SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene502

Length: 3224 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene502
TGCCTTTTCATTCAAACTATATATACGCACATTGAAACATTCGTCTATGGGACTAAGCAAATAGCTTGGAGGCAGAGAGAGCTTCTTCTCAACTCCTGATTGTACTAAGCAAAGCTTGGTCGATAGAAAATGAGAGGAGGGAAGGCAGTCGAAGGAGAGGAGTCCAACGATGGCTCTGGTGGGCATCCAGGCAAGTCGAAATCGAGAGGCAGCCGGTGGGACAAACAAAAGTCGGCATCGAAGCAGGAAGCCCAAGCAGGGCCTGTTGCGTCAGCTCCTGATACGGACCCTGCGACAGCCGGTGCTGAGAATGCTGCGGCCGGGGAGCCCGTGGAACCCAAAACAGCACCGGACGTTGATTCACAGAAATTGAATCCGAGGCCGCTCAACCCAACTGAAGCAGGACCTTCACAGAAATTGAACCCGAGGCCGCTCAACCCAATGGAAACAGGACCTTCGCAGAAATTGAACCCGAGGCCACTCAACCCAATGGAAGTTGGACCTTCACGGGACCAAGTTGACGCAGGGTTTCAAAAGAACCCCAGATTTGAAAACATAGCACCCAGGCCAGTTCAGTTAGGGTTTGAAATACTTGAGAAGCGACCGATCACTATGACAGACGGGACCGTCCGCACGTACTACGCGTTGCCCCCGTCCGAGCAACAACATCCATTCCCCTCAGGTAACGCTGCTGCCTCTTCATTCGAGAATGTAAAGATTGGAAACCGTGAACTGAATTCTGGACATCATGGTTATGAAAATCAATATGCTGTGCCTGAAAACCCTCATCAGCATGTAGGCCCTTTTGATGCAAGAAACGCTGAGTTTGAGAGGTTTTATGCTGCAAGCCCAGCGGCGCCGCCGCTTCAGTCCGGCGGCTTAGGGCATGATAATTCCAGAGAACGTCCAGGTGATGAAGGTTCGATACCTAGGGTTCCCCGTGATTATCAGTATGGGAAGGTAGCGGGGATGGGTCCTTCAATGGAAATTCCTTCAGAAAGGGATTATGTTCCGGCGGGTGGCCCGGGGCTTGATGGATCTGCTAGGGAAGGGTATCCTTACAGGAATTTGGGTCCTGAAGGCGGCGGTCCAATGGAGGGTTCGAGGGGTCCCATGGAGGGTTCGAGGAATCCGATGAGTCCCAGAGGATACCAAGTCAGCCCGCACTCAGCTCCAATGCGCATGGCTCCTCGTGAGCCCTTTTACGGATCTGGTGATAATTTGTTGAAGCGTAAGTATGCAGAGGAAGAGGCTGCTAGTGACAGTATGCAGAGAGGTGTAATGGATGACAGGGATTATATGAGGCGTGCACGGGAAATGGAGATTGAAGAGTATCGCCGCAGAGAACAAGGGACATCCGATTTTTCACGTGACAAATACCTAGAAGAAGATATTATGAGGTCCCGGGGGTATTTAATGTCAAGACAGCCATCGCACTATGATAGCCCGCATGGGGTTCCTGCATCGAGATTCACTTCCAATAACAAGGATCCTATGCGTGGCCCCTCTGCTGAATCATGGGTGTCACCATCCCATCAAGGCCCAGGTGGATCACTGAACCGAGGGAGGCAGGAGTTACAGTATAATAATGCTTTAGGTAGGGATCGGGAGGAAGGACATGATTATCAGCGTCCTTTTAAGCACCAAAGACTGAATGATGCTCATGATAGTCAAAATAGAGTTGGAAGTGAGCGTCATGCAATTGACGATGCTTTCAAATCGGATCGGGAGCCTATGCAGCAGCCTGGTTTAGTGGAGAATAATCAGGAGCTCAAGCAACAAGTACAGAGAGCTTATCTCCGATTTGTAAAATTACTTAATGAAAATGCAGGGCAACGTAGAAGATACGAAGAGGATGGGAAAGGTGGCCCTGTGCAATGTGCTGTCTGTAGTAGTCAATCTATGGATTTTGTGGATACTCACAGCCTTATTATGCATGCATACAACGCTCCAAATCCTATGCTGCGATCAGAACACTTGGGACTTTATAAAGCATTATGTGTTTTGATGGGATGGAGCTATGCCTCTCCACCAGATAATGAAAAATCATATCAGTCATTCTCAGCACCTGAAGCAATGGAAAACACTCAAGATCTTATTTTATGGCCACCACTTGTTATTATTCAAAATGCAAGTACTGGAAAAAGAAAGGATGGCCTTCTGGAGGGTATTGGAAATCGAGAGATGGATGCACAACTTGAAGAACTTGGGTTTACTGGTGGAAAGTCAAAGGCAGTATATGGAAGAGGTGGCCATCAAGGCACAATAATTGTAAAATTCTCTCCCTCTTCTGCTGGTTTACAAGAGGCAGAGCAGCTAATCAAATATTTTGAAAGTAAAAATCATGGGCGGAAAGATTGGCTACGAGTTCAATCTTCAACTGTGAATCAAGAAAATGGTGAAGAGAATCCAGAGTTAGTAGAGACTGATGAAAAAACTAAGCAGAAAAAGAGGGTACTGTATGGCTATCTTGCAATAGCTGGGGACTTGGAGAAACTTGACGTTGATACTAGAAAAAGGGCTTTAGTAAAAAGCAAGAAAGATATAGATGCTACAGCAGATGGGCAGGTCTAAGATGGCATTTCTTTGATTTTAACATGAATAATATAATTGCCTTCACAGTGGTTTACTTAGATGTCAAGATTAGGTAGAATTTGTGGTCATGTATGGCATCTTTTTCGGTTATGGTTTATAAGGTTTAGTGATTCAAAGTGACAGACTTATTCGGTCTTGTAGCACAGTGGTGTTTATCTATTTCAAGCTATGGATGTCGCTGAGAACTTATGAATGCTGATTATACAGTTTAGAGCATGCATGCTCTTGATTAGATTGGTAGATTTGCAAAATGAGGTTCATCAGTTTATGTACTATGAGATGTAGTTTTCTTTCTAATGGTCAACGACAGCGGCAGTATAATGAGGAGAGAAAAAACATTTATATTCTTAATATGCCTGAAACTAGTGTTCTGATTATTACCATACTAGATTATGACACCATATTTAACAGGCAATGATTACAATTAGTTTGTCCTTAGTAGGTTAAAGGAAGCCTTGATTCAAATTGAAAACTTTAGTGAGTGAAGGTCCTTAGGAGGAGTTAGTTCCCAAGCAAGAATGACACCCCATCTGTTTGTCCAGTTTGTACAGCTGATATGTGCACTAAGCACATATTACATCGCATCCCTTGGATTTTGTAATTATTCATTTAATACTACTAAATGTCAT

Ace file of the UniGene sp_v3.0_unigene502 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	XS domain containing protein	-	-	2.0e-23	34%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	36%

Source	Gene names
Sma3	LOC_Os03g06340; LOC_Os11g37070; OJ1134F05.17; Os03g0159200; OsI_10101; OsI_36048; OsJ_09484; OsJ_34371; POPTRDRAFT_419235; POPTRDRAFT_566242; RCOM_0912140; VITISV_022062;

Source	InterPros	Term	Type	e value	Identity
Sma3	XS domain	IPR005380	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002311626.1	predicted protein, partial [Populus trichocarpa]	0.0	50%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6HDQ3

Fln msg: your sequence is longer than subject: 815 - 582

Fln protein: MRGGKAVEGEESNDGSGGHPGKSKSRGSRWDKQKSASKQEAQAGPVASAPDTDPATAGAENAAAGEPVEPKTAPDVDSQKLNPRPLNPTEAGPSQKLNPRPLNPMETGPSQKLNPRPLNPMEVGPSRDQVDAGFQKNPRFENIAPRPVQLGFEILEKRPITMTDGTVRTYYALPPSEQQHPFPSGNAAASSFENVKIGNRELNSGHHGYENQYAVPENPHQHVGPFDARNAEFERFYAASPAAPPLQSGGLGHDNSRERPGDEGSIPRVPRDYQYGKVAGMGPSMEIPSERDYVPAGGPGLDGSAREGYPYRNLGPEGGGPMEGSRGPMEGSRNPMSPRGYQVSPHSAPMRMAPREPFYGSGDNLLKRKYAEEEAASDSMQRGVMDDRDYMRRAREMEIEEYRRREQGTSDFSRDKYLEEDIMRSRGYLMSRQPSHYDSPHGVPASRFTSNNKDPMRGPSAESWVSPSHQGPGGSLNRGRQELQYNNALGRDREEGHDYQRPFKHQRLNDAHDSQNRVGSERHAIDDAFKSDREPMQQPGLVENNQELKQQVQRAYLRFVKLLNENAGQRRRYEEDGKGGPVQCAVCSSQSMDFVDTHSLIMHAYNAPNPMLRSEHLGLYKALCVLMGWSYASPPDNEKSYQSFSAPEAMENTQDLILWPPLVIIQNASTGKRKDGLLEGIGNREMDAQLEELGFTGGKSKAVYGRGGHQGTIIVKFSPSSAGLQEAEQLIKYFESKNHGRKDWLRVQSSTVNQENGEENPELVETDEKTKQKKRVLYGYLAIAGDLEKLDVDTRKRALVKSKKDIDATADGQV*

Protein Length: 816

Fln nts: TGCCTTTTCATTCAAACTATATATACGCACATTGAAACATTCGTCTATGGGACTAAGCAAATAGCTTGGAGGCAGAGAGAGCTTCTTCTCAACTCCTGATTGTACTAAGCAAAGCTTGGTCGATAGAAA_-_ATGAGAGGAGGGAAGGCAGTCGAAGGAGAGGAGTCCAACGATGGCTCTGGTGGGCATCCAGGCAAGTCGAAATCGAGAGGCAGCCGGTGGGACAAACAAAAGTCGGCATCGAAGCAGGAAGCCCAAGCAGGGCCTGTTGCGTCAGCTCCTGATACGGACCCTGCGACAGCCGGTGCTGAGAATGCTGCGGCCGGGGAGCCCGTGGAACCCAAAACAGCACCGGACGTTGATTCACAGAAATTGAATCCGAGGCCGCTCAACCCAACTGAAGCAGGACCTTCACAGAAATTGAACCCGAGGCCGCTCAACCCAATGGAAACAGGACCTTCGCAGAAATTGAACCCGAGGCCACTCAACCCAATGGAAGTTGGACCTTCACGGGACCAAGTTGACGCAGGGTTTCAAAAGAACCCCAGATTTGAAAACATAGCACCCAGGCCAGTTCAGTTAGGGTTTGAAATACTTGAGAAGCGACCGATCACTATGACAGACGGGACCGTCCGCACGTACTACGCGTTGCCCCCGTCCGAGCAACAACATCCATTCCCCTCAGGTAACGCTGCTGCCTCTTCATTCGAGAATGTAAAGATTGGAAACCGTGAACTGAATTCTGGACATCATGGTTATGAAAATCAATATGCTGTGCCTGAAAACCCTCATCAGCATGTAGGCCCTTTTGATGCAAGAAACGCTGAGTTTGAGAGGTTTTATGCTGCAAGCCCAGCGGCGCCGCCGCTTCAGTCCGGCGGCTTAGGGCATGATAATTCCAGAGAACGTCCAGGTGATGAAGGTTCGATACCTAGGGTTCCCCGTGATTATCAGTATGGGAAGGTAGCGGGGATGGGTCCTTCAATGGAAATTCCTTCAGAAAGGGATTATGTTCCGGCGGGTGGCCCGGGGCTTGATGGATCTGCTAGGGAAGGGTATCCTTACAGGAATTTGGGTCCTGAAGGCGGCGGTCCAATGGAGGGTTCGAGGGGTCCCATGGAGGGTTCGAGGAATCCGATGAGTCCCAGAGGATACCAAGTCAGCCCGCACTCAGCTCCAATGCGCATGGCTCCTCGTGAGCCCTTTTACGGATCTGGTGATAATTTGTTGAAGCGTAAGTATGCAGAGGAAGAGGCTGCTAGTGACAGTATGCAGAGAGGTGTAATGGATGACAGGGATTATATGAGGCGTGCACGGGAAATGGAGATTGAAGAGTATCGCCGCAGAGAACAAGGGACATCCGATTTTTCACGTGACAAATACCTAGAAGAAGATATTATGAGGTCCCGGGGGTATTTAATGTCAAGACAGCCATCGCACTATGATAGCCCGCATGGGGTTCCTGCATCGAGATTCACTTCCAATAACAAGGATCCTATGCGTGGCCCCTCTGCTGAATCATGGGTGTCACCATCCCATCAAGGCCCAGGTGGATCACTGAACCGAGGGAGGCAGGAGTTACAGTATAATAATGCTTTAGGTAGGGATCGGGAGGAAGGACATGATTATCAGCGTCCTTTTAAGCACCAAAGACTGAATGATGCTCATGATAGTCAAAATAGAGTTGGAAGTGAGCGTCATGCAATTGACGATGCTTTCAAATCGGATCGGGAGCCTATGCAGCAGCCTGGTTTAGTGGAGAATAATCAGGAGCTCAAGCAACAAGTACAGAGAGCTTATCTCCGATTTGTAAAATTACTTAATGAAAATGCAGGGCAACGTAGAAGATACGAAGAGGATGGGAAAGGTGGCCCTGTGCAATGTGCTGTCTGTAGTAGTCAATCTATGGATTTTGTGGATACTCACAGCCTTATTATGCATGCATACAACGCTCCAAATCCTATGCTGCGATCAGAACACTTGGGACTTTATAAAGCATTATGTGTTTTGATGGGATGGAGCTATGCCTCTCCACCAGATAATGAAAAATCATATCAGTCATTCTCAGCACCTGAAGCAATGGAAAACACTCAAGATCTTATTTTATGGCCACCACTTGTTATTATTCAAAATGCAAGTACTGGAAAAAGAAAGGATGGCCTTCTGGAGGGTATTGGAAATCGAGAGATGGATGCACAACTTGAAGAACTTGGGTTTACTGGTGGAAAGTCAAAGGCAGTATATGGAAGAGGTGGCCATCAAGGCACAATAATTGTAAAATTCTCTCCCTCTTCTGCTGGTTTACAAGAGGCAGAGCAGCTAATCAAATATTTTGAAAGTAAAAATCATGGGCGGAAAGATTGGCTACGAGTTCAATCTTCAACTGTGAATCAAGAAAATGGTGAAGAGAATCCAGAGTTAGTAGAGACTGATGAAAAAACTAAGCAGAAAAAGAGGGTACTGTATGGCTATCTTGCAATAGCTGGGGACTTGGAGAAACTTGACGTTGATACTAGAAAAAGGGCTTTAGTAAAAAGCAAGAAAGATATAGATGCTACAGCAGATGGGCAGGTCTAA___GATGGCATTTCTTTGATTTTAACATGAATAATATAATTGCCTTCACAGTGGTTTACTTAGATGTCAAGATTAGGTAGAATTTGTGGTCATGTATGGCATCTTTTTCGGTTATGGTTTATAAGGTTTAGTGATTCAAAGTGACAGACTTATTCGGTCTTGTAGCACAGTGGTGTTTATCTATTTCAAGCTATGGATGTCGCTGAGAACTTATGAATGCTGATTATACAGTTTAGAGCATGCATGCTCTTGATTAGATTGGTAGATTTGCAAAATGAGGTTCATCAGTTTATGTACTATGAGATGTAGTTTTCTTTCTAATGGTCAACGACAGCGGCAGTATAATGAGGAGAGAAAAAACATTTATATTCTTAATATGCCTGAAACTAGTGTTCTGATTATTACCATACTAGATTATGACACCATATTTAACAGGCAATGATTACAATTAGTTTGTCCTTAGTAGGTTAAAGGAAGCCTTGATTCAAATTGAAAACTTTAGTGAGTGAAGGTCCTTAGGAGGAGTTAGTTCCCAAGCAAGAATGACACCCCATCTGTTTGTCCAGTTTGTACAGCTGATATGTGCACTAAGCACATATTACATCGCATCCCTTGGATTTTGTAATTATTCATTTAATACTACTAAATGTCAT

Fln Alignment:

Contig502___PSERDYVPAGGPGLDGSAREGYPYRNLGPEGGGPMEGSRGPMEGSRNPMSPRGYQVSPHSAPMRMAPREPFY--------GSGDNLLKRKYAEEEAASDSMQRGVMDDRDYMXXXXXXXXXXXXXXEQGTSDFSRDKY----LEEDIMRSRGYLMSRQPSHYDSPHGVPASRFTSNNKDPMRGPSAESWVSPSHQGPGGSLNRGRQELQYNNALGRDREEGHDYQRPFKHQRLNDAHDSQNRVGSERHAIDDAFKSDREPMQQPGLVENNQELKQQVQRAYLRFVKLLNENAGQRRRYEEDGKGGPVQCAVCSSQSMDFVDTHSLIMHAYNA--PNPMLRSEHLGLYKALCVLMGWSYASPPDNEKSYQSFSAPEAMENTQDLILWPPLVIIQNASTGKRKDGLLEGIGNREMDAQLEELGFTGGKSKAVYGRGGHQGTIIVKFSPSSAGLQEAEQLIKYFESKNHGRKDWLRVQSSTVNQENGEENPELVETDEKTKQKKRVLYGYLAIAGDLEKLDVDTRKRALVKSKKD
F6HDQ3_____________PDYQDFPPPPPRAMDPAGRFLPMGPGHGPEPVGPGLG-RFPLTG---PMSPEGFR-GERDDPYSRGRHQDYWNSLGLDGRGHPEGSMKRKYSEED------ERDRREDRD---------------RRDGNDEFARQRQQLLQYGNPSLNPNGYPLGGDRSEYLAG---PSSPFRRGVMDPIRG---------------------------------------DELRSSKYMRIGGGYEGFSRQGGVGDNV--------------GLKHHNVD-QNALKKAFIQFVKLINESASQRRLYLEDGKQGPLRCLACGRSSKDFPDMHALVMHTYNSNSDNANLLVDHLGLHKALCVLLGWNYSMPPDNSKTYQFLSADEAAANQDDLIMWPPTVIIHNTVSGKGKDGRMEGLGNKAMDNKLRDLGFGGGKSKSLYGRDGHQGITLVKFSGDQSGLKEAVRLSEFFEKDNHGRKGWARVQPLLPGRDS-ENNPNLVKVDERTGEKKRIFYGYLATASDLDKVDFETRKKVLIESKRE

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
222		33	66		0.997452
318		40		60	1.0
360	33		66		1.0
533	83		16		0.999991
796	87	12			0.992554
1798		50		50	1.0
1917	16	83			0.994512
2020	71		28		1.0
2054	14		85		0.993533
2057			85	14	0.993533
2067		16		66	0.988813
2068		16	83		0.994512
2069	83	16			0.994512
2071	16			83	0.994512
2080	20			80	0.995493
2081		80		20	0.995493
2250	25		75		1.0
2276		16		83	0.994512
2277		16	83		0.994512
2392		80		20	0.995493
2393		80	20		0.995493
2394	20			80	0.995493
2395		80	20		0.995493
2397		80	20		0.995493
2399	80	20			0.995493
2401		83	16		0.994512
2402		16		83	0.994512
2405	16		83		0.994512
2406		83	16		0.994512
2409		16		83	0.994512
2410	16			83	0.994512
2412	16			83	0.994512
2413		16		83	0.994512
2482		33		66	0.997452
2486			66	33	0.997452
2977		40		60	1.0
3133	50		50		1.0
3144	50		50		1.0
3173		20	80		0.995493
3176	33	66			0.997452
3177		66	33		0.997452
3179			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain