SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene521

Length: 1782 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene521

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SEC12-like protein 1 [Arabidopsis thaliana] sp\|Q8GYE0.2\|PHF1_ARATH RecName: Full=SEC12-like protein 1; AltName: Full=Protein PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR 1; Short=PHF-1 emb\|CAB41339.1\| putative protein [Arabidopsis thaliana] gb\|ABI49462.1\| At	-	-	0.0	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%

Source	Gene names
Sma3	At3g52190; F4F15.300; GSVIVT00018072001; LOC_Os03g58570; OSJNBa0052F07.14; OSJNBb0084L07.11; Os03g0799900; Os07g0187700; OsI_13923; OsI_25181; OsJ_12976; OsJ_23379; PHF1; PHYPADRAFT_112962; PHYPADRAFT_154832; PHYPADRAFT_160718; PHYPADRAFT_218754; POPTRDRA

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	phosphate ion transport	GO:0006817	Biological Process	-
Sma3	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	cellular response to phosphate starvation	GO:0016036	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G52190.1	PHF1 phosphate transporter traffic facilitator1 chr3:19354117-19356910 REVERSE LENGTH=398	45%
RefSeq	Arabidopsis thaliana	NP_566961.1	SEC12-like protein 1 [Arabidopsis thaliana]	45%
RefSeq	Populus trichocarpa	XP_002316416.1	predicted protein [Populus trichocarpa]	48%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9U5

Fln msg:

Fln protein: MARRARYPNKNQNTSSTYHNEFSGTFASWIAGSKPTHGNDGDDVAHVLLGKASDEGEDGRRTAILQLLCYNFKPDSLSELNELPEEDVPVSMVVHPGGDGVILSFSKGCKFFELEGNSKLKVSDIVLSPMQDIGPQKCLAFSADGSKLATGGEDGHLRIFEWPSLQVLLDQPKAHSSFKDLDFSLDSAFLASTSNDGPARVWDIIKAAPLATLTRDQGESIDFCRFSRDGTKPFLFCTVTKGGKSRIAVWDITTWRKLGGKKFLDNPISAFGISRNGKFLSIGSTKGDISIIDVRQMQVQHSIKRAHPGAVITSIEFASNGRALLSVSPEWAARVNPIPCERDWKDWEIYLLLLTMVLISVILFYIFFEHSDSFWNFPLGREQPAKPPIEAILGDPVSSDDQNIW*

Protein Length: 407

Fln nts: TAAATACAGTCGCCATGTTATAAGGCAAAGAATATGCCACCCAGAATCGGCAGCATTATATGATACACGCGCCGGAATTGAGAAGGTCTTTATGCCCACGACAGTCCACGCTGCGGTTCAGACGTGTTAGCG_-_ATGGCACGCAGGGCAAGGTACCCGAACAAGAACCAGAATACGTCTTCCACATATCACAACGAATTTTCCGGGACATTTGCTTCCTGGATTGCAGGATCGAAGCCCACCCATGGTAACGATGGTGATGATGTTGCTCATGTTCTCTTGGGAAAGGCAAGTGACGAGGGGGAGGACGGCAGGAGAACGGCAATCCTCCAACTTCTTTGTTATAATTTCAAGCCAGATTCTCTCTCAGAGCTGAATGAGTTGCCGGAAGAAGATGTTCCTGTCAGTATGGTTGTGCATCCAGGGGGAGATGGGGTCATATTATCTTTCTCCAAGGGCTGCAAGTTTTTTGAATTGGAAGGAAATTCAAAACTGAAGGTATCGGATATAGTTTTGTCTCCTATGCAAGACATAGGACCTCAAAAGTGCCTTGCATTTAGTGCTGATGGATCTAAGCTTGCTACTGGAGGAGAGGATGGACACCTTCGCATCTTTGAATGGCCAAGCTTGCAAGTTTTACTGGATCAACCAAAAGCCCACAGTTCATTTAAAGACTTAGATTTCAGCCTGGATTCGGCCTTTCTTGCTTCAACATCAAATGATGGCCCTGCAAGAGTATGGGACATCATAAAGGCTGCACCATTAGCTACTTTAACACGTGATCAGGGTGAGAGCATTGACTTTTGTAGATTTTCTCGAGATGGAACCAAGCCATTCCTTTTCTGCACTGTAACAAAAGGTGGGAAATCAAGAATTGCAGTCTGGGACATTACTACATGGAGAAAGTTAGGAGGGAAGAAGTTTCTGGACAATCCGATCTCTGCATTTGGCATCAGTCGGAATGGAAAATTCCTTTCTATAGGAAGCACCAAGGGAGATATCTCTATAATTGATGTGCGACAAATGCAAGTGCAGCATTCTATTAAAAGAGCTCACCCTGGTGCGGTTATCACATCAATAGAATTTGCCTCCAATGGAAGAGCTTTACTGTCAGTATCACCTGAATGGGCTGCAAGAGTTAATCCAATTCCTTGCGAAAGAGATTGGAAAGATTGGGAGATATATCTGTTACTGCTCACAATGGTCTTAATTTCTGTCATTTTGTTCTACATATTTTTTGAGCATTCGGATTCATTTTGGAATTTTCCTCTGGGAAGGGAACAGCCTGCAAAGCCTCCAATTGAAGCAATTCTCGGTGATCCCGTTTCTTCTGATGATCAGAATATCTGGTGA___AAGAGGGTGGCACCCGAAACTCTCCCTGGATTCAGTCTGTGACCTCAAATTTATGTTGTGTACGTTTAAAGGGAGGAATTGTACATTTTGAATAGCTTGACGTGGTGTTCTGAAGTTTCAGTAGGAGTGTTGTCAATGTTGAAGAGCTTACAGATGATTTATTTAGTTGTGTTGGTTTTCGGCTTCATGCTTGGTCTTGTTTGTCAATAAAATTCTTCCTTTTAGTGCCTACACAAAGAAGAGGGTGGAAGTTATTCAATTGAAACCATAGAAGTCAAGCCCAATTGCCATCTGACTTTTTGTCAATAAATGCTAATTTTCTGAGGAGCACTCTTGTTGATCAATTCTGTTCCAAAATGGTGAGTAGATATCTGCTGCATAATTGATTCACAGATTTTATAATGTAACGTATCTTTTTCTTTATGTTCTGTA

Fln Alignment:

Contig521___MARRARYPNKNQNTS-STYHNEFSGTFASWIAGSKPTHGNDGDDVAHVLLGKASDEGEDGRRTAILQLLCYNFKPDSLSELNELPEEDVPVSMVVHPGGDGVILSFSKGCKFFELE-GNSKLKVSDIVLSPMQDIGPQKCLAFSADGSKLATGGEDGHLRIFEWPSLQVLLDQPKAHXXXXXXXXXXXXXXXXXTSNDGPARVWDIIKAAPLATLTRDQGESIDFCRFSRDGTKPFLFCTVTKGGKSRIAVWDITTWRKLGGKKFLDNPISAFGISRNGKFLSIGSTKGDISIIDVRQMQVQHSIKRAHPGAVITSIEFASNGRALLSVSPEWAARVNPIPCERDWKDWEIYLLLLTMVLISVILFYIFFEHSDSFWNFPLGREQPAKPPIEAILGDPVSSDDQNIW
D5A9U5_____________MARRSRYHNNNNQTMYSTDHNEFPGTLASWIAGSKPSHGNDGDDIAHILLGKAGEQREDGRRTAILQLLRYNFKPDSLTEVNVLPEKDVPVSMAVHPGGDGVILSFSQGCKFFELDSGKSKLKVSDIVLSSMQDIGPQKCLAFSADGSKFAAGGEDGHLRIFEWPSLQVLLDQPKAHSSFKDLDFSLDSAFLASTSNDGPARVWDIIKAAPLATLTRDQGESIDFCRFSRDGTKPFLFCTVTKGGKTRIAVWDITTWRKLGGKKFLDNPISAFGISRNGKFLAIGSTKGDISIIDVQKMQVQHSIKRAHFGAVITSIEFASNGRALLSVSPEWAARVNTIPYERDWKDWQIYLLLLAMVLLSVILFYIFFEHSDSFWNFPLGREQPARPPIEAILGDRVSSDDQNIW

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
84	50			50	1.0
88			50	50	1.0
473	25			75	0.996473
478	75		25		0.996473
647		85	14		0.993533
648		87	12		0.992554
649	87	12			0.992554
727		50		50	1.0
1385	97		2		0.967822
1640		84		15	1.0
1669		5		94	0.9982
1692	14			85	0.993533
1693		85		14	0.993533
1695	83	16			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain