SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene564

Length: 3134 nt

UniGene Fasta

>sp_v3.0_unigene564
ATAGTGATGTTTAGATAGAAATTTAGTTCAGTCTCAAGATTAAAGGCTCTGGTGCGTCAAAGCCTTCGCGGAATAATCAGGAACATGTCGTAGATTTTTTCGGAGTTCTAGCTGTATCGGCGGGAGTTGAGGGCAGATTAACCTGTCCAGTATAGATTTCGGTCGACGCGAAGTATTTCATGGCGCCGGAAGCGGTGAATTAAGAGCGAATGTGTTTAATTATCATTTCCACGTCATCAGAAGCTAGAGATGAAGCAAATAAATTTCCGATTTAGTAAAAGATAACTTATGGTTATTGTACCAGTTGCCGTGGGAACGGAAACGGTCATTAATGATATTGTTTCCTGGCTGGAGCTGTGAATGCCGTAGTAAACGATGAAAAGGTTTCCTTGTTTACTTACCAGTCAGTCATCTACTAGGTCAAAAGACGGCAGGCATCTACCTGGCTGCTGGCTTTGCATTGATTGTGCTTGTCCTGTCAAATATTTATTTATTTCAACTTGTTGCCACATCAGTCTGAGTCGGTAGAAGTTTATAGTTTATAAAGCTTTGGATCGATTCAGCCGACCAAGCGATTCTGAGTACGAATTGTGCTGTTGTTTTTCATTTTGGCGAGAAGCGGGGATTTGACCGTAACACAGTTCCGCCTGAGTAAAGACAGCTGTCCTTGAAAGCTTTTCTAAAATTGTGTTGGGAGAGCTTTTATTTTGTTTAATCGCAGCTTTAAAGTGAAGAATTCTACTAATTTCGGATCCGGAACGGTCCGGGGGGACATCTCTTGCTTTTCCAGATTGCTAAGCTTCAACAGGGAAATTTATTTTACTTCTGTGATCCGGATTCTCGAATTCCCTGCCGAAACATAGGTTTTTGTCACTGCTATTTTGGTTTCGCAATCATGTGCTATTTTGGTTTCGCAATCATGTGCGCGGATCTATAAGATCTATTCAGCCTTGACTTCAGATCCTTCAGGCTGGAAGTCTTGGGCAAAAATTACAAATTGGAGCTCATTCAGTGAGCCTGGTCGCAGGCAAGCAATATATACAATTTAGCTCAAACGAATAAACAATAATTTGTTGAAAGTGATGAGCGGAGTTCAATCTTTAAACGGATGCCATTATCTTTATAGAGTTTAGAGTGGCACTGAGAGATTGAGCGGAATGGAGGCACACCAAGGGAGAACAGGATTGCAGTTTGAGACGGTCAAGGTTATGGAAGATCATACAGATCAGGGCGGTCGGTCAGGAGTCGATACGGCTTCGTCCACGTGTGATATTAACATTTCTTCTCCTGTCACTAGACAGAAGGTTGCTGCAGCCAAGCAGTTCATAGAGAATCATTATAAAAACCATCTCAAGAGCCTTCAAGAGCGCAAAGAAAGGCGTCGAACTTTGGAGAAAACATTGCAAGAGGCACAAGTTTCGGAAGAAGAGCAAGTAGAAATGATAAAAAACCTAGAGCGTAAGGAAACTGAATACATGCGACTGCAAAGACATAAAGTAGGTGTTGATGACTTTGAGCCATTAACAATCATTGGTAGAGGAGCGTTTGGTGAGGTTAGGCTTTGTCGTGCAAAGTCTACTCAGCAAATCTATGCAATGAAAAAGCTGAAGAAGTCAGAGATGCTTAGTCGTGGGCAGGTGGAACACGTGAGGTCTGAGAGGAATCTTCTTGCAGAAGTTGATAGTCGGTGCATTGTGAAACTTTTTTATTCTTTCCAGGACACAGAATACTTGTACCTTATAATGGAATACCTGCCTGGTGGTGATATCATGACTCTTCTTATAAGAGAAGAAATTTTGTCTGAGGATGTTGCACGTTTCTATATTGCAGAGAGTATCCTGGCTATTCACTCGATACATAAACATAACTATATTCACAGGGACATCAAGCCTGATAACTTGTTACTGGATAAAGATGGACACATGAAACTGACGGATTTTGGATTATGCAAGCCGCTGGACTATAGCACATTGTCAACTCTTCGTGAAGATGAACAATTTATAGATGATGAACTGCACACATCAATGGAAATGGAGGGACGTTCAGATTTAAGAGGGCGTAACAGGGGCCTTTGGTTAACTCAAAAGGAGCAGATTCAGCATTGGAAAAGGAATCGGCGGACACTGGCTTATTCCACTGTCGGCACACCTGATTATATGGCACCCGAAGTGCTGCTAAAGAAGGGCTATGGTATGGAGTGTGATTGGTGGTCCTTAGGTGCAATCATGTATGAGATGCTTGTGGGATACCCTCCTTTCTATTCTGATGACCCCCGAATCACATGTAGGAAGATCATTAATTGGAAGACGTGCTTGAAATTCCCTGAAGTCCAGATATCCACTGAAGCAATAGATTTGATTTCTAGATTGCTATGTGACGTGGACCAAAGGTTGGGCTCAAGAGGAGTGGATGAAATAAAGGCACACCCATGGTTTAGAGGAATTCAGTGGGACAAATTGTATGAGATGGAAGCTGCATTCAAACCTGTTGTCAATGGGGAGTTAGATACCCAAAACTTCGAGAAATATGATGAGGTTGAGCCTCCGCAGCTGGTGCCATCAAGATCTGGACCTTGGCGTAAGATGTTAACATCAAAGGACACACATTTTGTTGGTTATACTTATAAGGATCGTGACATGTTTAAAGCAATGCAAGGACCATCCGATATGAAACCAAAGAGCTCGCGAAAGAAACCTTCTCTCGTCTCCTTGTTTGATAGAATTGACTTGGACGAAAGTAAGAGTGCAAATGATGACATGGTGGAAACGACAAGGGGAATTCCTCGACCATGAACTATTTTGTTGTGTATACTTAGTTGAATCCCTTTGGAATGTCCCTTGTTTTTGTTGGGAAGCAATAAAATTCTCTCATAATCCCATTTCTTAATAAATCATTTTGTGATATCAAAGTTGGCATGAGATGAAAAATAAGAAATGGCATTGGGGGTGTAATATTTGTTCAAGAATGCTTTAGTGCAGATGAACTTAAAATTCATTCAATCATATCAAATTGCCTGTAATACTTATGAAGCATGTTTATTTTAAATTCATATATATATATATCTCTTGAAATATGAGGTTTTCCAAAATCGCTCAAAATAGATACATGGTGACATGTGGGCTTAATGTCATCTT

Ace file of the UniGene sp_v3.0_unigene564

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein kinase family protein [Arabidopsis thaliana] gb\|AED91462.1\| Protein kinase family protein [Arabidopsis thaliana]	-	-	0.0	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%
Sma3	Protein kinase	-	-	1.255e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Protein kinase C.	EC:2.7.11.13	-	2.801e-13	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Phosphatidylinositol signaling system	04070		2.801e-13	%

Source	Gene names
Sma3	AT3G23310; AT4G33080; AT4g14350; AT4g33080; At2g19400; At2g19400/F27F23.20; At2g20470; At3g23310; At4g14350; At4g33080; At5g09890; AtNdr1; CHLREDRAFT_115025; CHLREDRAFT_116419; F21M11.15; F4I10.10; GSVIVT00008775001; GSVIVT00014640001; GSVIVT00014822001;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	phragmoplast	GO:0009524	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	AGC-kinase, C-terminal	IPR000961	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Protein kinase, C-terminal	IPR017892	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G09890.2	Protein kinase family protein chr5:3085810-3088842 REVERSE LENGTH=516	70%
RefSeq	Arabidopsis thaliana	NP_001031863.1	Protein kinase family protein [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002301182.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPF9

Fln msg: your sequence is longer than subject: 545 - 385

Fln protein: MEAHQGRTGLQFETVKVMEDHTDQGGRSGVDTASSTCDINISSPVTRQKVAAAKQFIENHYKNHLKSLQERKERRRTLEKTLQEAQVSEEEQVEMIKNLERKETEYMRLQRHKVGVDDFEPLTIIGRGAFGEVRLCRAKSTQQIYAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLFYSFQDTEYLYLIMEYLPGGDIMTLLIREEILSEDVARFYIAESILAIHSIHKHNYIHRDIKPDNLLLDKDGHMKLTDFGLCKPLDYSTLSTLREDEQFIDDELHTSMEMEGRSDLRGRNRGLWLTQKEQIQHWKRNRRTLAYSTVGTPDYMAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPRITCRKIINWKTCLKFPEVQISTEAIDLISRLLCDVDQRLGSRGVDEIKAHPWFRGIQWDKLYEMEAAFKPVVNGELDTQNFEKYDEVEPPQLVPSRSGPWRKMLTSKDTHFVGYTYKDRDMFKAMQGPSDMKPKSSRKKPSLVSLFDRIDLDESKSANDDMVETTRGIPRP*

Protein Length: 546

Fln nts: ATAGTGATGTTTAGATAGAAATTTAGTTCAGTCTCAAGATTAAAGGCTCTGGTGCGTCAAAGCCTTCGCGGAATAATCAGGAACATGTCGTAGATTTTTTCGGAGTTCTAGCTGTATCGGCGGGAGTTGAGGGCAGATTAACCTGTCCAGTATAGATTTCGGTCGACGCGAAGTATTTCATGGCGCCGGAAGCGGTGAATTAAGAGCGAATGTGTTTAATTATCATTTCCACGTCATCAGAAGCTAGAGATGAAGCAAATAAATTTCCGATTTAGTAAAAGATAACTTATGGTTATTGTACCAGTTGCCGTGGGAACGGAAACGGTCATTAATGATATTGTTTCCTGGCTGGAGCTGTGAATGCCGTAGTAAACGATGAAAAGGTTTCCTTGTTTACTTACCAGTCAGTCATCTACTAGGTCAAAAGACGGCAGGCATCTACCTGGCTGCTGGCTTTGCATTGATTGTGCTTGTCCTGTCAAATATTTATTTATTTCAACTTGTTGCCACATCAGTCTGAGTCGGTAGAAGTTTATAGTTTATAAAGCTTTGGATCGATTCAGCCGACCAAGCGATTCTGAGTACGAATTGTGCTGTTGTTTTTCATTTTGGCGAGAAGCGGGGATTTGACCGTAACACAGTTCCGCCTGAGTAAAGACAGCTGTCCTTGAAAGCTTTTCTAAAATTGTGTTGGGAGAGCTTTTATTTTGTTTAATCGCAGCTTTAAAGTGAAGAATTCTACTAATTTCGGATCCGGAACGGTCCGGGGGGACATCTCTTGCTTTTCCAGATTGCTAAGCTTCAACAGGGAAATTTATTTTACTTCTGTGATCCGGATTCTCGAATTCCCTGCCGAAACATAGGTTTTTGTCACTGCTATTTTGGTTTCGCAATCATGTGCTATTTTGGTTTCGCAATCATGTGCGCGGATCTATAAGATCTATTCAGCCTTGACTTCAGATCCTTCAGGCTGGAAGTCTTGGGCAAAAATTACAAATTGGAGCTCATTCAGTGAGCCTGGTCGCAGGCAAGCAATATATACAATTTAGCTCAAACGAATAAACAATAATTTGTTGAAAGTGATGAGCGGAGTTCAATCTTTAAACGGATGCCATTATCTTTATAGAGTTTAGAGTGGCACTGAGAGATTGAGCGGA_-_ATGGAGGCACACCAAGGGAGAACAGGATTGCAGTTTGAGACGGTCAAGGTTATGGAAGATCATACAGATCAGGGCGGTCGGTCAGGAGTCGATACGGCTTCGTCCACGTGTGATATTAACATTTCTTCTCCTGTCACTAGACAGAAGGTTGCTGCAGCCAAGCAGTTCATAGAGAATCATTATAAAAACCATCTCAAGAGCCTTCAAGAGCGCAAAGAAAGGCGTCGAACTTTGGAGAAAACATTGCAAGAGGCACAAGTTTCGGAAGAAGAGCAAGTAGAAATGATAAAAAACCTAGAGCGTAAGGAAACTGAATACATGCGACTGCAAAGACATAAAGTAGGTGTTGATGACTTTGAGCCATTAACAATCATTGGTAGAGGAGCGTTTGGTGAGGTTAGGCTTTGTCGTGCAAAGTCTACTCAGCAAATCTATGCAATGAAAAAGCTGAAGAAGTCAGAGATGCTTAGTCGTGGGCAGGTGGAACACGTGAGGTCTGAGAGGAATCTTCTTGCAGAAGTTGATAGTCGGTGCATTGTGAAACTTTTTTATTCTTTCCAGGACACAGAATACTTGTACCTTATAATGGAATACCTGCCTGGTGGTGATATCATGACTCTTCTTATAAGAGAAGAAATTTTGTCTGAGGATGTTGCACGTTTCTATATTGCAGAGAGTATCCTGGCTATTCACTCGATACATAAACATAACTATATTCACAGGGACATCAAGCCTGATAACTTGTTACTGGATAAAGATGGACACATGAAACTGACGGATTTTGGATTATGCAAGCCGCTGGACTATAGCACATTGTCAACTCTTCGTGAAGATGAACAATTTATAGATGATGAACTGCACACATCAATGGAAATGGAGGGACGTTCAGATTTAAGAGGGCGTAACAGGGGCCTTTGGTTAACTCAAAAGGAGCAGATTCAGCATTGGAAAAGGAATCGGCGGACACTGGCTTATTCCACTGTCGGCACACCTGATTATATGGCACCCGAAGTGCTGCTAAAGAAGGGCTATGGTATGGAGTGTGATTGGTGGTCCTTAGGTGCAATCATGTATGAGATGCTTGTGGGATACCCTCCTTTCTATTCTGATGACCCCCGAATCACATGTAGGAAGATCATTAATTGGAAGACGTGCTTGAAATTCCCTGAAGTCCAGATATCCACTGAAGCAATAGATTTGATTTCTAGATTGCTATGTGACGTGGACCAAAGGTTGGGCTCAAGAGGAGTGGATGAAATAAAGGCACACCCATGGTTTAGAGGAATTCAGTGGGACAAATTGTATGAGATGGAAGCTGCATTCAAACCTGTTGTCAATGGGGAGTTAGATACCCAAAACTTCGAGAAATATGATGAGGTTGAGCCTCCGCAGCTGGTGCCATCAAGATCTGGACCTTGGCGTAAGATGTTAACATCAAAGGACACACATTTTGTTGGTTATACTTATAAGGATCGTGACATGTTTAAAGCAATGCAAGGACCATCCGATATGAAACCAAAGAGCTCGCGAAAGAAACCTTCTCTCGTCTCCTTGTTTGATAGAATTGACTTGGACGAAAGTAAGAGTGCAAATGATGACATGGTGGAAACGACAAGGGGAATTCCTCGACCATGA___ACTATTTTGTTGTGTATACTTAGTTGAATCCCTTTGGAATGTCCCTTGTTTTTGTTGGGAAGCAATAAAATTCTCTCATAATCCCATTTCTTAATAAATCATTTTGTGATATCAAAGTTGGCATGAGATGAAAAATAAGAAATGGCATTGGGGGTGTAATATTTGTTCAAGAATGCTTTAGTGCAGATGAACTTAAAATTCATTCAATCATATCAAATTGCCTGTAATACTTATGAAGCATGTTTATTTTAAATTCATATATATATATATCTCTTGAAATATGAGGTTTTCCAAAATCGCTCAAAATAGATACATGGTGACATGTGGGCTTAATGTCATCTT

Fln Alignment:

Contig564___VDDFEPLTIIGRGAFGEVRLCRAKSTQQIYAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLFYSFQDTEYLYLIMEYLPGGDIMTLLIREEI--LSEDVARFYIAESILAIHSIHKHNYIHRDIKPDNLLLDKDGHMKLTDF----------------------GLCKPLDYSTLSTLREDEQFIDDELHTSMEMEGRSDLRGRNRGLWLTQKEQIQHWKRNRRTLAYSTVGTPDYMAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPRITCRKIINWKTCLKFPEV-QISTEAIDLISRLLC-DVDQRLG-SRGVDEIKAHPWFRGIQWDKL-YEMEAAFKP
A9NPF9_____________VDEFTPIRTLGHGDMGTVYLAKHMTSGKPVAMKVMSKELMQKKRSHKRAWMEKEILQKLDHPFLPKLFTKFESKNHSFLLMSYCSGGDLNTLRQRQKDRKFSESAARFYAAEVVLALEYLHQHGILYRDLKPENILLQADGHIMITDFDLSLMINNSQESRAKDSYRDQNGSCKKKTKSFLAKLNPGHVGAKDCMNASAMITTKQDDSAKE-----TSFCHLDGRKESVYEQAHSFVGTEEYVAPEILWGKGHGIAVDWWAFGVLLYEMVYGKTPFKGCNRKETFYNIL----CKEPPQLSEHSSPLKDLLRRLLVKEPTLRLGFNSGAQEIKNHEFFEGVRWDELEYVSRPPFVP

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
1320			85	14	0.993533
1321		85	14		0.993533
1322	85			14	0.993533
1422	10		90		0.90298
1433	90		10		0.90298
1554		20	80		0.995493
1555	20		80		0.995493
1957	27		72		1.0
2161	11		88		0.923564
2165		88		11	0.923564
2166		88		11	0.923564
2443	88		11		0.923564
2481		11		88	0.923564

SSRs (tot: 2)

Start position	End position	Sequence	Length
484	496	TATT TATT TATT T	13
3049	3062	AT AT AT AT AT AT AT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain