SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene598

Length: 2063 nt

UniGene Fasta

>sp_v3.0_unigene598
CTTCAGTAATCCTTATTGCCCAATGCAAAACCAGACTCAATCAAGTAGTGACCTCTTTCTCTTCAACTTCGCCTCCCGTCTTTCATTCTCGAAGTTTCTCCATTTTTCAGGTCAAAAGGGCAGACACTCGCAGGGCAGCGACTGTGGGTTTAGGGTTTAATAGATGGGTATCTACCGTGCCAGTTTCTTCAAGAAAGACCCGCAGAAAGACTGGAGAAATCGTGTCGACTTTACTTGAAGTGGGTGGTGTCAAGATTAGCAAAGATGATGTAGTAAGGGAGAATGATCCAACAAACAATGTGCCGGATTCAATTTTTTCGAAAATAGGTGTGCAGCTTCACAGAAGGGACAATCACCCACTTGGGATCTTGAAGCGGGAGATCTACAATTACTTTGATAACAATTTTCCAGGCTTATTCAACAAGTTTGATAATCTTTGTCCCATTGTATCTGTTAAAATGAACTTTGATGATGTATTGGTGCCACATGACCATGTGAGTAGAACTTACAATGATACTTACTATATAAATTCTGAAACTGTGCTACGATGCCATACAAGTGCTCATCAAGCAGAGTTGTTGAGGGAAGGGTACTCTTACTTTCTTGTAACCGGAGATGTTTATCGCAGAGACTCTGTAGATTCTACACATTACCCAGTCTTCCACCAGATGGAAGGTTTCCGTGTTTTTACTCCAGCTGACTGGGAAGCATCTGGTGTAGATGGTACTACTTATGCAGCAACGGATCTAAAGAAGAATCTTGAGGGGTTAGCACAACATCTGTTTGGTGATGTTGAAATGCGGTGGGTGGATGCCTACTTTCCATTTACCAATCCATCCTTTGAGCTAGAAATCTATTTTCAGATTGTTCACTCAGGGGAATTGGATGGAGGTGTTGGGTTGTGGTGTAACTGAGCAGAAGATACTAATTGATAATGGAAGAACAGGAAGTACTGCATGGGCATTTGGACTTGGGCTTGAAAGACTTGCAATGGTCCTTTTTGATATTCCAGATATTCGTCTTTTCTGGTCCAGTGATTCACGCTTTACCTCTCAATTTTCCAGTGGACAGCTTGGTGTCAAGTTTAAGCCTTTTTCAAAGTTCCCTCCTTGTTACAAGGATATAAGTTTTTGGATCAGTGAATCATTTACTGAAAACAATTTCTGTGAAGTTGTACGTGGTGTTGCTGGGGATCTTGCAGAGCAGGTATCTTTGATTGATAATTTTACAAATAAGAAGGGAATGACCAGTCACTGTTACAGAATTACGTATCGTTCCATGGAGCGTTCTCTTACTGATGAAGAGGTTAACCAATTACAGGGTCGTGTCAGAGATGAAGTGGAAAACAAGTTGAATGTGACCATTAGATAATTGTGATTTTTTGTTTTTCTAATCTGTTTTGAGATTGTCTGCTATCCCATTTGCACATTTTCGTACATTCTTTGTGACAAACAAATTCTATTGGGATCATTTGATGTTTAATTAAAGGAGCTTAAACAGGAGATTATTCTCCCCGTGAAGTAGCAGCATTCTTTCAGCCAGGCAATAAGATTACAAATGCATTAAATTTACTTCAATGTTACTTAGGGTGAAAGGAGACCTGAATTCATGTTTTCGAGTTAGAAGCAAAAACCTTAGTGCTGCGGTATCTGAAGCACGGAATTTGTATGACAGAAGGATTCTATCATATGTAGTGGAATGCCTGCTTCAATCGATGGTTATTGTAATTTTCGTGAAAATAAAGTATCATTCGACTTTCTTATGCTAAAATATTTCCCAACATGTACGTACTGGCATTAAATAGAACTTTTAACGGTTTTGAATACGTTGATTTGAAAATGTAAAGGTGATTAATCACTGTTGCACCATCAATGGGATGGACGTAACAGCTGCATTAAGTAATTTAATTTGCAAGTTAGATTAATTGAGATCGAATTTGACGGAAGCTACACATAAGGCCTAAATGAATACGGCCCATGTTTATCTTCAGGGAAATCTGTATGGACTTTTATAATGTACCGATCCTTGTAAATTCTAATTGATCTGCTATGCTTATTCTTTCC

Ace file of the UniGene sp_v3.0_unigene598

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phenylalanyl-tRNA synthetase [Arabidopsis thaliana] sp\|Q94K73.1\|SYFM_ARATH RecName: Full=Phenylalanyl-tRNA synthetase, chloroplastic/mitochondrial; AltName: Full=Phenylalanine--tRNA ligase; Short=PheRS; Flags: Precursor gb\|AAK44062.1\|AF370247_1 putative p	-	-	0.0	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	Chromosome undetermined scaffold_80, whole genome shotgun sequence	-	-	3.029e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:6.1.1.2-	-	1.317e-09	-

Source	Gene names
Sma3	At3g58140; CHLREDRAFT_166227; F9D24.50; GSVIVT00001559001; GSVIVT00025667001; GSVIVT00025672001; GSVIVT00025680001; GSVIVT00035764001; GSVIVT00035766001; GSVIVT00035775001; LOC_Os12g34860; MICPUCDRAFT_18602; MICPUN_61175; OSTLU_119609; Os12g0533700; OsI_3

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	tRNA binding	GO:0000049	Molecular Function	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	phenylalanine-tRNA ligase activity	GO:0004826	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	phenylalanyl-tRNA aminoacylation	GO:0006432	Biological Process	-
Sma3	tRNA processing	GO:0008033	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phenylalanyl-tRNA synthetase	IPR002319	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Phenylalanyl-tRNA synthetase, class IIc, mitochondrial	IPR004530	-	-
Sma3	Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding	IPR005121	-	-
Sma3	Aminoacyl-tRNA synthetase, class II	IPR006195	-	-
Sma3		IPR018157	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G58140.1	phenylalanyl-tRNA synthetase class IIc family protein chr3:21529988-21532386 REVERSE LENGTH=429	65%
RefSeq	Arabidopsis thaliana	NP_567061.1	phenylalanyl-tRNA synthetase [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002327280.1	predicted protein [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMM1

Fln msg: Separated hits, possible frame ERROR between 863 and 865, atg_distance in limit (1-15): atg_distance = 10, W2: There is no M at the beginning,

Fln protein: SVILIAQCKTRLNQVVTSFSSTSPPVFHSRSFSIFQVKRADTRRAATVGLGFNRWVSTVPVSSRKTRRKTGEIVSTLLEVGGVKISKDDVVRENDPTNNVPDSIFSKIGVQLHRRDNHPLGILKREIYNYFDNNFPGLFNKFDNLCPIVSVKMNFDDVLVPHDHVSRTYNDTYYINSETVLRCHTSAHQAELLREGYSYFLVTGDVYRRDSVDSTHYPVFHQMEGFRVFTPADWEASGVDGTTYAATDLKKNLEGLAQHLFGDVEMRWVDAYFPFTNPSFELEIYFxxLFTQGNWMEVLGCGVTEQKILIDNGRTGSTAWAFGLGLERLAMVLFDIPDIRLFWSSDSRFTSQFSSGQLGVKFKPFSKFPPCYKDISFWISESFTENNFCEVVRGVAGDLAEQVSLIDNFTNKKGMTSHCYRITYRSMERSLTDEEVNQLQGRVRDEVENKLNVTIR*

Protein Length: 458

Fln nts: CTTCAGTAATCCTTATTGCCCAATGCAAAACCAGACTCAATCAAGTAGTGACCTCTTTCTCTTCAACTTCGCCTCCCGTCTTTCATTCTCGAAGTTTCTCCATTTTTCAGGTCAAAAGGGCAGACACTCGCAGGGCAGCGACTGTGGGTTTAGGGTTTAATAGATGGGTATCTACCGTGCCAGTTTCTTCAAGAAAGACCCGCAGAAAGACTGGAGAAATCGTGTCGACTTTACTTGAAGTGGGTGGTGTCAAGATTAGCAAAGATGATGTAGTAAGGGAGAATGATCCAACAAACAATGTGCCGGATTCAATTTTTTCGAAAATAGGTGTGCAGCTTCACAGAAGGGACAATCACCCACTTGGGATCTTGAAGCGGGAGATCTACAATTACTTTGATAACAATTTTCCAGGCTTATTCAACAAGTTTGATAATCTTTGTCCCATTGTATCTGTTAAAATGAACTTTGATGATGTATTGGTGCCACATGACCATGTGAGTAGAACTTACAATGATACTTACTATATAAATTCTGAAACTGTGCTACGATGCCATACAAGTGCTCATCAAGCAGAGTTGTTGAGGGAAGGGTACTCTTACTTTCTTGTAACCGGAGATGTTTATCGCAGAGACTCTGTAGATTCTACACATTACCCAGTCTTCCACCAGATGGAAGGTTTCCGTGTTTTTACTCCAGCTGACTGGGAAGCATCTGGTGTAGATGGTACTACTTATGCAGCAACGGATCTAAAGAAGAATCTTGAGGGGTTAGCACAACATCTGTTTGGTGATGTTGAAATGCGGTGGGTGGATGCCTACTTTCCATTTACCAATCCATCCTTTGAGCTAGAAATCTATTTTCAxxxATTGTTCACTCAGGGGAATTGGATGGAGGTGTTGGGTTGTGGTGTAACTGAGCAGAAGATACTAATTGATAATGGAAGAACAGGAAGTACTGCATGGGCATTTGGACTTGGGCTTGAAAGACTTGCAATGGTCCTTTTTGATATTCCAGATATTCGTCTTTTCTGGTCCAGTGATTCACGCTTTACCTCTCAATTTTCCAGTGGACAGCTTGGTGTCAAGTTTAAGCCTTTTTCAAAGTTCCCTCCTTGTTACAAGGATATAAGTTTTTGGATCAGTGAATCATTTACTGAAAACAATTTCTGTGAAGTTGTACGTGGTGTTGCTGGGGATCTTGCAGAGCAGGTATCTTTGATTGATAATTTTACAAATAAGAAGGGAATGACCAGTCACTGTTACAGAATTACGTATCGTTCCATGGAGCGTTCTCTTACTGATGAAGAGGTTAACCAATTACAGGGTCGTGTCAGAGATGAAGTGGAAAACAAGTTGAATGTGACCATTAGATAATTGTGATTTTTTGTTTTTCTAATCTGTTTTGAGATTGTCTGCTATCCCATTTGCACATTTTCGTACATTCTTTGTGACAAACAAATTCTATTGGGATCATTTGATGTTTAATTAAAGGAGCTTAAACAGGAGATTATTCTCCCCGTGAAGTAGCAGCATTCTTTCAGCCAGGCAATAAGATTACAAATGCATTAAATTTACTTCAATGTTACTTAGGGTGAAAGGAGACCTGAATTCATGTTTTCGAGTTAGAAGCAAAAACCTTAGTGCTGCGGTATCTGAAGCACGGAATTTGTATGACAGAAGGATTCTATCATATGTAGTGGAATGCCTGCTTCAATCGATGGTTATTGTAATTTTCGTGAAAATAAAGTATCATTCGACTTTCTTATGCTAAAATATTTCCCAACATGTACGTACTGGCATTAAATAGAACTTTTAACGGTTTTGAATACGTTGATTTGAAAATGTAAAGGTGATTAATCACTGTTGCACCATCAATGGGATGGACGTAACAGCTGCATTAAGTAATTTAATTTGCAAGTTAGATTAATTGAGATCGAATTTGACGGAAGCTACACATAAGGCCTAAATGAATACGGCCCATGTTTATCTTCAGGGAAATCTGTATGGACTTTTATAATGTACCGATCCTTGTAAATTCTAATTGATCTGCTATGCTTATTCTTTCC

Fln Alignment:

Contig598___SVILIAQCKTRLNQXXXXXXXXXXXXXHSRSFSIFQVKRADTRRAATVGLGFNRWVSTVPVSSRKTRRKTGEIVSTLLEVGGVKISKDDVVRENDPTNNVPDSIFSKIGVQLHRRDNHPLGILKREIYNYFDNNFPGLFNKFDNLCPIVSVKMNFDDVLVPHDHVSRTYNDTYYINSETVLRCHTSAHQAELLREGYSYFLVTGDVYRRDSVDSTHYPVFHQMEGFRVFTPADWEASGVDGTTYAATDLKKNLEGLAQHLFGDVEMRWVDAYFPFTNPSFELEIYFQxLFTQGNWMEVLGCGVTEQKILIDNGRTGSTAWAFGLGLERLAMVLFDIPDIRLFWXXXXXXXXXXXXGQLGVKFKPFSKFPPCYKDISFWISESFTENNFCEVVRGVAGDLAEQVSLIDNFTNKKGMTSHCYRITYRSMERSLTDEEVNQLQGRVRDEVENKLNVTIR
B8LMM1_____________SISLIAQCKTRLNQVVTSFSSTSSPVVHSRSFSIFSVKRTGTCRAATVGLGFNRWVSTVPVSSKKTRRKTGEILSTLLEVGGVKISRDDVVRENDPTNNVPDSIFSKIGLQLHRRDNHPLRILKQEIYSYFDNNFPGLFNKFDNLCPVVSVKMNFDDVLVPHDHVSRTYNDTYYINAETVLRCHTSAHQAELLREGHSYFLVTGDVYRRDSVDSTHYPVFHQMEGFRVFTPVDWEASGVDGTSYAAMDLKKTLEGLAQHLFGNVEMRWVDAYFPFTDPSFELEIYFQxIYFQGNWMEVLGCGVTEQKILINNGRTGSTAWAFGLGLERLAMVLFDIPDIRLFWSSDLRFTSQFSSGQLGVKFKPFSKFPPCYKDISFWISESFTENNFCEVVRGIAGDLAEQVSLIDSFTNKKGMTSHCYRITYRSMERSLTDEEINQLQGRVRDEVENKLNVTIR

SNPs (tot: 3)

Position	A %	G %	T %	Probability
1462	16		83	0.994512
1466		83	16	0.994512
1631	80	20		0.999996

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain