTATAGAGCCATCTGCCATAATTTGTAAAAGATGTTTCCCAATGATATGGTTGAGATTGTGAGTTCACAGGTTGGTCAGAGTGGTTTCCAGCTGGCAGATTGTGCCAGTTAGGTGGTTGAAACGTTCATAGATATCTGCGTTAATAGAGCTTGATTATATTCACAAATTTTGGGACAACTGATTGTATACTGTACAATAGCAGGAATTCAGGATTATTTTGTCATTGCATGTTACCTTCTCGTTAATGCGTGTTCTGTACTTTTCAACATTTACCTCATGTAGCCTGCCATATTTCCATTTTTTATTTCTGTGGTTATGAATCGTGATTTAGTACC

Ace file of the UniGene sp_v3.0_unigene622

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative clathrin assembly protein [Arabidopsis thaliana] sp\|P94017.2\|CAP9_ARATH RecName: Full=Putative clathrin assembly protein At1g14910 gb\|AAM20134.1\| unknown protein [Arabidopsis thaliana] gb\|AEE29241.1\| putative clathrin assembly protein [Arabidopsi	-	-	0.0	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Sma3	Clathrin assembly protein, putative	-	-	1.78e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	9.497e-08	-

Source	Gene names
Sma3	AT5G35200; At1g14910; At2g01600; At4g25940; At5g35200; At5g57200; CHLREDRAFT_191396; F10B6.32; F20B18.50; F2I9.22; GSVIVT00009255001; GSVIVT00009256001; GSVIVT00016968001; GSVIVT00017115001; GSVIVT00030545001; K3D20.4; MJB24.1; MtrDRAFT_AC182813g7v2; OJ10

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	coated pit	GO:0005905	Cellular Component	-
Sma3	clathrin coat	GO:0030118	Cellular Component	-
Sma3	cytoplasmic vesicle	GO:0031410	Cellular Component	-
Sma3	phospholipid binding	GO:0005543	Molecular Function	-
Sma3	1-phosphatidylinositol binding	GO:0005545	Molecular Function	-
Sma3	clathrin binding	GO:0030276	Molecular Function	-
Sma3	endocytosis	GO:0006897	Biological Process	-
Sma3	clathrin coat assembly	GO:0048268	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	ENTH/VHS	IPR008942	-	-
Sma3	ANTH	IPR011417	-	-
Sma3	Epsin-like, N-terminal	IPR013809	-	-
Sma3	Clathrin adaptor, phosphoinositide-binding, GAT-like	IPR014712	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G14910.1	ENTH/ANTH/VHS superfamily protein chr1:5139928-5143571 REVERSE LENGTH=692	62%
RefSeq	Arabidopsis thaliana	NP_172944.1	putative clathrin assembly protein [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002311513.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKD7

Fln msg: your sequence is longer than subject: 578 - 547

Fln protein: MATMQQSLRKAYGALKDTTKVGLAKVNSDYKELDVAVVKATNHVECPPKERHVKKLFLATSSARPRADVAYCIHALARRLAKTHNWTVALKTLVVIHRTLREGDPTFREELLNFSFRGHILRLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRVLKYDVEAERLTSKASNGQEKGHSRTRDLDTEDLLEHLPALQQLLYRLVGCQPEGAAVGNYVIQYALALVLKESFKIYCAINDGIINMVDKFFEMPRHEAIKALDIYRRAGQQAESLSQFYEVCKGLELARNFQFPVLGQPPQSFLSTMEEYIRDAPRVVPVAREVLEFQEKHLLTYKPEEASPSEDQKEEEKEAPVVEVEPSLHESAIVPVSSAETGDLLGLTEVNPDPSALEERNALALAIVTSGAQTSHDSNLMPGMALDGTGWELALVTTPTNNNSSQIDSKLAGGFDKLTLDSLYEDAMVRQPAYNGQGGYGSNQYGNNPFESNAVLSSGLYDPFSMSNNVPPPPNVQMAAMAQQQHAMVLHQQPQQMMPVSPTMTMMPQSANPFGDPFETNYTHGVGAFPQSSHQNNPFGNPGFL*

Protein Length: 579

Fln nts: CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGTGATTAGAAATGGGCAATTGGAGCTGGGGGTGTACAGGGGCAGGCCGAGGAGGAGAACGCAGGAGAAGATATAAATCGAATTCCATTTGACTGAGCATCCAATGCAGTTGGTGATCGGATTGAGATAACTAAATCGGTGTTGATGGTTTCTGCCACTTCAACAGAGATTGACAACAATTAGGTGGTTGGAACG_-_ATGGCAACGATGCAGCAGAGCTTGAGAAAGGCCTACGGTGCATTGAAGGACACCACCAAAGTTGGCCTCGCCAAGGTCAATAGCGATTACAAGGAGTTGGACGTAGCTGTGGTCAAGGCCACCAATCATGTCGAGTGTCCTCCAAAGGAAAGGCATGTCAAAAAACTTTTTCTGGCGACCTCATCAGCTCGGCCTCGGGCGGATGTAGCTTACTGTATACATGCTCTTGCCAGGCGACTCGCCAAAACTCATAACTGGACGGTTGCATTGAAGACATTGGTAGTTATCCATAGAACATTAAGGGAGGGAGATCCTACATTTAGGGAAGAGCTATTGAACTTCTCATTTAGAGGGCACATTCTTCGTTTATCCAATTTCAAGGATGACTCAAGTCCTATTGCTTGGGACTGCTCTGCATGGGTTCGGACATATGCATTATTCTTGGAAGAGCGTTTGGAGTGCTTTAGAGTTTTAAAGTATGATGTAGAAGCTGAACGGTTAACATCAAAGGCATCAAATGGACAGGAGAAGGGTCATAGCAGAACCAGAGACTTGGATACTGAGGATTTATTAGAGCATTTGCCTGCCTTGCAACAATTGCTATACCGCCTTGTTGGCTGCCAGCCCGAGGGAGCGGCTGTTGGCAACTATGTCATTCAATATGCCTTGGCATTGGTCTTGAAGGAGAGCTTTAAGATTTATTGTGCAATCAATGATGGTATTATCAATATGGTGGACAAGTTTTTTGAGATGCCAAGACACGAAGCCATCAAGGCCCTTGATATTTACAGGAGGGCTGGTCAACAGGCTGAGAGTCTGTCTCAATTTTATGAAGTTTGCAAAGGCCTAGAACTTGCCCGAAACTTCCAGTTCCCAGTATTGGGTCAGCCACCTCAGTCATTTCTATCAACAATGGAAGAATATATTCGAGATGCTCCTCGCGTGGTTCCTGTAGCAAGAGAGGTGCTGGAATTTCAGGAGAAACATCTTCTGACCTATAAACCTGAAGAAGCTTCTCCTTCAGAGGACCAAAAAGAAGAAGAAAAGGAAGCTCCAGTGGTTGAAGTTGAACCTTCTCTGCATGAAAGTGCTATTGTACCAGTATCTTCTGCAGAGACTGGCGATTTACTGGGTCTAACTGAGGTGAACCCTGATCCCTCGGCACTGGAGGAAAGAAATGCCTTGGCTTTAGCTATTGTTACATCCGGTGCTCAAACATCCCATGATTCTAATCTAATGCCAGGCATGGCACTAGATGGTACTGGGTGGGAACTGGCCCTAGTCACTACACCCACCAATAACAATTCGAGTCAGATTGATAGTAAATTGGCTGGTGGCTTTGACAAGCTCACATTGGATAGTCTATATGAAGATGCAATGGTTCGGCAACCTGCTTACAATGGACAAGGGGGCTATGGAAGCAACCAATATGGGAACAATCCTTTTGAGTCTAATGCTGTGCTGTCATCAGGGTTATATGACCCCTTTTCCATGTCAAACAATGTTCCACCACCTCCCAATGTTCAGATGGCAGCCATGGCCCAGCAGCAACATGCAATGGTTCTTCATCAACAGCCACAGCAGATGATGCCAGTGTCACCAACAATGACGATGATGCCCCAATCTGCAAACCCTTTTGGTGATCCATTTGAAACAAATTATACTCATGGTGTTGGGGCCTTTCCACAAAGCTCTCATCAGAATAATCCATTTGGAAACCCTGGCTTTCTGTAA___ACATAAAGCAAAATCTTTATCATTTGTTCATAGCTTGCATGCTGAAATTGTGCTATAGAGCCATCTGCCATAATTTGTAAAAGATGTTTCCCAATGATATGGTTGAGATTGTGAGTTCACAGGTTGGTCAGAGTGGTTTCCAGCTGGCAGATTGTGCCAGTTAGGTGGTTGAAACGTTCATAGATATCTGCGTTAATAGAGCTTGATTATATTCACAAATTTTGGGACAACTGATTGTATACTGTACAATAGCAGGAATTCAGGATTATTTTGTCATTGCATGTTACCTTCTCGTTAATGCGTGTTCTGTACTTTTCAACATTTACCTCATGTAGCCTGCCATATTTCCATTTTTTATTTCTGTGGTTATGAATCGTGATTTAGTACC

Fln Alignment:

Contig622___QQSLRKAYGALKDTTKVGLAKVNSDYKELDVAVVKATNHVECPPKERHVKKLFLATSSARPRADVAYCIHALARRLAKTHNWTVALKTLVVIHRTLREGDPTFREELLNFS-FRGHILRLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRVLKYDVEAERLTSKASNGQEKGHSRTRDLDTEDXXXXXXXXXXXXYRLVGCQPEGAAVGNYVIQYALALVLKESFKIYCAINDGIINMVDKFFEMPRHEAIKALDIYRRAGQQAESLSQFYEVCKGLELARNFQFPVLGQPPQSFLSTMEEYIRDAPRVVPVAREVLEFQEKHLLTYKPEEASPSEDQXXXXXXXXXXXXXXSLHESAIVPVSSAETGDLLGLTEVNPDPSALEERNALALAIV-TSGAQTSHDSNLMPGMALDGTGWELALVTTPTNNNSSQIDSKLAGGFDKLTLDSLYEDAMVRQPAXXXXXXXXXXXXXXXPFESNAVLSSGLYDPFSMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANPFGDPFETNYTHGVGAFPQSSHQNNPFGNPGFL
B8LKD7_____________QQSLRKALGALKDTTTVSLAKVNSDYKDLDIAIVKATNHVERPAKEKHIRIIFAATSATRPRADVAYCIHALARRLAKTHNWAVALKTLIVIHRALREVDPTFREELINYSRSRGHILNLSYFKDDSSSNAWDYSAWVRSYALFLEERLECYRVLKYDIETERL-------------RTRELDTVELLEQLPALQQYLYRLMGCQPEGAAISNHVIQYALTAVSRESIKLYTAINDATINLVDKFFEMQRHDAIKALDIYRRAGKQAEKLSEFYEVCKSLDLGRGFKFPTLEQPPASFISAMEEYVRDAPRASSARRELIESVPKTLALEYKKKSDPQDDAPPPPPPPPPEPVKESVAPVQTVP---TVTTDLLGFDDISPDPSSLEEKNALALAIVPTTDNSSNGTSNSARDIPNGATGWELALVTTSSSNSSVQAESKLAGGFDKLTLDSLYEDAMTRQVS-----SYHTGQVAPNPFEASPMMQPG-HDPFYAS----------QKVAPPSAVQMASMAQQQQAFMAQQQMMGQQLPANPFGNPYTAAYPYAAGTPYQAQY---PYGNAGYM

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
2246	14			85	0.993533
2249	14			85	0.993533
2251	14	85			0.993533
2252		85	14		0.993533
2281	25	75			0.996473
2282	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain