SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene506

Length: 1469 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene506

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	electron transport SCO1/SenC-like protein [Arabidopsis thaliana] gb\|AAL49889.1\| putative SCO1 protein [Arabidopsis thaliana] gb\|AAM20370.1\| putative SCO1 protein [Arabidopsis thaliana] gb\|AAM62491.1\| putative SCO1 protein [Arabidopsis thaliana] gb\|AEE7470	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	cell redox homeostasis	GO:0045454	Biological Process	-
Sma3	cellular copper ion homeostasis	GO:0006878	Biological Process	-
Sma3	copper ion transport	GO:0006825	Biological Process	-
Sma3	respiratory chain complex IV assembly	GO:0008535	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Copper chaperone SCO1/SenC	IPR003782	-	-
Sma3	Synthesis of cytochrome c oxidase, Sco1/Sco2	IPR017276	-	-
Sma3		IPR017936	-	-
Sma3		IPR012335	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G08950.1	HCC1 electron transport SCO1/SenC family protein chr3:2727285-2729289 FORWARD LENGTH=334	60%
RefSeq	Arabidopsis thaliana	NP_566339.1	electron transport SCO1/SenC-like protein [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002323592.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU72

Fln msg:

Fln protein: MAMGSKILRRTSQLCSRFLHSYSRGYCAEPSHLLSAADSGGRSVFGSQRFLYSKSTIDMISSSLGYAKLSSSVSWRNMATDTAKVEEPPKEQPVQGSTKDGDKGDESHGTTSKGRPVREGPVTWMSLVLLIITGVGLIIYFDREKKRRIEEIKNVPAQVKEGPSVGKAAIGGPFNLVNHEGKPVTDRDFTGKWTLIYFGFTHCPDICPDELQKMVAAIDKIKEKAGIEVVPVFISVDPERDTVEQVREYVKEFHPNLVGLTGSQSDIRQVAREFRVYYMKTEEEEADYLVDHSIIMYLMDTDMEFVKFFGKNYDVDALTEGVINEVKSYKI*

Protein Length: 333

Fln nts: TAGTTCTGATTGCATCGCAGGAGAGCAAGAATCGATACGAGA_-_ATGGCAATGGGCTCCAAGATTTTGCGAAGGACTTCACAGCTATGTTCTCGGTTTCTTCATTCGTACTCTCGTGGATACTGCGCAGAACCTTCACATCTTCTTTCGGCTGCGGATAGCGGGGGACGGTCGGTTTTTGGGTCCCAGCGTTTTCTCTATTCGAAATCTACAATAGACATGATCAGCTCATCATTAGGATATGCAAAACTTTCTTCCTCAGTATCTTGGCGAAATATGGCCACAGATACTGCAAAAGTTGAAGAACCTCCAAAAGAACAACCAGTTCAAGGCTCCACAAAGGATGGAGATAAAGGAGATGAATCTCATGGGACCACTTCCAAAGGCAGGCCAGTACGAGAAGGACCTGTCACTTGGATGAGTTTGGTGCTCTTGATCATCACAGGGGTTGGATTGATTATCTACTTTGATCGCGAGAAGAAGCGTCGCATTGAAGAAATAAAGAATGTACCTGCACAGGTGAAAGAGGGGCCCTCGGTAGGCAAAGCTGCTATTGGTGGTCCGTTTAATCTTGTGAATCATGAAGGAAAACCTGTAACAGACCGTGATTTTACTGGAAAGTGGACATTGATTTATTTTGGCTTTACTCACTGCCCTGATATTTGCCCCGATGAACTTCAGAAAATGGTCGCTGCAATTGATAAAATAAAGGAAAAAGCGGGCATCGAGGTTGTACCTGTCTTTATATCAGTGGATCCAGAGAGGGATACTGTTGAGCAAGTCCGTGAATATGTCAAAGAATTCCATCCAAATCTGGTGGGTTTAACAGGAAGTCAGAGTGATATCAGACAGGTTGCCCGAGAATTCCGAGTTTATTACATGAAGACAGAAGAGGAAGAAGCTGATTACCTTGTAGACCATTCTATTATCATGTATTTAATGGACACAGACATGGAATTTGTGAAATTCTTTGGGAAAAATTATGATGTCGATGCTTTGACGGAGGGAGTAATTAATGAAGTCAAATCCTATAAAATATAA___TTGTTTTACCGGATTTACTCAGACTTTGTGGTATGCTGTCCTTCCACGTAAGGATGGATGTCCATTAATAATAGTTCCATTGGAGCTAATTTATTCTCTCAATTTTAAGGGCCTGGTGCAAATTGAAAAGCTTTAGTGTTAAATTAGTTGCGATTCATATTTTCTGGTTACAGAAAATAAAACCAGAAAATATTTGATTGGTACGAGTGGCCAGTCCAGGACAGGATTCTTTTGGAATTTTTTTAAGCATTGAGGATGTATTATGAGGGGAATGACCTTTAGAAATCGAGCAGTTCCATTTCGCATTATATGTTCATGGGCGGTATATAAGTGTGGCTTTTGAAATGAGGGTTGATTAAATAATTGGGGATACGTTATATTTTCGTTTCGTGCATTCTATTCTAATTTCATTAAAACTTTTATGCCTGGGC

Fln Alignment:

Contig506___MAMGSKILRRTSQLCSRFLHSYSRGYCAEPSHLLSAADSGGRSVFGSQRFLYSKSTIDMIXXXXXXXXXXXXXXWRNMATDTAKVEEPPKEQPVQGSTKDGDKGDESHGTTSKGRPVREGPVTWMSXXXXXXXXXXXXXYFDREKKRRIEEIKNVPAQVKEGPSVGKAAIGGPFNLVNHEGKPVTDRDFTGKWTLIYFGFTHCPDICPDELQKMVAAIDKIKEKAGIEVVPVFISVDPERDTVEQVREYVKEFHPNLVGLTGSQSDIRQVAREFRVYYMKTEEEEADYLVDHSIIMYLMDTDMEFVKFFGKNYDVDALTEGVINEVKSYK
A9NU72_____________MAMGSRILRRTSQFCSRFLHSYSRAYCAEPSRLLSAAEIGGSSVSGSQGFLYSKSTVHRIASSFGYAKLSSSVFWRNMATDTAKVEEPPKEQPVQASTKDGDKGNESGGTTSKGRPVREGPVTWMSLVLLIITGVGLIIYFDREKKRRIEEIKNLPAQVKEGPSVGKAAIGGPFNLVNHEGKPVTDRDFTGKWSLIYFGFTHCPDICPDELQKMVAAIDKIKEKAGFEVVPVFISVDPERDTVEQVHEYVKEFHPNLVGLTGSQSDIRQVAREFRVYYMKTEEEEADYLVDHSIIMYLMDPDMEFVKFFGKNYDVDALTEGVINEVKSYK

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
488	16			83	0.994512
491	83			16	0.994512
492	83			16	0.994512
663			14	14	0.984337
664		14	85		0.993533
701		42		57	1.0
709	50	50			1.0
725		57		42	1.0
738	42		57		1.0
855	20		80		0.995493
875		25		75	0.996473
964	75	25			0.996473
1079			20	80	0.995493
1149			80	20	0.995493
1151			80	20	0.995493
1155			60	40	1.0
1177	40			60	1.0
1290	33			66	0.997452
1327			40	60	1.0
1328		60		40	1.0
1363			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain