SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene567

Length: 1763 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene567 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	triacylglycerol lipase 1 [Arabidopsis thaliana] sp\|Q71DJ5.1\|LIP1_ARATH RecName: Full=Triacylglycerol lipase 1; Flags: Precursor gb\|AAN77143.1\| putative triacylglycerol/steryl ester hydrolase [Arabidopsis thaliana] gb\|ABF58965.1\| At2g15230 [Arabidopsis tha	-	-	0.0	59%
FL-Next	sp=Triacylglycerol lipase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	59%
Sma3	Triacylglycerol lipase 2, putative	-	-	4.879e-17	-

Source	ECs	Term	Type	e value	Identity
Sma3	Triacylglycerol lipase.	EC:3.1.1.3	-	4.593e-26	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glycerolipid metabolism	00561		4.593e-26	%
Sma3	Metabolic pathways	01100		4.593e-26	%

Source	Gene names
Sma3	At2g15230; At5g14180; F15A23.3; GSVIVT00007695001; GSVIVT00020534001; GSVIVT00025961001; GSVIVT00025964001; GSVIVT00025968001; LIP1; LIP2; MUA22.18; MUA22.19; OJ1770_H02.28; OJ1789_C07.7; OSJNBa0094P09.4; Os08g0529800; Os09g0103100; OsI_15191; OsI_23815;

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	extracellular space	GO:0005615	Cellular Component	-
Sma3	triglyceride lipase activity	GO:0004806	Molecular Function	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3	lipid catabolic process	GO:0016042	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Partial AB-hydrolase lipase domain	IPR006693	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G15230.1	ATLIP1, LIP1 lipase 1 chr2:6612666-6615204 FORWARD LENGTH=393	59%
RefSeq	Arabidopsis thaliana	NP_179126.2	triacylglycerol lipase 1 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002313877.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q71DJ5

Fln msg:

Fln protein: MEISKRNSSSLFIIFCLIQAINRVYAREVDDEGLCSQLIRPMGYPCTEFVVGTEDGFLLGVQRIPYGIHDSGIVKVGSRPPVFLQHGLFQGGDTWFQNSREQSLGFILADSGFDVWVGNVRGTRWSHGHVSLSEHSKAFWDWSWEELAGYDLPVMIEFIYSVTESKVFYVGHSQGTIMAFAAFTQPEVVNMVAAAALLSPISYLNHLTSSFARAAVDLHLDQIMNSMGLHQINFRSNMAVQLMDYVCASGGINCSDLLTTITGPNCCFNNSRVDFYLEYEPHPSSTKNIRHLFQMIRKGTFAKYDYGPWGNLKHYGSLNPMDYNLSQIPKSLPLWMAYGGKDALGDLVDVNHTLAQLNSKPVLVYLDSYAHLDFVLSVRAKADLYDSMVDFFKSQSRELFE*

Protein Length: 403

Fln nts: TCTAGTAGTACGCGGGGTTCCATCTGCGATAATGAATCAATGTCAATGTGTTTTTTGGCTTCGCGTATTCGCAAGACGTGGGAAGCCAAAAGCCAGAGTGAGTCGCTTATAGAACAGGAACATTGCAGGTGCTTGGCACCTTCGAATTCATAGCTCCTCTTTCATTCAATTTTTTTTGCCGTATCCAGTTCCAGGAGCCTCAAT_-_ATGGAGATATCAAAGAGGAATTCCTCATCTCTGTTCATAATTTTTTGCCTTATTCAAGCTATCAACAGGGTGTACGCAAGGGAAGTTGATGATGAAGGTCTGTGCTCTCAGTTAATCCGACCTATGGGTTACCCTTGTACTGAATTCGTGGTGGGTACAGAGGATGGTTTCTTACTAGGAGTGCAGCGTATTCCTTATGGGATCCATGATAGCGGTATTGTAAAAGTTGGCTCAAGGCCTCCAGTGTTTTTACAACATGGACTATTTCAGGGCGGGGACACTTGGTTTCAGAATTCCAGAGAACAGTCTCTAGGATTCATATTAGCAGATTCTGGATTTGATGTTTGGGTTGGAAATGTACGTGGTACACGTTGGAGTCATGGTCATGTCTCTCTTTCAGAACATAGCAAGGCCTTCTGGGATTGGAGTTGGGAAGAATTGGCAGGTTATGATCTTCCAGTTATGATTGAGTTTATATATTCTGTGACAGAGTCGAAAGTATTTTATGTGGGACATTCACAGGGTACTATTATGGCATTTGCTGCTTTTACTCAACCAGAGGTGGTAAATATGGTTGCGGCCGCTGCTCTATTGAGTCCCATATCCTATTTGAATCATCTCACTTCTAGTTTTGCCCGTGCAGCTGTAGACTTGCACCTTGATCAGATTATGAATTCTATGGGACTGCATCAAATCAATTTTAGAAGTAATATGGCTGTCCAGCTTATGGACTATGTATGTGCTTCTGGAGGAATAAACTGCAGCGACCTGCTTACAACTATCACTGGTCCAAATTGTTGTTTCAACAACTCACGCGTTGATTTCTATCTGGAGTATGAGCCTCATCCATCATCTACAAAGAACATTAGACATCTTTTTCAAATGATTCGGAAGGGAACATTTGCAAAGTATGACTATGGACCCTGGGGGAATTTGAAACACTATGGAAGCTTAAATCCGATGGATTATAATCTCTCTCAGATCCCAAAATCACTTCCTTTGTGGATGGCATATGGAGGGAAAGATGCTTTGGGAGATTTGGTGGATGTGAACCACACACTTGCCCAATTGAATAGTAAGCCAGTGTTGGTCTATTTGGACTCCTATGCTCACCTTGATTTTGTTCTGAGTGTACGGGCAAAAGCAGATTTGTATGATTCCATGGTAGACTTCTTTAAATCCCAGTCAAGAGAATTGTTTGAGTAG___TTTGAACACAGAATCAGAAATTTAGCCAATGTAAAGAACCTATAGACCTATTGCGATCTTCATTAAGAGCTTACAGCTTGTTTCTCTACTAAGTGCAATGTCAAGGATTGTATCACTGTACTATATTTTGTATATGGATGTGTATCATATGGAGCATTTCTTGTATATAGACATGTCCATAAATGTATAGATAAAAACACACTCGGATGCCTACGAGATCAAGGTTACTTTTTAGTGATATATGAGTTGAGATTTTATATTGGAAAGGGAAAAACAAATGTACAATGTGCACTATACCCTATTACATTTGTATTCAAACTTCAATAAGAGCATTGTGAGTGATTCAATTGTAG

Fln Alignment:

Contig567___LCSQLIRPMGYPCTEFVVGTEDGFLLGVQRIPYGIHDSGIVKVGSRPPVFLQHGLFQGGDTWFQNSREQSLGFILADSGFDVWVGNVRGTRWSHGHVSLSEHSKAFWDWSWEELAGYDLPVMIEFIYSVTESKVFYVGHSQGTIMAFAAFTQPEVVNMVAAAALLSPISYLNHLTSSFARAAVDLHLDQIMNSMGLHQINFRSNMAVQLMDYVCASGGINCSDLLTTITGPNCCFNNSRVDFYLEYEPHPSSTKNIRHLFQMIRKGTFAKYDYGPWGNLKHYGSLNPMDYNLSQIPKSLPLWMAYGGKDALGDLVDVNHTLAQLNSKPVLVYLDSYAHLDFVLSVRAKADLYDSMVDFFKSQ
Q71DJ5_____________LCADLIHPANYSCTEHSIQTKDGYILALQRVA-----SLGPRLQSGPPVLLQHGLFMAGDVWFLNSPKESLGFILADHGFDVWVGNVRGTRYSYGHVTLSDTDKEFWDWSWQDLAMYDLAEMIQYLYSISNSKIFLVGHSQGTIMSFAALTQPHVAEMVEAAALLCPISYLDHVTAPLVERMVFMHLDQMVVALGLHQINFRSDMLVKLVDSLC-EGHMDCTDFLTSITGTNCCFNASKIEYYLDYEPHPSSVKNIRHLFQMIRKGTFAQYDYGYFKNLRTYGLSKPPEFILSHIPASLPMWMGYGGTDGLADVTDVEHTLAELPSSPELLYLEDYGHIDFVLGSSAKEDVYKHMIQFFRAK

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
232	87		12		0.992554
1095		85		14	0.993533
1326		16		83	0.994512
1485		25	75		0.996473
1486		25		75	0.996473
1488		75		25	0.996473
1511	33		66		0.997452
1638	14		85		0.993533
1643	14		85		0.993533
1692		16	83		0.994512
1694		16	83		0.994512
1695	83	16			0.994512
1700		20	80		0.995493
1702		20	80		0.995493
1703	80	20			0.995493
1705			80	20	0.995493
1731	66	33			0.997452
1732		33		66	0.997452
1733		33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain