SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene482

Length: 2370 nt

UniGene Fasta

>sp_v3.0_unigene482
AGGAAGGATGGGTAAATGGGAATAGAAGACGGTCGAATGGGAGAGACGGAGACGTCAATGGAAGCGTTATGAGGAACCGATGAGAGGCTTGTTGGAAAAATCCGACAGAGAGCTTTTATCTTGATGACAACCTGGTTTCAGTAAGACCGGGGAAGCGGTGAAATTATTCCTCGGTGACTTTATCTGTGATGGTAAGAGGCACAAGTTGTGGATAGCCAAGTATTTAAAGAGCAGATATTACCATCGCATGAAATGGCACATGTATCTGGCGCGGCGAGAGCAGGCGCCATGATGTTTGGAAGCAATGCTCTTGTGTGTGCCAATAGATGGCTGCTGCTAAACCCTTCTCTAACTTTCAGACCGCCTCAAACGTGGTACCAATATTCCCCCAACACCAGTTTAATCATCATAAGTCAGCGTCCTCCTGTACGTTGGGGTCGTCGTTGTCTCTGCATATCTCAGGCGAATGAAGCTTCTTCTACTGGTGCTACAGTCACAACAAATACTTATATGGAGGAAGGAGAGGTCTCCATTATGGACAAGAAGTGTGGACGATCAACTGTTTCTGCTTCTCCTCTGAATCATGGGGAAGTTATCGATGTTAATCCTCCACGTGGAACCAGAGATTTTCTGCCAGAGGACATGCGGCTTCGCAAATGGCTTTTTCAAAAGTTTCGAGAAGTTTCCAGATTATTTGCATTTGAAGAAGTTGATTTCCCAGTTCTCGAATCTGAAGCACTTTTTGTGAGAAAATCAGGGGAAGAGATAACAGAACAGCTCTACAGTTTTGTAGACAAGGGTGGTCGGCGGGTTGCACTTCGGCCAGAGCTGACACCGTCTTTAGCTCGGGTGGTTATGCAAAAGGGGAAAGCGTTGTCACTTCCTCTCAAATGGTTTGCGATAGGACAATGTTGGCGTTATGAAAGGATGACCAGAGGAAGACGCCGAGAACATTACCAATGGAATATGGATATATTTGGAGTTTCAGGCATAGAGGCTGAAGCAGAACTCCTTTCTGCTATTGTTACATTCTTCAAGCAACTTGGAATTACATCATCTGATGTGGGGATCAAAGTTTCCAGTCGAAAGGTTCTTGAAGCTGTGATGGAGCATCATTCCATACCCAAAGATTCATTTTCAGCAGTTTGTGTCATGGTTGACAAGATTGAGAAAATGCCTATAGAAGACATAAAAAAGGAATTGAGAGTTGCTGGAATTCCATCAGATGCAGTTGAAGGAATTCTGCATGCTTTGTCATTAAGATCACTAGCTGAATTAGAAGAGTTCCTTGGTTCGGACAGTGGGGCAGTTGCTGAACTGAAACTACTATTTTCTTTTGCAAATGAATATGGTTATGCTGATTGGCTTCAGTTTGATGCGTCAGTTGTTCGTGGCCTTGCTTATTACACAGGGACTGTTTTTGAGGGTTTTGACAAAGATCGGAAACTTCGAGCAATATGTGGAGGTGGACGGTATGACTGCCTTCTTTCTACTTTTGGTGGCTCTGACATCCCGGCATGTGGTTTTGGTTTTGGAGATGCTGTCATTATGGAATTGCTTAGGGAGAAAAATTTGATCCCAATTCTAACTCAGGAAATAGATGACATAGTTTTCCCTTTGAATGGAGAGCTTAAGCAAGCAGCTGCCATGGTGGCATCCAATTTACGAAAGAAAGGGCGCATTGTGGATCTCATTCTCGAGGACAAACGCCTGAAATGGGCATTTAAGCATGCAGAAAGAGTAAATGCAAAGAGGTTGTTTCTTGTCGGGCAAGCTGAGTGGGAATGTGGTGCTGTGCGTGTAAAAGATCTTGCAACTAGAGAAGAATCTGATATATTGATTAGTGATTTATTATAAAACTCTACCTTTCATATCTATTTCTTCAACAATAGATCTCAACATATTTATGATCTTGCAAAGTTTCGAAGGGGGGAAGCAATCTTGTCCAATTTTTCGATCCTTGGATTTTTCTTACATGCATATGTACCTAGAGTTGATGCACATTCAGATTGGAGAAATAGCATGTTATGGAGGTTGGAGATAGAAAAGAGAGATTTATTGGTTGGTCGTAGGCACATGTTTGGAAGGAGACACAAAAACATTTGTCCATTGTAAGAAAGTATTATTCTTTATTTTTTATCTGTAGAGAAATGTTATTTCATATGCTTCTCAAGTATTCAAATTGAGAGATATCCACATTATTAAAATGGAGCTAATGAGTAAGAAATATTGCTTACAAGTTCTGCAGTGCAGAGGAAAACATTTTTCTTTAATTATTAGCTGCAAAGCATTGTCATTTCATATGTTTTTCAAGTCTCAAAATTGAGAAACCTACAACATATGCACTCTTAATTATTGATTTTTGGATAC

Ace file of the UniGene sp_v3.0_unigene482

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histidyl-tRNA synthetase n=3 Tax=Andropogoneae RepID=B6TS97_MAIZE	-	-	0.0	65%
FL-Next	tr=Putative uncharacterized protein Sb03g003570; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	69%
Sma3	Histidyl-tRNA synthetase	-	-	2.024e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3	Histidine--tRNA ligase.	EC:6.1.1.21	-	2.066e-10	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Aminoacyl-tRNA biosynthesis	00970		2.066e-10	%

Source	Gene names
Sma3	At3g46100; CHLREDRAFT_112211; F12E4_150; F12M12_70; GSVIVT00023243001; MICPUCDRAFT_36675; MICPUCDRAFT_48335; MICPUN_68035; MICPUN_92337; OSTLU_29417; OSTLU_88696; Os02g0754700; OsI_08984; OsJ_08428; Ot11g03490; Ot14g01250; P0627E03.18; PHATRDRAFT_23920; P

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	histidine-tRNA ligase activity	GO:0004821	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	cob(I)yrinic acid a,c-diamide adenosyltransferase activity	GO:0008817	Molecular Function	-
Sma3	histidyl-tRNA aminoacylation	GO:0006427	Biological Process	-
Sma3	cobalamin biosynthetic process	GO:0009236	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain	IPR002314	-	-
Sma3	Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, EutT/PduO type	IPR002779	-	-
Sma3	Anticodon-binding	IPR004154	-	-
Sma3	Histidyl-tRNA synthetase, class IIa	IPR004516	-	-
Sma3	Aminoacyl-tRNA synthetase, class II	IPR006195	-	-
Sma3	Histidyl-tRNA synthetase, class IIa, subgroup	IPR015807	-	-
Sma3	Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, PduO-type, N-terminal	IPR017858	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G46100.1	ATHRS1, HRS1 Histidyl-tRNA synthetase 1 chr3:16928444-16930984 REVERSE LENGTH=486	65%
RefSeq	Arabidopsis thaliana	NP_190196.1	Histidyl-tRNA synthetase 1 [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002326196.1	predicted protein, partial [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: C5XMM1

Fln msg: your sequence is longer than subject: 535 - 486

Fln protein: MAHVSGAARAGAMMFGSNALVCANRWLLLNPSLTFRPPQTWYQYSPNTSLIIISQRPPVRWGRRCLCISQANEASSTGATVTTNTYMEEGEVSIMDKKCGRSTVSASPLNHGEVIDVNPPRGTRDFLPEDMRLRKWLFQKFREVSRLFAFEEVDFPVLESEALFVRKSGEEITEQLYSFVDKGGRRVALRPELTPSLARVVMQKGKALSLPLKWFAIGQCWRYERMTRGRRREHYQWNMDIFGVSGIEAEAELLSAIVTFFKQLGITSSDVGIKVSSRKVLEAVMEHHSIPKDSFSAVCVMVDKIEKMPIEDIKKELRVAGIPSDAVEGILHALSLRSLAELEEFLGSDSGAVAELKLLFSFANEYGYADWLQFDASVVRGLAYYTGTVFEGFDKDRKLRAICGGGRYDCLLSTFGGSDIPACGFGFGDAVIMELLREKNLIPILTQEIDDIVFPLNGELKQAAAMVASNLRKKGRIVDLILEDKRLKWAFKHAERVNAKRLFLVGQAEWECGAVRVKDLATREESDILISDLL*

Protein Length: 536

Fln nts: AGGAAGGATGGGTAAATGGGAATAGAAGACGGTCGAATGGGAGAGACGGAGACGTCAATGGAAGCGTTATGAGGAACCGATGAGAGGCTTGTTGGAAAAATCCGACAGAGAGCTTTTATCTTGATGACAACCTGGTTTCAGTAAGACCGGGGAAGCGGTGAAATTATTCCTCGGTGACTTTATCTGTGATGGTAAGAGGCACAAGTTGTGGATAGCCAAGTATTTAAAGAGCAGATATTACCATCGCATGAA_-_ATGGCACATGTATCTGGCGCGGCGAGAGCAGGCGCCATGATGTTTGGAAGCAATGCTCTTGTGTGTGCCAATAGATGGCTGCTGCTAAACCCTTCTCTAACTTTCAGACCGCCTCAAACGTGGTACCAATATTCCCCCAACACCAGTTTAATCATCATAAGTCAGCGTCCTCCTGTACGTTGGGGTCGTCGTTGTCTCTGCATATCTCAGGCGAATGAAGCTTCTTCTACTGGTGCTACAGTCACAACAAATACTTATATGGAGGAAGGAGAGGTCTCCATTATGGACAAGAAGTGTGGACGATCAACTGTTTCTGCTTCTCCTCTGAATCATGGGGAAGTTATCGATGTTAATCCTCCACGTGGAACCAGAGATTTTCTGCCAGAGGACATGCGGCTTCGCAAATGGCTTTTTCAAAAGTTTCGAGAAGTTTCCAGATTATTTGCATTTGAAGAAGTTGATTTCCCAGTTCTCGAATCTGAAGCACTTTTTGTGAGAAAATCAGGGGAAGAGATAACAGAACAGCTCTACAGTTTTGTAGACAAGGGTGGTCGGCGGGTTGCACTTCGGCCAGAGCTGACACCGTCTTTAGCTCGGGTGGTTATGCAAAAGGGGAAAGCGTTGTCACTTCCTCTCAAATGGTTTGCGATAGGACAATGTTGGCGTTATGAAAGGATGACCAGAGGAAGACGCCGAGAACATTACCAATGGAATATGGATATATTTGGAGTTTCAGGCATAGAGGCTGAAGCAGAACTCCTTTCTGCTATTGTTACATTCTTCAAGCAACTTGGAATTACATCATCTGATGTGGGGATCAAAGTTTCCAGTCGAAAGGTTCTTGAAGCTGTGATGGAGCATCATTCCATACCCAAAGATTCATTTTCAGCAGTTTGTGTCATGGTTGACAAGATTGAGAAAATGCCTATAGAAGACATAAAAAAGGAATTGAGAGTTGCTGGAATTCCATCAGATGCAGTTGAAGGAATTCTGCATGCTTTGTCATTAAGATCACTAGCTGAATTAGAAGAGTTCCTTGGTTCGGACAGTGGGGCAGTTGCTGAACTGAAACTACTATTTTCTTTTGCAAATGAATATGGTTATGCTGATTGGCTTCAGTTTGATGCGTCAGTTGTTCGTGGCCTTGCTTATTACACAGGGACTGTTTTTGAGGGTTTTGACAAAGATCGGAAACTTCGAGCAATATGTGGAGGTGGACGGTATGACTGCCTTCTTTCTACTTTTGGTGGCTCTGACATCCCGGCATGTGGTTTTGGTTTTGGAGATGCTGTCATTATGGAATTGCTTAGGGAGAAAAATTTGATCCCAATTCTAACTCAGGAAATAGATGACATAGTTTTCCCTTTGAATGGAGAGCTTAAGCAAGCAGCTGCCATGGTGGCATCCAATTTACGAAAGAAAGGGCGCATTGTGGATCTCATTCTCGAGGACAAACGCCTGAAATGGGCATTTAAGCATGCAGAAAGAGTAAATGCAAAGAGGTTGTTTCTTGTCGGGCAAGCTGAGTGGGAATGTGGTGCTGTGCGTGTAAAAGATCTTGCAACTAGAGAAGAATCTGATATATTGATTAGTGATTTATTATAA___AACTCTACCTTTCATATCTATTTCTTCAACAATAGATCTCAACATATTTATGATCTTGCAAAGTTTCGAAGGGGGGAAGCAATCTTGTCCAATTTTTCGATCCTTGGATTTTTCTTACATGCATATGTACCTAGAGTTGATGCACATTCAGATTGGAGAAATAGCATGTTATGGAGGTTGGAGATAGAAAAGAGAGATTTATTGGTTGGTCGTAGGCACATGTTTGGAAGGAGACACAAAAACATTTGTCCATTGTAAGAAAGTATTATTCTTTATTTTTTATCTGTAGAGAAATGTTATTTCATATGCTTCTCAAGTATTCAAATTGAGAGATATCCACATTATTAAAATGGAGCTAATGAGTAAGAAATATTGCTTACAAGTTCTGCAGTGCAGAGGAAAACATTTTTCTTTAATTATTAGCTGCAAAGCATTGTCATTTCATATGTTTTTCAAGTCTCAAAATTGAGAAACCTACAACATATGCACTCTTAATTATTGATTTTTGGATAC

Fln Alignment:

Contig482___STVSASPLNHGE----------VIDVNPPRGTRDFLPEDMRLRKWLFQKFREVSRLFAFEEVDFPVLESEALFVRKSGEEITEQLYSFVDKGGRRVALRPELTPSLARVVMQKGKALSLPLKWFAIGQCWXXXXXXXXXXXEHYQWNMDIFGVSGIEAEAELLSAIVTFFKQLGITSSDVGIKVSSRKVLEAVMEHHSIPKDSFSAVCVMVDKIEKMPIEDIKKELRVAGIPSDAVEGIXXXXXXXXXXXXXXXXGSDSGAVAELKLLFSFANEYGYADWLQFDASVVRGLAYYTGTVFEGFDKDRKLRAICGGGRYDCLLSTFGGSDIPACGFGFGDAVIMELLREKNLIPILTQEIDDIVFPLNGELKQAAAMVASNLRKKGRIVDLILEDKRLKWAFKHAERVNAKRLFLVGQAEWECGAVRVKDLATREESDILISDL
C5XMM1_____________SAASSSTLTHGDAASTNGDADGVVDVNPPRGTRDFPPEDMRLRTWLFDQFREVSRLMAFEEVDFPVLESEALFIRKAGEEITQQLYNFEDKGGRRVVLRPEITPSLARLVIKQGKSVSLPLKWFTIGQCWRYERMTRGRRREHYQWNMDIFGVPKVRAEAELLNAIVLLFQHLGITSSDVGIRVSSRKVLQAVLNMYSIPEHLFTEVCVIVDKLGKMTREEIEKELISTGLSSEAVQGIIDVLSLKSLSKLEEVVGSDVEAVADLKKLFSFAEQYGYADWICFDASVVRGLAYYTGIVFEAFDREGKLRAICGGGRYDRLLSTFGSEDIPACGFGFGDAVIVELLKEKGLLPDMSRQIDDIVFPLDEELEGPASSIAASLRKKGRSVDLV-EDKRLKWVFKHAERINASRLILVGNSEWERGMVRVKILSTREEFEVKAGEL

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1563	40			60	1.0
1684	75			25	1.0
1773	14		85		0.993533
1776	85			14	0.993533
1777			85	14	0.993533
1958		80		20	0.999996
2110	10	90			0.90298
2167	55		44		1.0
2199		55	44		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain