SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene588

Length: 1908 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene588

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cop9 complex subunit 7a, putative n=1 Tax=Ricinus communis RepID=B9T5M0_RICCO	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome component (PCI) domain	IPR000717	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G02200.2	Proteasome component (PCI) domain protein chr3:406692-408919 FORWARD LENGTH=417	57%
RefSeq	Arabidopsis thaliana	NP_850826.1	Proteasome component (PCI) domain protein [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002323907.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRZ9

Fln msg:

Fln protein: MAALVETTDEDATLAVARFTAEMAWANAGPEVAEPEVIHCIEEAQSYMLERRWSELVSLLLTSADLIFANSAEKDLECIFTVICNLVTKAGSPDEALAMADQIVTKVIQQPSDKPALRLRILFNLYNMLENPYSKFLVYERALKLAANGKVADLIIPSFKKMDAFLKEWNIRKNNQRELFLAISNILKDNKGSAKDSYSFLLKYLATFDGEDAYTISEAKEEAVRAIIEFVKAPDMFQCDLLDMPAVAQLEKDGKYALVYRLLQIFLTQRLDSYLEFQAANSALLKSYGLVHEDCIMKMRLMSLADLASKGSGEISYVSVRDTLRVTDDDVEFWIVRAISAKLVDCKMDQMRQVAVVNRSTERVFGPPQWKELHSRLSVWKENIANIIRNIQKANAAVDQAPEALQGLAVQ*

Protein Length: 413

Fln nts: AAAACAGCGGTATCATCTCCGCTAGGTTCATGTCATGGAATCCGACAAAACTGAAAGAAAAAAACACAAAAAACTCGCCTCTCTAAAACTTTCTACGAAATTAATATAAAGGCACTGTGGCATTTATGCCCTTTGTTTGAGCAGCTGTCGAAATAGAGGAGCGCAAACGGGGGCTAGAGTTTCTGGAGGAAGGGCCTGAATATATATAAATATAAGAAGTTTTCAACGCCATTTACATCATTCAACCACACTATAAGG_-_ATGGCAGCACTTGTTGAGACTACGGACGAGGATGCTACTCTTGCTGTGGCTCGGTTCACTGCAGAAATGGCATGGGCCAATGCAGGGCCTGAAGTTGCAGAGCCTGAAGTGATACATTGCATTGAGGAAGCCCAATCCTATATGCTGGAAAGAAGATGGTCGGAGTTGGTATCTCTTTTACTCACTTCAGCTGACCTTATTTTTGCAAACTCAGCAGAGAAAGATCTCGAGTGTATTTTCACAGTCATCTGTAACCTTGTGACAAAAGCGGGAAGTCCAGATGAAGCTCTGGCCATGGCAGATCAGATAGTCACAAAAGTTATTCAACAACCTAGTGATAAACCTGCTTTGCGCTTGAGAATACTCTTCAATCTGTACAACATGCTTGAGAATCCATATAGCAAATTCTTGGTTTACGAGAGAGCTCTTAAGTTGGCAGCTAATGGGAAAGTTGCAGATCTTATCATTCCTTCTTTCAAAAAGATGGATGCATTCCTGAAAGAATGGAACATCCGTAAAAATAACCAGCGAGAACTTTTTCTGGCTATTTCCAACATCTTGAAAGACAATAAAGGTTCAGCAAAGGATTCTTACTCTTTTCTTCTGAAGTACTTAGCAACCTTTGATGGGGAGGATGCTTATACGATCAGTGAAGCAAAAGAAGAAGCTGTGAGGGCCATAATAGAATTTGTCAAAGCACCAGATATGTTCCAGTGCGACTTACTGGATATGCCTGCTGTGGCACAACTGGAGAAAGATGGAAAGTATGCATTGGTATACCGCTTGTTACAGATTTTCCTCACTCAGCGACTAGATTCTTATTTGGAATTTCAAGCTGCAAATTCTGCATTACTGAAAAGCTATGGTCTAGTCCATGAAGATTGCATAATGAAAATGCGGTTAATGTCTCTTGCTGACCTTGCTTCAAAAGGATCTGGAGAAATTTCGTATGTGTCTGTGAGGGATACATTGCGGGTTACAGATGATGATGTGGAATTTTGGATAGTTCGGGCAATCAGTGCAAAACTTGTAGATTGTAAGATGGATCAGATGCGTCAAGTAGCAGTTGTAAACCGGTCTACTGAACGAGTATTTGGACCACCTCAATGGAAAGAGCTACACTCAAGACTGTCTGTTTGGAAGGAAAATATTGCAAATATTATAAGAAATATCCAGAAGGCAAATGCTGCTGTTGACCAGGCACCTGAGGCATTACAAGGGTTGGCAGTCCAATAA___GCATTTATTTTGTATTTTGCTGGAATTTTGGCTGAACGAAACTTCTTTTGGGGTTTTCTAGGGTCCAGTGAAAGATGAGTTAACACTCATGACCAGGAAGGCTGTGCAGAAATTGAGATTTCTTACGTCAAAACAATTATTTTACATGTTCATAGCTGAGGTTAATGCTGATATGGTTTTATTTTCTCCATGGCATTTAGGTAATGAGTAAGTCGGATATTTGTGTTAAGCTGTTTGTGATTCAGCATGTAATCCCAGCTAAGTTTATTGGGATGTTATCTTAAGAATTTCTGTAAGACCTAATTGATGCCAACTCAAAATAGAATGATGCCTTCAAATGTGGATCATCTGTGGCCTTTATTATTCAATTTGTTGATGTGTTTCATTTCTCTTTTCTTTTATTTAATTCTAGGC

Fln Alignment:

Contig588___MAALVETTDEDATLAVARFTAEMAWANAGPEVAEPEVIHCIEEAQSYMLERRWSELVSLLLTSADLIFANSAEKDLECIFTVICNLVTKAGSPDEALAMADQIVTKVIQQPSDKPALRLRILFNLYNMLENPYSKFLVYERALKLAANGKVADLIIPSFKKMDAFLKEWNIRKNNQRELFLAISNILKDNKGSAKDSYSFLLKYLATFDGEDAYTISEAKEEAVRAIIEFVKAPDMFQCDLLDMPAVAQLEKDGKYALVYRLLQIFLTQRLDSYLEFQAANSALLKSYGLVHEDCIMKMRLMSLADLASKGSGEISYXXXXXXXXXXXXXXEFWIVRAISAKLVDCKMDQMRQVAVVNRSTERVFGPPQWKELHSRLSVWKENIANIIRNIQKANAAVDQAPEALQGLAVQ
B8LRZ9_____________MAALVETSDEDATLAVARFTAEMAWANAGPEVAEPQVIHYIEEAQSYMLERRWSDLVSLLLTSADLIFANSAEKDLECIFTVICNLVTKAGSPDEALAMAEQIVTKVTQQPSDKPALRLRILFNLYNMLENPYSKFLVYERALKLAANGKVADLIIPSFKKMDAFLKEWNIRKNNQRDLFLAISNILKDNKGSAKDSYSFLLKYLATFDGEDAYTTSEAKEEAVRAIIEFVKAPDMFQCDLLDMPAVAQLGKDGKYALVYRLLQIFLTQRLDSYLEFQAANSALLKSYGLVHEDCITKMRLMSLADLASKGSGEVSYVSVRDTLRVTDDDVEFWIVRAISAKLVDCKMDQMRQVAVVNRSTERVFGPSQWKELHSRLSVWKENIANIIRNIQKANAAADQAPEALQGMAVQ

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
561		20	80		0.995493
619		20	80		0.995493
1481	12		87		0.999964
1486		12		87	0.999964
1695	14		85		0.999981
1827		87		12	1.0
1834	94			5	0.998894
1838			93	6	0.99903
1845	26	73			1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain