SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene525

Length: 3047 nt

UniGene Fasta

>sp_v3.0_unigene525
AAAGAAGGATATGGTCAATGAAGCCGCAGAGGAATTTTGAAGATCTGAACGTTAAATAGCTGTCGTTCGTGAGTTTTGCGGTTACTGTAAATAGCTGGCACTGGCTGGAGGCGTCTCTGCGAAGTCTGGCAAGTTCTCTTTAGGACAAAAAGTATTATGCTAATTTTGGCTAGAGTCAAAAGGACTTTGAGAGCGGATACTGAGACAGATTGAAGATTTTCAAGCAGAGGACGAGTAAGTTTTGGGGAAAAACTGTACGCTGAATCTCATTGGCAAGAAATAAGATTTTGAGGCTTTTGGGCAGAAGAAGGAAGTATTGATCCAAGAATGAAGTTAAAGCGGCGGTTTTTCATCATAAATGCAAGCATTTGGTTCTAAAATCCTAATATCTACGCGTTATATCACAAAGTTTAAGTACTTAGAACAATCTTCTCACTAAAAAATTAAAAGGATCTGTTGTCTGTTTGTATGAAGAACCACCGAGTTTGGGTCTGTTTGCGGCCGGAAAGGGGAAGATTAATCTCTGGATGTGATTTAATCCCTCGAGCATTTCTTCCTTGAAATCAAATCTTGATTCTTTAGCAGTAGCGTGAATCCCCTTGCTGTGGTAAATTTCACGATCTAAAGCGTGCTTGTAAAATATTCAGTATATAATTCTTTTAACAAGGCTAGATTGAATGAAGAGCTGTTGAAATTAGAGGTTATGAGCAATTAAAAAAAATATGAATAGAGAGGTATGAACTTCAAGAGGATAAACTGAAACATTTTCCGTGGCTCAATCTCTGCCCTTTCCGTGCCCATAGATCCAGAAACCTGGATAGTCTTTGGAATTCTGCCATAAGACATCCTCTTGTACTGCTGAAGAGATCATATTTGAGGTGATTCAAAGTTTCAATCATCAGATATAAATCTATTATTTGGTGATCCTTCGTAAGAAAGGTTGTTGAAGAAGAAATGAACTGTTTCATCTTGTCCGAGAAAACTGCGTCAGAGGCAGCATTTCATCCCATTTGTTCTGCATGGAAATTCTAGTTTTGTATTTATGCTCCAAATATATGCTATTAGAACTTTAAGCTGAGAGGGACTCTTTAGTAGTGTCCCAGGTGAACACTATTATTGGCAGGAAAACATACAGCAAATACGCCTGATAACAGTGGCTGAGTATTTGGTCTGGAAGGAAAGCTTTGAAGGCAAGAGATTACAGAGCTATCGAGATGTCTCTGAGAAGCATAATGCGTGAGATTAAGGAAGTGCGAAATGGAATTGGTAACATCTCTAGGAGACGAAGTTTTGACATGAGGGTTTCACACAACCACAGGGCAAGGTCTCAGGCAACCATAGATGATACTCTGAGTCGAGTTCTCTTTGTCCAACAGAGTCGATGGGCCAATCTTCCACCAGAATTACTTCATAATGTGATTCAGCGCTTGGAAACTAGTGAAGGTATCTGGCCGGCTCGAAAAAATGTAGTTGCCTGCGCTGGCGTCTGCAAGTCTTGGCGTGAGATAACTAAAGAAGTTGTCAAAACACCGGAGCAATGTGGAAAGCTTACATTTCCAATATCGTTGAAACAGCCTGGACCACGTGATCCACCCATGCAATGTTTTATCAAACGAGATCGGTCAGCTTCTACATACAAATTGTTCCTGGGCCTAACTCCTGCTTTGCTTGTTGAAAATGGGAAATTCCTCTTTGCTGCCAAAAAAGTTAGACATGCCACAAGCACAGATTATATAATTTCTTTGAGTTCCGAGGACTTCTCCCGAGCAAGTAACACATATGTGGGAAAATTGAGGTCAAACTTCCTGGGTACCAAGTTCACAATATATGATAGCCAACCTCCGCAGAGTGGTGCAGTAGTCTTAACTAGCCGGCCAAGTCGGAGATTTTATTCCAAGCAAGTATCTCCAAGAGTACCTGCTGGCAGCTATAACATAGCAAACATTGTTTATGAACTCAATGTCCTTGGTACTAGAGGGCCAAGGAGGATGCAGTGCACAATGCATTCTATTCCAGCTTCTTCTATTCAGGTTGGAGGAAATGCGCCAACACCGACAGAATTTCCTCGTTCATTGGATGAATCATTTTCCTTACCCTTTTCCAAAGAACCCCTTATAGATTTCAGCAGCTCTAGCTTATCAGAAATTCCAATCAATGTTGAGAGCAAAGATGTACCGCTTGTATTGAAAAATAAGGCACCGAGATGGCATGAACAGTTGCAGTGTTGGTGCCTGAATTTCAAGGGACGTGTGACAGTGGCATCTGTAAAAAACTTTCAGCTAGTTGCTTCCGTGGAACCTTCGCAGTTGGTGACACAAGCTGACCAGGACAAAGTTATCCTTCAGTTTGGGAAGATTGGAAAAGACATATTTACCATGGACTATCGCTACCCGTTGTCTGCTTTTCAGGCCTTTGCTATATGCTTAAGCAGTTTTGACACAAAACTGGCTTGCGAATGAGAGCAATGACCTTGGTCCATTGAAGTTGCTCATTCCGTACAAAATTAGGATATCCAGGTGCAGTATTATAAGACCAATTAATCCGCAGAATACACCACCAGATACTTATGTAACATGTTCACAAGGATGACAAGGATTTTAGGGGTGATAAAATCCTCAGTTTTTGCACATGGGTATGTGTAGCATTTTGGAATCAGTTTCATAGGGAAACAACATGTTAATGTAATATTGCAGATTATGGTCAGGGATCTTCCAAGTTCTGTAACACACTAGTTGGCCTGTTTGTGTTGCTCTCTTTTGAGAAATAGAGACACGAAACTAGTGGCTATCATGCCTATGTAACTTGAGAGTTCTATAACACACTAGTTGGCCTATTTGTGTTTCTCTCTTTTGAGAAATAGAGACACGCAACTAGTGGCTATCATGCCTATGTAACTTGAGAAATTTATATTCTCGTAAAGCAATTTGGAACCAGTTTCATGGGAAAACAATATGTTAATGTGGTATTGCATGTTATGGCCAGGCTTCTTCTAAGTTCTATAACACACTAGTTGACCTTCGTGTGTTTTTTCTATCTCCTGAGACAAT

Ace file of the UniGene sp_v3.0_unigene525

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Tubby-like F-box protein 5; Short=OsTLP5; AltName: Full=Tubby-like F-box protein 8; Short=OsTLP8 dbj\|BAD08037.1\| putative tubby-like protein [Oryza sativa Japonica Group] dbj\|BAG89242.1\| unnamed protein product [Oryza sativa Japonica Group]	-	-	0.0	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Sma3	Tubby protein	-	-	2.407e-15	-

Source	Gene names
Sma3	AT2G18280; AT2G47900; At1g25280; At1g43640; At1g47270; At1g53320; At1g61940; At1g76900; At2g18280; At2g47900; At3g06380; At5g18680; B1131G08.31; F12M16.22; F17A22.29; F22K20.1; F24P17.15; F4F7.13; F7O12.7; F8G22.1; F8K4.13; GSVIVT00011173001; GSVIVT000145

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tubby, C-terminal	IPR000007	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3		IPR013596	-	-
Sma3	Tubby, C-terminal, conserved site	IPR018066	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G25280.1	AtTLP10, TLP10 tubby like protein 10 chr1:8864961-8866608 FORWARD LENGTH=445	60%
RefSeq	Arabidopsis thaliana	NP_173899.1	tubby-like F-box protein 10 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002306697.1	f-box family protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUX5

Fln msg:

Fln protein: MSLRSIMREIKEVRNGIGNISRRRSFDMRVSHNHRARSQATIDDTLSRVLFVQQSRWANLPPELLHNVIQRLETSEGIWPARKNVVACAGVCKSWREITKEVVKTPEQCGKLTFPISLKQPGPRDPPMQCFIKRDRSASTYKLFLGLTPALLVENGKFLFAAKKVRHATSTDYIISLSSEDFSRASNTYVGKLRSNFLGTKFTIYDSQPPQSGAVVLTSRPSRRFYSKQVSPRVPAGSYNIANIVYELNVLGTRGPRRMQCTMHSIPASSIQVGGNAPTPTEFPRSLDESFSLPFSKEPLIDFSSSSLSEIPINVESKDVPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVASVEPSQLVTQADQDKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKLACE*

Protein Length: 416

Fln nts: AAAGAAGGATATGGTCAATGAAGCCGCAGAGGAATTTTGAAGATCTGAACGTTAAATAGCTGTCGTTCGTGAGTTTTGCGGTTACTGTAAATAGCTGGCACTGGCTGGAGGCGTCTCTGCGAAGTCTGGCAAGTTCTCTTTAGGACAAAAAGTATTATGCTAATTTTGGCTAGAGTCAAAAGGACTTTGAGAGCGGATACTGAGACAGATTGAAGATTTTCAAGCAGAGGACGAGTAAGTTTTGGGGAAAAACTGTACGCTGAATCTCATTGGCAAGAAATAAGATTTTGAGGCTTTTGGGCAGAAGAAGGAAGTATTGATCCAAGAATGAAGTTAAAGCGGCGGTTTTTCATCATAAATGCAAGCATTTGGTTCTAAAATCCTAATATCTACGCGTTATATCACAAAGTTTAAGTACTTAGAACAATCTTCTCACTAAAAAATTAAAAGGATCTGTTGTCTGTTTGTATGAAGAACCACCGAGTTTGGGTCTGTTTGCGGCCGGAAAGGGGAAGATTAATCTCTGGATGTGATTTAATCCCTCGAGCATTTCTTCCTTGAAATCAAATCTTGATTCTTTAGCAGTAGCGTGAATCCCCTTGCTGTGGTAAATTTCACGATCTAAAGCGTGCTTGTAAAATATTCAGTATATAATTCTTTTAACAAGGCTAGATTGAATGAAGAGCTGTTGAAATTAGAGGTTATGAGCAATTAAAAAAAATATGAATAGAGAGGTATGAACTTCAAGAGGATAAACTGAAACATTTTCCGTGGCTCAATCTCTGCCCTTTCCGTGCCCATAGATCCAGAAACCTGGATAGTCTTTGGAATTCTGCCATAAGACATCCTCTTGTACTGCTGAAGAGATCATATTTGAGGTGATTCAAAGTTTCAATCATCAGATATAAATCTATTATTTGGTGATCCTTCGTAAGAAAGGTTGTTGAAGAAGAAATGAACTGTTTCATCTTGTCCGAGAAAACTGCGTCAGAGGCAGCATTTCATCCCATTTGTTCTGCATGGAAATTCTAGTTTTGTATTTATGCTCCAAATATATGCTATTAGAACTTTAAGCTGAGAGGGACTCTTTAGTAGTGTCCCAGGTGAACACTATTATTGGCAGGAAAACATACAGCAAATACGCCTGATAACAGTGGCTGAGTATTTGGTCTGGAAGGAAAGCTTTGAAGGCAAGAGATTACAGAGCTATCGAG_-_ATGTCTCTGAGAAGCATAATGCGTGAGATTAAGGAAGTGCGAAATGGAATTGGTAACATCTCTAGGAGACGAAGTTTTGACATGAGGGTTTCACACAACCACAGGGCAAGGTCTCAGGCAACCATAGATGATACTCTGAGTCGAGTTCTCTTTGTCCAACAGAGTCGATGGGCCAATCTTCCACCAGAATTACTTCATAATGTGATTCAGCGCTTGGAAACTAGTGAAGGTATCTGGCCGGCTCGAAAAAATGTAGTTGCCTGCGCTGGCGTCTGCAAGTCTTGGCGTGAGATAACTAAAGAAGTTGTCAAAACACCGGAGCAATGTGGAAAGCTTACATTTCCAATATCGTTGAAACAGCCTGGACCACGTGATCCACCCATGCAATGTTTTATCAAACGAGATCGGTCAGCTTCTACATACAAATTGTTCCTGGGCCTAACTCCTGCTTTGCTTGTTGAAAATGGGAAATTCCTCTTTGCTGCCAAAAAAGTTAGACATGCCACAAGCACAGATTATATAATTTCTTTGAGTTCCGAGGACTTCTCCCGAGCAAGTAACACATATGTGGGAAAATTGAGGTCAAACTTCCTGGGTACCAAGTTCACAATATATGATAGCCAACCTCCGCAGAGTGGTGCAGTAGTCTTAACTAGCCGGCCAAGTCGGAGATTTTATTCCAAGCAAGTATCTCCAAGAGTACCTGCTGGCAGCTATAACATAGCAAACATTGTTTATGAACTCAATGTCCTTGGTACTAGAGGGCCAAGGAGGATGCAGTGCACAATGCATTCTATTCCAGCTTCTTCTATTCAGGTTGGAGGAAATGCGCCAACACCGACAGAATTTCCTCGTTCATTGGATGAATCATTTTCCTTACCCTTTTCCAAAGAACCCCTTATAGATTTCAGCAGCTCTAGCTTATCAGAAATTCCAATCAATGTTGAGAGCAAAGATGTACCGCTTGTATTGAAAAATAAGGCACCGAGATGGCATGAACAGTTGCAGTGTTGGTGCCTGAATTTCAAGGGACGTGTGACAGTGGCATCTGTAAAAAACTTTCAGCTAGTTGCTTCCGTGGAACCTTCGCAGTTGGTGACACAAGCTGACCAGGACAAAGTTATCCTTCAGTTTGGGAAGATTGGAAAAGACATATTTACCATGGACTATCGCTACCCGTTGTCTGCTTTTCAGGCCTTTGCTATATGCTTAAGCAGTTTTGACACAAAACTGGCTTGCGAATGA___GAGCAATGACCTTGGTCCATTGAAGTTGCTCATTCCGTACAAAATTAGGATATCCAGGTGCAGTATTATAAGACCAATTAATCCGCAGAATACACCACCAGATACTTATGTAACATGTTCACAAGGATGACAAGGATTTTAGGGGTGATAAAATCCTCAGTTTTTGCACATGGGTATGTGTAGCATTTTGGAATCAGTTTCATAGGGAAACAACATGTTAATGTAATATTGCAGATTATGGTCAGGGATCTTCCAAGTTCTGTAACACACTAGTTGGCCTGTTTGTGTTGCTCTCTTTTGAGAAATAGAGACACGAAACTAGTGGCTATCATGCCTATGTAACTTGAGAGTTCTATAACACACTAGTTGGCCTATTTGTGTTTCTCTCTTTTGAGAAATAGAGACACGCAACTAGTGGCTATCATGCCTATGTAACTTGAGAAATTTATATTCTCGTAAAGCAATTTGGAACCAGTTTCATGGGAAAACAATATGTTAATGTGGTATTGCATGTTATGGCCAGGCTTCTTCTAAGTTCTATAACACACTAGTTGACCTTCGTGTGTTTTTTCTATCTCCTGAGACAAT

Fln Alignment:

Contig525___MSLRSIMREIKEVRNGIGNISRRRSFDMRVSHNHRARSQATIDDTLSRVLF----------VQQSRWANLPPELLHNVIQRLETSEGIWPARKNVVACAGVCKSWREITKEVVKTPEQCGKLTFPISLKQPGPRDPPMQCFIKRDRSASTYKLFLGLTPALLVENGKFLFAAKKVRHATSTDYIISLSSEDFSRASNTYVGKLRSNFLGTKFTIYDSQPPQSGAVVLTSRPSRRFYSKQVSPRVPAGSYNIANIVYELNVLGTRGPRRMQCTMHSIPASSIQVGGNAPTPTE-FPRSLDESF-SLPFSKEPLIDFSSSSLSEIPINVESKDVPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVASVEPSQLVTQADQDKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKLACE
A9NUX5_____________MTVKNIFQDMK---GSIGSISRR-SFEVKFL---RSRSQSAVDDLHYRSNANNKNNSNNGGLQCSLWVNMPPELIRDVIQRIEESESSWPLRKSVVACAGVCRTWRQITKELVKIPEMSGKLTFPISLKQPGSRDPSVQCFIKRDRATSTYQLYLSLTPTLS-DNGKFLLAARKFRRATSTEYIISLDAEDMSRGSNTYVGKLRSNFLGTKFTIYDSQPPHSGAIASTSRAGRRVGAKQVSPRVPAGSYNIAHIGYELNVLGTRGPRRMQCIMHSIPASAVQPGGSAPTPVEPSITSLDHSLASCPTFGSKSCILESPSISEPLTNSNSKDEPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAPEPNPSVSQNDYDKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
429		25		75	0.996473
498		25		75	0.996473
644	75	25			0.996473
1354		12		87	0.992554
1437	87		12		0.992554
1447			90	10	0.90298
1458	10		90		0.90298
1652	11		88		0.923564
1653		11	88		0.923564
1654	11		88		0.923564
1655		88		11	0.923564
1656		88		11	0.923564
1741		14		85	0.993533
1807	10			90	0.90298
1809	10	90			0.90298
1811			90	10	0.90298
2019	10		90		0.90298
2048	42		57		1.0
2831		11		88	0.999937
2947		11	88		0.923564
2952	33	66			0.997452
2954	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain