SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene577

Length: 2071 nt

UniGene Fasta

>sp_v3.0_unigene577
AGAGAAGGAGAAAGACAAAGAAGAGGAGAGATCGAAGGGTAGCGACGAAGACCAAGGTCCAGACCTGAGACCCATTGGAGAACCCATTAGAAAATCCGGCAGGGGACGAGGCATCACGGTGCATTTTGCTGCATTTGAGCTCGACGGAAATCGATATGAATTGGAGGACCCTGTGTTGGTAACCCCGGAAGAGAAAAATGAGAAGCCATATGTTGCTATAATCAAGGATATAAAGCAGGCAAAAGATGGCTCTCTTGCTGTTGTAGGCCAATGGTTTTACCGGCCCGAGGAAGCTGAAAGGAAAGGAGGAGGAAGCTGGCAAGCACGTGATGCACGTGAACTATTTTATAGTTTCCATCATGATGAAGTGCCTGCAGAATCTGTTATGCACAAATGTGTTGTGCACTTTATTCCACTAAACAAGCAACTTCCTCCCCGCACAAAGCATCCAGGTTTTATTGTGCAAAAGGTTTATGACACAGTTGCGAGAAAACTTTGGAAATTGACTGACAAAGATTATGAAGATTCGAAGCAGAAAGAAATTGATTTGCTAGTGCAAAAAACTCGCAAGGCTTTGGGAGAACTCCCTGATGTTGAGTCAGATGAATTTGTCCCTGATCTAGAGGAGTCTGAAATGAACAAAAGACAGGTTCGAAGGAAGACTGTGACACCTATAAACACATTTAGAGATGAAGATGCAACAGGGAGATCAGAACCGTTTGGAAAAGCAGAAACACCAGGAAGCTCTATGAATGATGGACAGTGGGGAAATACTTCTGAGATTTATACCATTCTGTTGAATCAAAATGTACTAACTGGAGTGAAGTCACGTGATAGATGGTTGGAGAAAATCATGGAAGGGGTGAAGCATATATGCAGTTTAAATAGACAGATAGATTCTCTAGACAAAATGCAAGAAGACACTGAAGTGAAAGCTGTTGATGCAGATGGAGAATCCGAAGAGAAGGTTCATAAGACTGCAGAAAGCTCGGAGGGTCACCAAGAGAAAATAACTGAGGACAGTAAGGTGGACAATAATATTTTGTGGCCTGAGGCAGCTGTTGCAGCAATAACTGCACTTGAGAAGGCAGCTTATGAGAGTTTGGGCTCTGACAATCATAAGTACAATATAAAGATGCGGCAACTTGAGTTTAATCTGAAGAGTAATGCAATATTGGCAACACGTCTGCTAAAGAAAGAGCTGGAACCTTTAAGAGTTTTAAACATGTCACCTGCAGAATTAAAGGATGGTTTAACAGCAGAGGAAAAAACTACTCAAGAGCCTCAGGAGTTACAAACGATGCAGATGGCAGATGTCCGATGTTCAATATGCACGGAGAAGAAGGTTGGCGTGAGAGACATCATCCATGTTGGATATGGGGATCGATATCAGCTGGAGTGCCTGAAGTGTGGGAATTCATGGTACGCGTCCAGAGATTCTATCTCTTCCTTAACGATAGAATCTGTAAACCCTGTTAATCCTGTTGGCACAGCACCAGGGGCAACTACAAAGTTTGAAGAAGCTGAAAAGGCAATGGTGAGCCCACGTGAATTAGATAAGATAACAAATGGTGACATTGGACAGAAGGAAATACCAGCAGTGACACCCATTCAAGATCCTCAGACTGCTGGTGATGTTGCACCTGCAGCCCGTGATTCAAACCCTATAGAGAGCTAACTCAATTTTACTGAGGCCACACAACAAACAAATTAGATGATTTGTAGAAAGGATGGTTTGTGAAAATGTAAAGATGGGCAGGCTATTGCTGTATATATTCTTTGTATCGTCTTAGAGTCATGACAGACGGTTATGTCAGCACTGCAGCATCCTGAGTTGTTTTATGTCACAGTTTAGGAAGAAACTTACAAACAAATTAAGGGAGTTTTGCTGCAGGTATTGTAACATGTTATTACTGAAAATCGATTATTAGAACTTTTAATATAAGTATAACAATTAGCTCAGAAGTCGAAATAGATGCACATGGTGTACAGGGAGTGTCTGCATTCAGTTTCTCCTTGTTAATGGTAAGATCAGAGAATTATGATAGGATTTCATGCAGGTTGCTGAACC

Ace file of the UniGene sp_v3.0_unigene577

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] gb\|AAL86355.1\| unknown protein [Arabidopsis thaliana] gb\|AAM91681.1\| unknown protein [Arabidopsis thaliana] gb\|AEE83024.1\| bromo-adjacent homology (BAH) domain-containing prote	-	-	0.0	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%

Source	Gene names
Sma3	AT4g11560; At3g43990; At4g11560; B1074C08.29; B1147B04.38; GSVIVT00000421001; Os01g0527400; OsI_02248; PHYPADRAFT_170692; PHYPADRAFT_188929; POPTRDRAFT_1066903; POPTRDRAFT_1074031; POPTRDRAFT_817356; T15B3_130; VITISV_000955; VITISV_022194;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3		GO:0006350	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tubby, C-terminal	IPR000007	-	-
Sma3	HMG-I/HMG-Y, DNA-binding, conserved site	IPR000637	-	-
Sma3	Bromo adjacent homology (BAH) domain	IPR001025	-	-
Sma3	Transcription elongation factor S-II, central domain	IPR003618	-	-
Sma3	Transcription elongation factor S-IIM	IPR017890	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G11560.1	bromo-adjacent homology (BAH) domain-containing protein chr4:7000095-7003445 REVERSE LENGTH=587	52%
RefSeq	Arabidopsis thaliana	NP_192893.2	bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002299533.1	predicted protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1G4

Fln msg: W2: There is no M at the beginning, your sequence is longer than subject: 559 - 152

Fln protein: EKEKDKEEERSKGSDEDQGPDLRPIGEPIRKSGRGRGITVHFAAFELDGNRYELEDPVLVTPEEKNEKPYVAIIKDIKQAKDGSLAVVGQWFYRPEEAERKGGGSWQARDARELFYSFHHDEVPAESVMHKCVVHFIPLNKQLPPRTKHPGFIVQKVYDTVARKLWKLTDKDYEDSKQKEIDLLVQKTRKALGELPDVESDEFVPDLEESEMNKRQVRRKTVTPINTFRDEDATGRSEPFGKAETPGSSMNDGQWGNTSEIYTILLNQNVLTGVKSRDRWLEKIMEGVKHICSLNRQIDSLDKMQEDTEVKAVDADGESEEKVHKTAESSEGHQEKITEDSKVDNNILWPEAAVAAITALEKAAYESLGSDNHKYNIKMRQLEFNLKSNAILATRLLKKELEPLRVLNMSPAELKDGLTAEEKTTQEPQELQTMQMADVRCSICTEKKVGVRDIIHVGYGDRYQLECLKCGNSWYASRDSISSLTIESVNPVNPVGTAPGATTKFEEAEKAMVSPRELDKITNGDIGQKEIPAVTPIQDPQTAGDVAPAARDSNPIES*

Protein Length: 560

Fln nts: AGAGAAGGAGAAAGACAAAGAAGAGGAGAGATCGAAGGGTAGCGACGAAGACCAAGGTCCAGACCTGAGACCCATTGGAGAACCCATTAGAAAATCCGGCAGGGGACGAGGCATCACGGTGCATTTTGCTGCATTTGAGCTCGACGGAAATCGATATGAATTGGAGGACCCTGTGTTGGTAACCCCGGAAGAGAAAAATGAGAAGCCATATGTTGCTATAATCAAGGATATAAAGCAGGCAAAAGATGGCTCTCTTGCTGTTGTAGGCCAATGGTTTTACCGGCCCGAGGAAGCTGAAAGGAAAGGAGGAGGAAGCTGGCAAGCACGTGATGCACGTGAACTATTTTATAGTTTCCATCATGATGAAGTGCCTGCAGAATCTGTTATGCACAAATGTGTTGTGCACTTTATTCCACTAAACAAGCAACTTCCTCCCCGCACAAAGCATCCAGGTTTTATTGTGCAAAAGGTTTATGACACAGTTGCGAGAAAACTTTGGAAATTGACTGACAAAGATTATGAAGATTCGAAGCAGAAAGAAATTGATTTGCTAGTGCAAAAAACTCGCAAGGCTTTGGGAGAACTCCCTGATGTTGAGTCAGATGAATTTGTCCCTGATCTAGAGGAGTCTGAAATGAACAAAAGACAGGTTCGAAGGAAGACTGTGACACCTATAAACACATTTAGAGATGAAGATGCAACAGGGAGATCAGAACCGTTTGGAAAAGCAGAAACACCAGGAAGCTCTATGAATGATGGACAGTGGGGAAATACTTCTGAGATTTATACCATTCTGTTGAATCAAAATGTACTAACTGGAGTGAAGTCACGTGATAGATGGTTGGAGAAAATCATGGAAGGGGTGAAGCATATATGCAGTTTAAATAGACAGATAGATTCTCTAGACAAAATGCAAGAAGACACTGAAGTGAAAGCTGTTGATGCAGATGGAGAATCCGAAGAGAAGGTTCATAAGACTGCAGAAAGCTCGGAGGGTCACCAAGAGAAAATAACTGAGGACAGTAAGGTGGACAATAATATTTTGTGGCCTGAGGCAGCTGTTGCAGCAATAACTGCACTTGAGAAGGCAGCTTATGAGAGTTTGGGCTCTGACAATCATAAGTACAATATAAAGATGCGGCAACTTGAGTTTAATCTGAAGAGTAATGCAATATTGGCAACACGTCTGCTAAAGAAAGAGCTGGAACCTTTAAGAGTTTTAAACATGTCACCTGCAGAATTAAAGGATGGTTTAACAGCAGAGGAAAAAACTACTCAAGAGCCTCAGGAGTTACAAACGATGCAGATGGCAGATGTCCGATGTTCAATATGCACGGAGAAGAAGGTTGGCGTGAGAGACATCATCCATGTTGGATATGGGGATCGATATCAGCTGGAGTGCCTGAAGTGTGGGAATTCATGGTACGCGTCCAGAGATTCTATCTCTTCCTTAACGATAGAATCTGTAAACCCTGTTAATCCTGTTGGCACAGCACCAGGGGCAACTACAAAGTTTGAAGAAGCTGAAAAGGCAATGGTGAGCCCACGTGAATTAGATAAGATAACAAATGGTGACATTGGACAGAAGGAAATACCAGCAGTGACACCCATTCAAGATCCTCAGACTGCTGGTGATGTTGCACCTGCAGCCCGTGATTCAAACCCTATAGAGAGCTAA___CTCAATTTTACTGAGGCCACACAACAAACAAATTAGATGATTTGTAGAAAGGATGGTTTGTGAAAATGTAAAGATGGGCAGGCTATTGCTGTATATATTCTTTGTATCGTCTTAGAGTCATGACAGACGGTTATGTCAGCACTGCAGCATCCTGAGTTGTTTTATGTCACAGTTTAGGAAGAAACTTACAAACAAATTAAGGGAGTTTTGCTGCAGGTATTGTAACATGTTATTACTGAAAATCGATTATTAGAACTTTTAATATAAGTATAACAATTAGCTCAGAAGTCGAAATAGATGCACATGGTGTACAGGGAGTGTCTGCATTCAGTTTCTCCTTGTTAATGGTAAGATCAGAGAATTATGATAGGATTTCATGCAGGTTGCTGAACC

Fln Alignment:

Contig577___NEKPYVAIIKDIKQAKDGSLAVVGQWFYRPEEAERKGGGSWQARDARELFYSFHHDEVPAESVMHKCVVHFIPLNKQLPPRTKHPGFIVQKVYDTVARKLWKLTDKDY
A9P1G4_____________NAPPFIGIIRHQVVDEEGDVKLGVNWLYRPADVKLGKGASIEALPPNEVFYSFHQDEISGASLLHPCKIAFLSKGVQLPSGVS--AFVCRRVYDVTSKCLWWLTDRDY

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
118			66	33	0.997452
913	12		87		0.992554
939			10	90	0.90298
1289	11		88		0.923564
1429	11		88		0.923564
1797	15	84			0.999986
1931	9		90		0.999842
1960		11		88	0.999937

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain