SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene534

Length: 2324 nt

UniGene Fasta

>sp_v3.0_unigene534
AGAGAAGTACAACTCTTTTCTGTCTCAGAAAAAATGGACCAGGCATATGGCATGCTGGAAGATGTCTTGAACTGTGAAAGAAAGTGGATATACAATGAGGGCATAGAAAAGTTCTTTGTTCTATGCATCCCGGGGGAAGGCATCTCCAGTGGCACTTTTTGGTGCTGGTGCAGAAATTAAACATCTTGAATTGGAGGGTAAAAGTTTAAGCGTTGAAGTTTGTCATCCAAATGCACAATCTCTTGATGATAGAGTGCTCTTAGTAATGTTTGAAAAATGTGCTGGTAGAATAGCAGGTTTCCATAAATACTTGGTGGCAGGACAAGGAGAAGTAACTGGGAAATGGGGTACAATAACATTTTTCTCTCCAGAAGCAGCTCAAACGGCAGTGCATCAGCTCAGTAATGTAGAACTAGGAGGCTCATTTTTGTCTGTATATCCTTTGAATGTATCTCCTGTAATGGACCATAAGAGATCTGGGTTTCCAGCTGTCAAAGCAATGCTCAGATGGCCTCGGAGACAAAGCAAGGGCTTGGCTGTCATTCGATGTGATCCTGATGATGTTGATCGAATTACATTAGCTTGTGCAGGCATGCTCATAGGAAGATCTCGTGTGCATTGTAAACGTGGCAAATCCGATGATTCTGTTTTTATGTCTGGTCTTGATCCAGAGGTTACCGAAGACCAACTAAGGCTGGCCTTAGGGTATGTTCCAGTCCATAAAATTATGGATGTTTTCATTATTCGACTTCCTGCTGGTCTGCAGCCTACAAATTCGCTTTGTAAGGCAGCACTATTACAGGAGCTTACTGTATTTGTCCCTAAAGACAAGTGTGAGGTAATTGTATACAATTCAGACACCAAGGATTTCTATATGCGAGCTCTAGTTACATTTGATGGTAGTGTACATTTGAGGGCAGCACGGGCTCTGTCTCATCTCCAAGGAAAAGTGCTTTCTGTCTGTATGCCTTGGCAAAAGATTACCTGTCAACAAACATATTACAGCACAGTTTTATGTCCTGCCCCAATCTACTCTGTACTAAAGACTGAATTACAGAGTCTGGTCGACTCTTTTCAACAGCCAAATGCAGATGTTAAGCTACAAACCAATGAGACAGAGTATGGATCCTACAGAGTGAAGATATCTTCGAACACAATGGATGCTGTTGTAAAATGTAGATCCTCACTGGAACAGCTACTGAAAGGAAATGTTGTAGCAGATGATAAGTTCGATCCTGCAGCTATACAGCTACTTTTTAACCGTGAGGGGTTTCAGCTTCTAAGATCATTAGAACGGGAGACGGAGACTTGTATAATATTTGAAAGACGCAGTCATAGTATCAAAATTTTTGGTCCAGCCAACAAAAGTGATAAAGCTATTAAAGATCTGGTACATAAATTGATGTTGCTTCATGAAAACAAACATCATCAAATATCTCTTAGAGGGGAAGGGGTACCATATGGGTTGATGAAGGAAATTGTCAAAAGATTTGGTGTGGAGCTAGCTGGATTTAAAGCGTGCATTCCAGATGCAGAATTTATTCTTGATACACGTCGTCATGTTTTGTCTGTTCATGGCAGTAGAGAGTCAAAAATTAAAGCTGACAATGTTGTTGCTGAAACGGCAAATAGTATCAAGGGGATTCATAATCATATGCTAAAAGAAGTTGATGAAAGTGGGAATGCTTGTCCCATCTGCTTCTGTGATATCGAAGACTGCTACAGACTCGAAGGATGTGGGCATGCCTTCTGCAGATCATGCCTAGTTGAGCAGTGTAACTCAGCCATCCGTCATCATGAGGGATTTCCTCTTGTTTGTGCTCGTGAAGATTGCAACCATTTGTTCTTAGTTGCTGATCTAAAATCCTTGGTCTCCAGTGAGGCACTGGATGACTTATTTAGAGCTTCTCTCGGGGCATTTGTAGCTTCGAGCAAAGGTACCTACAGATTCTGCACCACCCCAGATTGCCCATCAATATATGAGGTGTCAACTTCTGGTAGACTCTTTGTTTGTGGCAGTTGTTCGGTGGAGTTGTGTACAACCTGTCATCTAGAGTATCATCCGTACCTGTCATGTGAAGACTATAGAGAATTCAAGCAAGATCCCGATGCCTCTCTGAAAGAGTGGTGCAAAGGCAAAGAGGATGTTAAAAGGTGTCCTGGTTGTGGGTTCACAATTGAAAAAACTGAAGGTTGCAATCACATCAGTTGTAAGTGTGGTAAACATATTTGCTGGGTATGTGTAGAGTCCTTTGACAGCAGTGACAGTTGTTATAGCCATTTGCGTGCTGTACATGGTGGTTACTAATTGCAAACTCCTTTTT

Ace file of the UniGene sp_v3.0_unigene534

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc finger-related and helicase and IBR domain-containing protein [Arabidopsis thaliana] sp\|P0CE10.1\|Y4102_ARATH RecName: Full=Putative uncharacterized protein At4g01020, chloroplastic; Flags: Precursor gb\|AEE81967.1\| zinc finger-related and helicase and	-	-	0.0	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	27%

Source	Gene names
Sma3	AT4g01020; At4g01020; GSVIVT00011441001; GSVIVT00012065001; GSVIVT00012171001; Os07g0621500; OsI_26907; OsJ_25164; P0594D10.125; POPTRDRAFT_558490; POPTRDRAFT_778228; RCOM_0883870;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	von Willebrand factor, type C	IPR001007	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Zinc finger, C6HC-type	IPR002867	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002307067.1	predicted protein [Populus trichocarpa]	0.0	48%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9Q5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 85 aas, your sequence is longer than subject: 681 - 579

Fln protein: MFEKCAGRIAGFHKYLVAGQGEVTGKWGTITFFSPEAAQTAVHQLSNVELGGSFLSVYPLNVSPVMDHKRSGFPAVKAMLRWPRRQSKGLAVIRCDPDDVDRITLACAGMLIGRSRVHCKRGKSDDSVFMSGLDPEVTEDQLRLALGYVPVHKIMDVFIIRLPAGLQPTNSLCKAALLQELTVFVPKDKCEVIVYNSDTKDFYMRALVTFDGSVHLRAARALSHLQGKVLSVCMPWQKITCQQTYYSTVLCPAPIYSVLKTELQSLVDSFQQPNADVKLQTNETEYGSYRVKISSNTMDAVVKCRSSLEQLLKGNVVADDKFDPAAIQLLFNREGFQLLRSLERETETCIIFERRSHSIKIFGPANKSDKAIKDLVHKLMLLHENKHHQISLRGEGVPYGLMKEIVKRFGVELAGFKACIPDAEFILDTRRHVLSVHGSRESKIKADNVVAETANSIKGIHNHMLKEVDESGNACPICFCDIEDCYRLEGCGHAFCRSCLVEQCNSAIRHHEGFPLVCAREDCNHLFLVADLKSLVSSEALDDLFRASLGAFVASSKGTYRFCTTPDCPSIYEVSTSGRLFVCGSCSVELCTTCHLEYHPYLSCEDYREFKQDPDASLKEWCKGKEDVKRCPGCGFTIEKTEGCNHISCKCGKHICWVCVESFDSSDSCYSHLRAVHGGY*

Protein Length: 682

Fln nts: AGAGAAGTACAACTCTTTTCTGTCTCAGAAAAAATGGACCAGGCATATGGCATGCTGGAAGATGTCTTGAACTGTGAAAGAAAGTGGATATACAATGAGGGCATAGAAAAGTTCTTTGTTCTATGCATCCCGGGGGAAGGCATCTCCAGTGGCACTTTTTGGTGCTGGTGCAGAAATTAAACATCTTGAATTGGAGGGTAAAAGTTTAAGCGTTGAAGTTTGTCATCCAAATGCACAATCTCTTGATGATAGAGTGCTCTTAGTA_-_ATGTTTGAAAAATGTGCTGGTAGAATAGCAGGTTTCCATAAATACTTGGTGGCAGGACAAGGAGAAGTAACTGGGAAATGGGGTACAATAACATTTTTCTCTCCAGAAGCAGCTCAAACGGCAGTGCATCAGCTCAGTAATGTAGAACTAGGAGGCTCATTTTTGTCTGTATATCCTTTGAATGTATCTCCTGTAATGGACCATAAGAGATCTGGGTTTCCAGCTGTCAAAGCAATGCTCAGATGGCCTCGGAGACAAAGCAAGGGCTTGGCTGTCATTCGATGTGATCCTGATGATGTTGATCGAATTACATTAGCTTGTGCAGGCATGCTCATAGGAAGATCTCGTGTGCATTGTAAACGTGGCAAATCCGATGATTCTGTTTTTATGTCTGGTCTTGATCCAGAGGTTACCGAAGACCAACTAAGGCTGGCCTTAGGGTATGTTCCAGTCCATAAAATTATGGATGTTTTCATTATTCGACTTCCTGCTGGTCTGCAGCCTACAAATTCGCTTTGTAAGGCAGCACTATTACAGGAGCTTACTGTATTTGTCCCTAAAGACAAGTGTGAGGTAATTGTATACAATTCAGACACCAAGGATTTCTATATGCGAGCTCTAGTTACATTTGATGGTAGTGTACATTTGAGGGCAGCACGGGCTCTGTCTCATCTCCAAGGAAAAGTGCTTTCTGTCTGTATGCCTTGGCAAAAGATTACCTGTCAACAAACATATTACAGCACAGTTTTATGTCCTGCCCCAATCTACTCTGTACTAAAGACTGAATTACAGAGTCTGGTCGACTCTTTTCAACAGCCAAATGCAGATGTTAAGCTACAAACCAATGAGACAGAGTATGGATCCTACAGAGTGAAGATATCTTCGAACACAATGGATGCTGTTGTAAAATGTAGATCCTCACTGGAACAGCTACTGAAAGGAAATGTTGTAGCAGATGATAAGTTCGATCCTGCAGCTATACAGCTACTTTTTAACCGTGAGGGGTTTCAGCTTCTAAGATCATTAGAACGGGAGACGGAGACTTGTATAATATTTGAAAGACGCAGTCATAGTATCAAAATTTTTGGTCCAGCCAACAAAAGTGATAAAGCTATTAAAGATCTGGTACATAAATTGATGTTGCTTCATGAAAACAAACATCATCAAATATCTCTTAGAGGGGAAGGGGTACCATATGGGTTGATGAAGGAAATTGTCAAAAGATTTGGTGTGGAGCTAGCTGGATTTAAAGCGTGCATTCCAGATGCAGAATTTATTCTTGATACACGTCGTCATGTTTTGTCTGTTCATGGCAGTAGAGAGTCAAAAATTAAAGCTGACAATGTTGTTGCTGAAACGGCAAATAGTATCAAGGGGATTCATAATCATATGCTAAAAGAAGTTGATGAAAGTGGGAATGCTTGTCCCATCTGCTTCTGTGATATCGAAGACTGCTACAGACTCGAAGGATGTGGGCATGCCTTCTGCAGATCATGCCTAGTTGAGCAGTGTAACTCAGCCATCCGTCATCATGAGGGATTTCCTCTTGTTTGTGCTCGTGAAGATTGCAACCATTTGTTCTTAGTTGCTGATCTAAAATCCTTGGTCTCCAGTGAGGCACTGGATGACTTATTTAGAGCTTCTCTCGGGGCATTTGTAGCTTCGAGCAAAGGTACCTACAGATTCTGCACCACCCCAGATTGCCCATCAATATATGAGGTGTCAACTTCTGGTAGACTCTTTGTTTGTGGCAGTTGTTCGGTGGAGTTGTGTACAACCTGTCATCTAGAGTATCATCCGTACCTGTCATGTGAAGACTATAGAGAATTCAAGCAAGATCCCGATGCCTCTCTGAAAGAGTGGTGCAAAGGCAAAGAGGATGTTAAAAGGTGTCCTGGTTGTGGGTTCACAATTGAAAAAACTGAAGGTTGCAATCACATCAGTTGTAAGTGTGGTAAACATATTTGCTGGGTATGTGTAGAGTCCTTTGACAGCAGTGACAGTTGTTATAGCCATTTGCGTGCTGTACATGGTGGTTACTAATTGCAAACTCCTTTTT

Fln Alignment:

Contig534___CGHAFCRSCLVEQCNSAIRHHEGFPLVCAREDCNHLFLVADLKSLVSSEALDDLFRASLGAFVASSKGTYRFCTTPDCPSI---------------YEVSTSGRLFVCGSCSVELCTTCHLEYHPYLSCEDYREFKQDP----DASLKEWCKGKEDVKRCPGCGFTIEKTEGCNHISCKCGKHICWVC
D5A9Q5_____________CFHKFCSHCMVRYVDSKLQTSQ-VPIRCPQIGCEHYMSVEECKAFLPDACFEALLKALAEANIPDSKRVY--CPFPNCSAMFDKGQDTSARASSSSYPEDTTIRCVECPECHRLFCADCCVPWHSSMSCEDYQSLPADERNSDDVTLHRLAQNRQ-WRRCQECRRMIELTQGCFHMTCWCGHEFCYAC

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
526	80	20			0.995493
530	80		20		0.995493
531	80			20	0.995493
533	20		80		0.995493
534		20	80		0.995493
546		20		80	0.995493
599	12	87			0.992554
601		87	12		0.992554
602	87		12		0.992554
603			12	87	0.992554
931	33			66	0.997452
937			33	66	0.997452
1131		85	14		0.993533
1182		14	85		0.993533
1185		85		14	0.993533
1230	66	33			0.997452
1231	33		66		0.997452
1683	50		50		1.0
1880		10		90	0.90298
1948	11	88			0.923564
1950	88			11	0.923564
1990		11	88		0.923564
1995		88	11		0.923564
1997	88	11			0.923564
2007		11	88		0.923564
2012	14			85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain