SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene533

Length: 1620 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene533

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Desiccation-related protein PCC13-62 precursor, putative [Medicago truncatula]	-	-	0.0	61%
FL-Next	sp=Desiccation-related protein PCC13-62; Craterostigma plantagineum (Blue gem) (Torenia plantagineum).	-	-	0.0	54%
Sma3	Desiccation-related protein PCC13-62, putative	-	-	3.178e-14	-

Source	Gene names
Sma3	At3g62730; F26K9_160; GSVIVT00027963001; GSVIVT00032375001; GSVIVT00033179001; H0502B11.4; LOC_Os03g22470; MtrDRAFT_AC173289g11v1; MtrDRAFT_AC173289g13v1; MtrDRAFT_AC173289g3v1; OJ000315_02.8; OSJNBb0118P14.11; Os03g0345300; Os04g0404400; OsI_11540; OsI_1

Source	GOs	Term	Type	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	response to stress	GO:0006950	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G47980.1	" unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expan	57%
RefSeq	Arabidopsis thaliana	NP_564518.1	uncharacterized protein [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002311374.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P22242

Fln msg:

Fln protein: MEMATLYLCLQAILLLSLNASPMAQALPVQGLHQSTINLSTEPDYTPVPVKGGDVDWLEFPINLEYLEAEFFLWSVFGYGLDKVAPELVSGGPPPIGGQKANLDPFLFEVIKEFADQEVGHLRALKKTVPGFPRPQLDLSASNFAKTVDVALNTTLSPPFNPYANSLNYLLASYLIPYVGLTGYVGANAQLQDPTAKRLVAGLLGVESGQDAVIRALLFKQKDDRVVPYPYKVSDFTSRLSNLRNTLGDTGIADQGLIPGYILAGDKNFVAYARTPAQILRIVYASGNESSPGGFYPRGGDGRFARQYLSRP*

Protein Length: 314

Fln nts: AGGGTTGTTCAAGGATAAAGGAATGGTCGGGGAGAAGGGGTTGGGTTAATAATGTACTACGACTGCGGGAGAAACTTTTGATATGCACGAAGAGCGTTGTAGGCACTGGTAATTTACTTAAACTTCACCAAAATTTGCATAGAATAAATCGTAATTTAGAATGTATACCAACAGACCATCTTGACACCAGAATTTACATAGATTAAATCCTAATTTAGGATCTATACCGACAAACCGTCTGGGAAAACGCTTGCAGAAGCTTCTTTTTGATCCATCTTTATGTTAACGCAATCTGTTCTCCGCATTATGTTAACGCAATCTGTTTTGCTTCTAAGTTTGGTTCTTTGAGAATTCGTATATTTATCTCCTCCCCATCTCAATCCCTCAGCACTAATTTCTATTCCAGTCTCGTAATCCCCAAGGCCAAA_-_ATGGAAATGGCTACACTCTATCTCTGTTTGCAGGCCATACTATTATTATCCCTTAATGCTTCACCAATGGCACAGGCTTTACCAGTACAAGGTCTGCATCAAAGTACAATTAATTTAAGTACTGAACCGGACTACACCCCTGTGCCAGTTAAAGGAGGGGATGTAGACTGGCTTGAATTTCCTATAAATTTAGAGTATTTGGAAGCCGAGTTTTTCCTGTGGTCAGTCTTCGGTTATGGACTGGATAAGGTTGCACCAGAGCTCGTAAGCGGTGGACCACCTCCCATAGGCGGACAGAAGGCTAACCTCGATCCATTCCTCTTTGAGGTCATCAAGGAATTTGCCGACCAGGAAGTTGGTCACCTCAGGGCTTTGAAGAAAACTGTGCCCGGCTTTCCTAGACCCCAACTGGATCTGAGCGCTTCAAATTTTGCCAAAACCGTCGACGTTGCATTGAATACCACTTTGTCGCCTCCTTTTAATCCGTACGCTAATAGTCTCAATTATCTACTTGCAAGTTATTTGATTCCCTATGTCGGACTTACTGGCTATGTGGGCGCCAATGCTCAGCTTCAAGACCCCACTGCCAAGCGGTTGGTAGCAGGGCTTCTTGGAGTGGAATCGGGACAGGACGCGGTTATCCGTGCTTTATTGTTTAAACAAAAGGATGACCGGGTGGTGCCCTATCCATACAAAGTCTCAGATTTCACATCACGGCTCTCCAATCTAAGGAATACTCTGGGAGACACAGGAATTGCTGACCAGGGATTGATTCCAGGATACATTCTTGCAGGCGATAAAAACTTTGTTGCATATGCACGCACCCCTGCCCAGATTTTGAGGATAGTCTACGCATCGGGTAACGAATCATCCCCGGGAGGATTCTACCCTCGTGGTGGTGATGGACGTTTTGCACGGCAATATCTCTCCAGACCATGA___TCCTAAAATGAGAGAGAGTAATTACTTGTTGCAGTCATTCTTCGCTTTTCTCCTTTGACACCACGCACCACCTTAATTCCTACCTTTTTCATGTTTGCTTTCATGTCATATGTCTTGTTCCCAATGTAAATACCTCATCTGCCCAGGGCCGTTTGCCTAATGTATTCCGTTCCATTGTCTCATTATCTGAAATTTCCGTGACGTGGAACTTCAAATAAATAAAGGCTTATAAGCTTCAATTTGTGTCTATGTT

Fln Alignment:

Contig533___DVDWLEFPINLEYLEAEFFLWSVFGYGLDKVAPELVSGGPPPIGGQKANLDPFLFEVIKEFADQEVGHLRALKKTVPGFPRPQLDLSASNFAKTVDVALNTTLSPPFNPYANSLNYLLASYLIPYVGLTGYVGANAQLQDPTAKRLVAGLLGVESGQDAVIRALLFKQKDDRVVPYPYKVSDFTSRLSNLRNTLGDTGIADQGL-----------IPGYILAGDKNFVAYARTPAQILRIVYASGNESSPGGFYPRGGDGR
P22242_____________DVSLLEFPLNLELLEAEFFAWAAFGKGIDELEPELAKGGPSPIGVQKANLSPFIRDIIAQFAYQEFGHVRAIQSSVEGFPRPLLDLSAKSFATVMDSAFGKTLKPPFDPYANDINYLLACYVVPYVGLTGYVGANPKLESPVSRKLVAGLLAVEAGQDAIIRALLYERATDKVEPYGITVAEFTNKISELRNKLGDKGVKDLGLIVEPELGAEGKISGNVLAGDKNSLAFPRTPERCLGSCTAAAMRPSPAAFIPKAPTGK

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
645		66	33		0.997452
651	33		66		0.997452
652		33		66	0.997452
655	66			33	0.997452
657			33	66	0.997452
664		25	50	25	0.995533
665			75	25	0.996473
666		25		75	0.996473
667	25			75	0.996473
754		25		75	0.996473
821	33	66			0.997452
832		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain