SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene568

Length: 1819 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene568

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00400, WD40, WD domain, G-beta repeat	-	-	3.0e-07	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	24%
Sma3	WD-repeat protein, putative	-	-	2.346e-14	-

Source	Gene names
Sma3	At2g32700; At4g32551; GSVIVT00003077001; GSVIVT00016815001; GSVIVT00032588001; GSVIVT00032589001; GSVIVT00033847001; L23H3.30; LOC_Os03g64300; LUG; MtrDRAFT_AC149801g25v2; OJ1293_E04.10; OSIGBa0157K09-H0214G12.8; OSJNBa0033P04.5; OSJNBa0053L11.32; OSJNBa0

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein heterodimerization activity	GO:0046982	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	embryo development	GO:0009790	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3		GO:0016481	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	Single-stranded DNA-binding protein, SSDP	IPR007591	-	-
Sma3	LisH dimerisation motif, subgroup	IPR013720	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G32551.2	-	65%
RefSeq	Arabidopsis thaliana	NP_567896.1	transcriptional corepressor LEUNIG [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002324837.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPC1

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 429 - 314

Fln protein: MMVPSPSANSTGPGKDASKSQTARKRKQPGSSSGPAISSGTVNNAGPSQSSAPSTPSTQTPGDVLSMAGALQHSASSSKPLLMYGSDGTLASPSNQLVDMDRFGEDGSLDDNVESFLHDDTDLRDPAGRCMDVTKGFSFSEFGCLRASTSKVVCCHFSSDGKLLASAGHEKKAVLWNMETLGVESTLEEHNLLITDVRFSPNSARLATSSFDKTVRVWDADNPSYSLRTFTGHLGTVMSLDFHPNNDLLCSCDGENEMRYWSVNQGICTRTFKGGMSQVRFQTGAGRLLAAAAENVVSIFDVESEHRLHSLQRHTKPVHSVCWDTSGEYLASVSEDSVRVWSFRSGKEGECVHELSCSGNKFHSCVFHPSYPKLLVIGCYQSLELWNMAENRSMTLPAHDGLIAALAVSNATGMVASASHDKCVKLWK*

Protein Length: 430

Fln nts: CAGCGGCAACAGCAGCAGCAACAGCATCTTGCACAACAAGCCCAGTCAACACAGCAGTCTGAAGTGGCCAATCCTCATCAACAGCAGGATAAGAGTGGAGCTGCACTTACAATTGATAGCAGCCTGTCAAACTCATTTCGTGGAAATGATCAGGTATATAGT_-_ATGATGGTGCCAAGTCCTAGTGCCAACAGTACCGGTCCAGGAAAGGATGCCTCCAAGAGTCAAACTGCAAGAAAAAGGAAGCAACCTGGTTCCTCTTCCGGTCCTGCAATTAGTTCTGGAACAGTGAATAATGCTGGCCCTTCCCAAAGTTCTGCACCCTCAACGCCATCTACTCAGACACCTGGTGATGTGTTGTCTATGGCGGGTGCATTGCAGCACAGTGCTAGCTCATCAAAGCCTCTACTTATGTATGGATCAGATGGGACACTTGCTTCCCCATCGAACCAATTGGTTGATATGGATCGCTTTGGGGAGGATGGATCGTTGGATGACAATGTGGAGTCATTTTTGCATGATGATACAGATCTAAGAGATCCAGCTGGGAGATGCATGGATGTCACTAAAGGGTTCTCCTTTAGTGAGTTTGGTTGTCTTCGAGCTAGTACGAGTAAAGTTGTATGCTGCCACTTCTCTTCTGATGGTAAATTACTAGCCAGTGCTGGACATGAGAAGAAGGCAGTGCTGTGGAATATGGAGACACTGGGAGTTGAGAGTACCCTTGAAGAGCATAACTTATTAATTACTGATGTGCGTTTCAGTCCCAACTCAGCTCGCTTGGCGACATCATCATTCGATAAAACAGTCAGGGTTTGGGATGCAGATAATCCAAGCTATTCATTGAGAACGTTTACTGGTCATTTAGGAACTGTTATGTCTCTTGATTTCCATCCAAACAATGATCTTCTCTGCTCTTGTGATGGAGAAAATGAAATGCGTTATTGGAGTGTTAATCAGGGCATTTGCACAAGAACTTTTAAGGGTGGTATGAGTCAAGTCCGATTTCAAACAGGAGCTGGTAGACTTCTTGCAGCTGCTGCAGAAAATGTTGTATCAATTTTTGATGTTGAGAGTGAGCACCGTTTGCATTCTTTACAGAGGCATACAAAGCCTGTACACTCAGTTTGCTGGGATACAAGTGGAGAATATTTGGCGTCTGTAAGTGAGGATTCTGTTAGGGTATGGTCTTTTCGTTCTGGAAAAGAAGGTGAATGTGTACATGAACTGAGCTGTAGTGGAAATAAATTCCATTCATGTGTCTTTCATCCAAGCTATCCAAAACTTTTGGTAATTGGATGCTATCAGTCATTGGAGCTATGGAATATGGCAGAAAACAGGAGTATGACCCTCCCTGCACACGATGGCCTCATAGCCGCATTGGCAGTTTCCAATGCAACTGGCATGGTTGCTTCTGCGAGTCATGATAAATGTGTAAAATTGTGGAAGTGAATGGCCTGATATAAATCAAAAAACCTTTATTCCCAGGTTGTTGGTTGTTAATGCAATCGTTTTGATCAGAACAATGGTGAGCCTCACATATTTGTTGCTTATTTTGTTTTTAGAGTAATAATTACTCTAATTATCTGTAAATTAATAATCTTCCATAATTTATATGTAAATTTCCTGCCTGCCAACATTTTTTTTCTTCTGAAAATTCATTTCTTAAAGTGCATTGTCTCTTGGAGATTTGCATCTAATCAGTTGTTCCTGTGTTAGTGTTTTACTCTAGAGGTTTTAGTTGTGATTCTTGATCCTCGTAGAGTTGATACTAGATGTAATTGCATACTTTGAGCAAGAAGCCTGCATGTGGCTTTTCCTG

Fln Alignment:

Contig568___MAGALQHSASSSKPLLMYGSDGTLASPSNQLVDMDRFGEDGSLDDNVESFLHDDTDLRDPAGRCMDVTKGFSFSEFGCLRASTSKVVCCHFSSDGKLLASAGHEKKAVLWNMETLGVESTLEEHNLLITDVRFSPNSARLATSSFDKTVRVWDADNPSYSLRTFTGHLGTVMSLDFHPNNDLLCSCDGENEMRYWSVNQGICTRTF----KGGMSQVRFQTGAGRLLAAAAENVVSIFDVESEHRLHSLQRHTKP---VHSVCWDTSGEYLASVSEDS-VRVWSFRS
A9NPC1_____________MASEAQGSGNSFKPYKLKH----ILTGHKRAVSSVKFSADGKLLGSASA---------DKSVRIWSAGDGSAKRE---LQGHAEGVSDMAWSSDSHYVCSASDDKTLRIWDVHTGDCIKTLKGHTNYVFCVNFNPQSNLIVSGSFDETVRIWDV-RTGKCLKVLPAHSDPVTAVHFNRDGSLIVSSSYDGLCRIWDSATGHCLKTLIDDENPPVSFVNFSPNGKFILAGTLDNTLRLWNFATGKFLKTYTGHVNSKYCISSTFSVTNGKYIVSGSEDNCVYLWDLQA

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
596			12	87	0.992554
616	12		87		0.992554
690		11	88		0.923564
761	11		88		0.923564
1776	75		25		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain