SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene594

Length: 2627 nt

UniGene Fasta

>sp_v3.0_unigene594
ATTCCTTTCTGGGTCAGACACCCTCTGTAAGTCAGTCAATCTTAGACGTAGATGTCAAATTCCAGAGCTTGTTGCTGGATTTACGCTTTGGGTTCCGAGGTTTTAATCTCTGTATTCTGTAAGTGCAAAGCTTCAAATTTCTGACTGCCATGTCACTTTACAGGATCTCAGTGCCTTCCACGATCAGGGATTTTGACACTCACGGTGGGGTGGGGGCATGTGTAGATTTTAGAAAGCGATGCACAATAGACAATGGTATGATGGACTATGTTTTGGGGTAAATATAATTTATATAATAATCACTTCTCTTTGATGATGCGAATCGACAACAATGGGAGCAATTTGCTCAAGGAGATCCGCTGTTGACACCTCTGATAGCAACTCAGGTGAGAGGACTGATGGGCATGCTCATGGATGCATACCTGTGCCATTCGCAGGATTGGGTTTCCAATTATCTCGGGCTTCTATGAGAAATATGCCTCCACTGGAAAATGTGGGGAATGCAGAAAATGAGCGACGAGAGCACATTTCACTGGCTAATAGAGAAGTTACCTGTCACAAGAACTTGCATCACAGTTATGACAGAAGTGATCAGAAGAGATTATCAAGGGTTCTCTCAGGGAAAGCCAAGATTGCAAAGTCAAAAACTCAAATCGTGGCGAAAATGGGGGCAGCCAAGTTTTCAGAAGTTGGAACCCTGTTAGGGAGGGCTGGTACAGCTGGTCTTGGGAAGGCAGTGGAGGCTTTGGATACTCTCGGGAGTAGCATGACCAACTTAAATCTTAGCAGTGGCTTTGCATCGGGTGTTACTCCTAAGGGTGTTAAAATAGCAATATTGTCATTTGAAGTTGCTAATACTGTTGTGAAGGGAGCAAATCTAACGCAGTCTCTTTCTGAAGAAAATATCAGGTTCTTGAAAGATGAGATTCTTCACTCAGAAGGTGTTCAATGCCTTGTTTCCAATGACATGAATGAGCTAATGAGAATTGTGGCTAATGACAAAAGGGACGAGCTAAAGATTTTTGCAGGGGAGGTGGTCCGATTTGGAAATCATTGTAAAGATCCTCAGTGGCACCAACTGGACCGCTACTTCGAAAAGTTAGGCACGGAACTTCCCATACAGAAGCAATCAAAAGATGAAGCTGAAGCAATGATGCAATACTTGATGACTCTGGCACAAAATACAGCTGAATTGTATCATGAATTGCATGCTTTGGATAGACTCGATCAAGATTATCGAAGGAAGCTTCAGGAGGAAGAATCATCAAATGGGCATCAAAGAGGAGAAGGCGTTGCAATTTTGAGGAGTGAGTTAAAAAGCCAAAGAAAGCATGTGAAGAATCTAAAAAAGAAATCGCTGTGGTCAAAAATTTTGGAAGAGGTGATGGAGAAACTTGTGGACATTGTGCATTTCCTACATCAAGAAATTCAGGAAGCTTTTGGGGATGCTGCCATAGAAAACAAGAAATCTGTGAACAAGAAGGGTTCACTTGGAAGTCCACAGAGGCTGGGTAAAGCTGGTCTGTCTTTACACTATGCGAATGTTATCAATCAAATTGACAGAATGGTTTCTCGCCCAAGCTCTGTCCCTGCAAACACTAGAGACAGCTTGTATCAAGGATTGCCGCCAACTATAAAGTCAGCTTTGCGTTCAAAAATACATTCGACTCCTGTCAAGGAGGAGCTAACTGTCGTGCAGATCAAAGCAGAGATGGAGAAAATATTGGCATGGCTAGTTCCTGTTGCTACAAATACCACAAAAGCTCATCATGGATTTGGATGGGTTGGGGAGTGGGCAAGCACTGGTTCTTCTTTAGATCGAAGGCAACCCGGTCAAAATGAACTAACACTCATTCAAACGCTTCATCATGCCTCAAAAGAGAAGACAGAGGCTTACATTCTTGATTTGATTGTATGGCTTCATCACCTTGTAAGCCTGGCCAGAAACACTCCGAGCAAGTCACCTATTCGTTCTCCAGTACAAACAAAAGCAACCCTTTGTCAGCCGGCTTCTGATAAATCCATTACAACATCAAACGGACATGTTATAGCGCCTGAACTCTCACAAGAAGACAAAAATATGCTCAAAGATGTGAACAAACGGAAGTTGACACCAGGAATCAGCAAAAGTCAGGAATTTGATACATTTAAGCCAAGATGTACCGGCCAATCTGTCAATAGGCTGAGCAAGAGCAATAGCCACTCACCAACTAGCAATAGAAAAACTGAGTTCAGTGGAGTGAGGAGGCAACATACACCTACACTTCCTGCTATATATTTTGACATTGATAGAATAAAAGCTCTAGATGTAATTGACAGGGTTGATACACTCAGTTTATTGTAGTTTGTATGCCTGAGCCTTTTATAGTTTCCACTTTTGAATATTAGTAGCCTGAATTAGTTGTAACAAGTTGGGTGATGTATTTTTAGTCACTAGAGGATCAAGCTTAGCTTTTCCTGTTATAAATTTTGTATAGTCCGAAAGTTATATACATAAAGGAAATATCTATTTCTAATCATGTATGTATACAGTTATTAGCATAAGTTGAATGTGTATGGAATGTACAATGTTAAAGCCATGTTATGCTAGAATCTCGCAGGAAATATTTCAATAATCTTCCCTGCAT

Ace file of the UniGene sp_v3.0_unigene594

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF668 multi-domain protein	-	-	1.0e-29	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	Chromosome undetermined scaffold_129, whole genome shotgun sequence	-	-	6.271e-06	-

Source	Gene names
Sma3	At1g30750; At1g34320; At5g08660; F23M19.3; GSVIVT00002300001; GSVIVT00002301001; GSVIVT00014410001; GSVIVT00019244001; OJ1004_H01.14; OSJNBa0088K19.7; OSJNBb0048I21.11; Os01g0873900; Os02g0551700; Os04g0433600; Os05g0430300; Os06g0716000; OsI_04625; OsI_0

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Helicase/RNase D C-terminal, HRDC domain	IPR002121	-	-
Sma3	DNA helicase, ATP-dependent, RecQ type	IPR004589	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Protein of unknown function DUF668	IPR007700	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G34320.1	Protein of unknown function (DUF668) chr1:12520713-12524046 FORWARD LENGTH=657	56%
RefSeq	Arabidopsis thaliana	NP_174692.1	uncharacterized protein [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002327227.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADD1

Fln msg: your sequence is longer than subject: 671 - 215

Fln protein: MGAICSRRSAVDTSDSNSGERTDGHAHGCIPVPFAGLGFQLSRASMRNMPPLENVGNAENERREHISLANREVTCHKNLHHSYDRSDQKRLSRVLSGKAKIAKSKTQIVAKMGAAKFSEVGTLLGRAGTAGLGKAVEALDTLGSSMTNLNLSSGFASGVTPKGVKIAILSFEVANTVVKGANLTQSLSEENIRFLKDEILHSEGVQCLVSNDMNELMRIVANDKRDELKIFAGEVVRFGNHCKDPQWHQLDRYFEKLGTELPIQKQSKDEAEAMMQYLMTLAQNTAELYHELHALDRLDQDYRRKLQEEESSNGHQRGEGVAILRSELKSQRKHVKNLKKKSLWSKILEEVMEKLVDIVHFLHQEIQEAFGDAAIENKKSVNKKGSLGSPQRLGKAGLSLHYANVINQIDRMVSRPSSVPANTRDSLYQGLPPTIKSALRSKIHSTPVKEELTVVQIKAEMEKILAWLVPVATNTTKAHHGFGWVGEWASTGSSLDRRQPGQNELTLIQTLHHASKEKTEAYILDLIVWLHHLVSLARNTPSKSPIRSPVQTKATLCQPASDKSITTSNGHVIAPELSQEDKNMLKDVNKRKLTPGISKSQEFDTFKPRCTGQSVNRLSKSNSHSPTSNRKTEFSGVRRQHTPTLPAIYFDIDRIKALDVIDRVDTLSLL*

Protein Length: 672

Fln nts: ATTCCTTTCTGGGTCAGACACCCTCTGTAAGTCAGTCAATCTTAGACGTAGATGTCAAATTCCAGAGCTTGTTGCTGGATTTACGCTTTGGGTTCCGAGGTTTTAATCTCTGTATTCTGTAAGTGCAAAGCTTCAAATTTCTGACTGCCATGTCACTTTACAGGATCTCAGTGCCTTCCACGATCAGGGATTTTGACACTCACGGTGGGGTGGGGGCATGTGTAGATTTTAGAAAGCGATGCACAATAGACAATGGTATGATGGACTATGTTTTGGGGTAAATATAATTTATATAATAATCACTTCTCTTTGATGATGCGAATCGACAACA_-_ATGGGAGCAATTTGCTCAAGGAGATCCGCTGTTGACACCTCTGATAGCAACTCAGGTGAGAGGACTGATGGGCATGCTCATGGATGCATACCTGTGCCATTCGCAGGATTGGGTTTCCAATTATCTCGGGCTTCTATGAGAAATATGCCTCCACTGGAAAATGTGGGGAATGCAGAAAATGAGCGACGAGAGCACATTTCACTGGCTAATAGAGAAGTTACCTGTCACAAGAACTTGCATCACAGTTATGACAGAAGTGATCAGAAGAGATTATCAAGGGTTCTCTCAGGGAAAGCCAAGATTGCAAAGTCAAAAACTCAAATCGTGGCGAAAATGGGGGCAGCCAAGTTTTCAGAAGTTGGAACCCTGTTAGGGAGGGCTGGTACAGCTGGTCTTGGGAAGGCAGTGGAGGCTTTGGATACTCTCGGGAGTAGCATGACCAACTTAAATCTTAGCAGTGGCTTTGCATCGGGTGTTACTCCTAAGGGTGTTAAAATAGCAATATTGTCATTTGAAGTTGCTAATACTGTTGTGAAGGGAGCAAATCTAACGCAGTCTCTTTCTGAAGAAAATATCAGGTTCTTGAAAGATGAGATTCTTCACTCAGAAGGTGTTCAATGCCTTGTTTCCAATGACATGAATGAGCTAATGAGAATTGTGGCTAATGACAAAAGGGACGAGCTAAAGATTTTTGCAGGGGAGGTGGTCCGATTTGGAAATCATTGTAAAGATCCTCAGTGGCACCAACTGGACCGCTACTTCGAAAAGTTAGGCACGGAACTTCCCATACAGAAGCAATCAAAAGATGAAGCTGAAGCAATGATGCAATACTTGATGACTCTGGCACAAAATACAGCTGAATTGTATCATGAATTGCATGCTTTGGATAGACTCGATCAAGATTATCGAAGGAAGCTTCAGGAGGAAGAATCATCAAATGGGCATCAAAGAGGAGAAGGCGTTGCAATTTTGAGGAGTGAGTTAAAAAGCCAAAGAAAGCATGTGAAGAATCTAAAAAAGAAATCGCTGTGGTCAAAAATTTTGGAAGAGGTGATGGAGAAACTTGTGGACATTGTGCATTTCCTACATCAAGAAATTCAGGAAGCTTTTGGGGATGCTGCCATAGAAAACAAGAAATCTGTGAACAAGAAGGGTTCACTTGGAAGTCCACAGAGGCTGGGTAAAGCTGGTCTGTCTTTACACTATGCGAATGTTATCAATCAAATTGACAGAATGGTTTCTCGCCCAAGCTCTGTCCCTGCAAACACTAGAGACAGCTTGTATCAAGGATTGCCGCCAACTATAAAGTCAGCTTTGCGTTCAAAAATACATTCGACTCCTGTCAAGGAGGAGCTAACTGTCGTGCAGATCAAAGCAGAGATGGAGAAAATATTGGCATGGCTAGTTCCTGTTGCTACAAATACCACAAAAGCTCATCATGGATTTGGATGGGTTGGGGAGTGGGCAAGCACTGGTTCTTCTTTAGATCGAAGGCAACCCGGTCAAAATGAACTAACACTCATTCAAACGCTTCATCATGCCTCAAAAGAGAAGACAGAGGCTTACATTCTTGATTTGATTGTATGGCTTCATCACCTTGTAAGCCTGGCCAGAAACACTCCGAGCAAGTCACCTATTCGTTCTCCAGTACAAACAAAAGCAACCCTTTGTCAGCCGGCTTCTGATAAATCCATTACAACATCAAACGGACATGTTATAGCGCCTGAACTCTCACAAGAAGACAAAAATATGCTCAAAGATGTGAACAAACGGAAGTTGACACCAGGAATCAGCAAAAGTCAGGAATTTGATACATTTAAGCCAAGATGTACCGGCCAATCTGTCAATAGGCTGAGCAAGAGCAATAGCCACTCACCAACTAGCAATAGAAAAACTGAGTTCAGTGGAGTGAGGAGGCAACATACACCTACACTTCCTGCTATATATTTTGACATTGATAGAATAAAAGCTCTAGATGTAATTGACAGGGTTGATACACTCAGTTTATTGTAG___TTTGTATGCCTGAGCCTTTTATAGTTTCCACTTTTGAATATTAGTAGCCTGAATTAGTTGTAACAAGTTGGGTGATGTATTTTTAGTCACTAGAGGATCAAGCTTAGCTTTTCCTGTTATAAATTTTGTATAGTCCGAAAGTTATATACATAAAGGAAATATCTATTTCTAATCATGTATGTATACAGTTATTAGCATAAGTTGAATGTGTATGGAATGTACAATGTTAAAGCCATGTTATGCTAGAATCTCGCAGGAAATATTTCAATAATCTTCCCTGCAT

Fln Alignment:

Contig594___MEKILAWLVPVATNTTKAHHGFGWVGEWASTGSSLDRRQPGQNELTLIQTLHHASKEKTEAYILDLIVWLHHLVSLARN------TPSKSPIRSPVQTKATLCQPASDKSITTSNGH-VIAPELSQEDKNMLKDVNKRKLTPGISKSQEFDTFKPRCTGQSVNRLSKSNSHSPTSNRKTEFSGVRRQHTPTLPAIYFDIDRIKALDVIDRVD
D5ADD1_____________MEKILTWLVPVATNTTKAHHGFGWVGEWANTGSALDRRLPGHNELTLIQTFHYAEKKRTESYIFELIVWLHHLVSRTKNSLNGNKSPIKSPVRSPVKKTANLSVTTPDKPTPTGNGQDKPLLELSQADRDMLKAVNFRRLTPGISKSQEFDTAKLRSADESTCKLIKSNSHSPTTNTKNEFNGPRR-HT-TLPTIDFDIDRTKALDVIDRVD

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1166	10			90	0.90298
1167		10	90		0.90298
1170			90	10	0.90298
1298		87		12	0.992554
2571	88		11		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain