SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene450

Length: 3790 nt

UniGene Fasta

>sp_v3.0_unigene450
CGTAAATGGTCCTTCGTTTCCAGATCAAAAAAGGAAGCTTGATGAAGCCGCGAAGCCTTTTCTTTCCGGCAAAGATTCGTCTGAAGACGATCCAGGAAACCTGACATTGAAGCTAGGAGGAAGTTCATACTCATACCCAGATGATACAAATCCTTCCCGTCAAAACAAACGTGTGAGATCAGGTTCCCCTGGTAGTGCTTATCCGATGTGTCAGGTGGACGATTGCCGCACCGATCTTACCAGTGCGAAGGACTACCACAGGCGTCATAAAGTATGTGAAACCCAGACAAAAGCTGCCAAACAACTCGTTGGGAGCCTTATGCAACGCTTTTGTCAGCAGTGCAGCAGATTTCATCCGCTTCAGGAATTTGACGAGGGGAAGAGGAGCTGTAGACGGAGACTTGCTAGGGCACAATAGGCGACGGAGGAAAACCCAGCCAGAGGACGCGTTGCCCCGGGGATTGTTGGCTGCTAGCCAGGAGAACGGTGGTTTAGGGAATTTAGACATTGTGAACCTCGTTAGCATCTTGTCTCGGCTTCAAGGAAACAACAATTCCATGGAGAAATCAAATGTACAGTCGTCTTTGGATGGGGATCAGGTCGTTCAATTGTTGAATAGGATGAACTCCTCGTTCCCTTCATCTCAAAAAGTTGCTCCACCTTCTCAGGGTTTTGATCTGAACATTGCTGAAAACCTTCAATCCCCTAGATCAGAGGTCCCCAAGGCGAACGGCAGTCCATCCACAGGTTTGACCACTGAATTACTGGCTATCCTTTCAGCCTTGACAGGTCCCTCTCAAGATGCCCTCGCCTTGCTCAGAAACAGTCTCGCGAATAACCTGAACGGTAATGTCAAAGCACAGCATCAAAACCTGTTGCCTCCCTCCCCTACTCCTGTCCCACCCCAAAAGCCTCAAGAACGCGACATACAAAGCCAGAAAACAAATCTTATTGTTGACTATGGGGCAAACAACCGCAAGATTAATGCCACTTCTCAAGACAACTCTCTCACACATTTGCCGCTTCGGCTGTTCAATTCTTTGGAGGAAGACAACTCCCCTCCTAACGTGTTTACTCGGAAGTACTTTTCTTCTGATAGCAGCAATCCCACAGAACGATCTCCATCTTCATCACCTCCTGTTGTGCAAAATTTGTTTCCTTTGCATTCTGGAGATGAAAGCAGAGAAAATGATTGTGTTTCTGTCTGCAAGGAAGATAATTTGACACTAGAAACAAGTCCGAGCAACGATAGATGTTCGGCCTACGATCTCTCAAAGCTTGAAAGTAGGGTGCATAACCAGAATTTCATGTCAGGATTTCTTCATCAATCATTAGAGTCCAGGACTGCTGTTGTGCAGCCTAGCTATACTTCCTCCTCAGGATCGGATCAATCTCCTGCTAGCTCCAATTCTGACTCACAGGAGCGAACAGGGCGCATCATTTTCAAGCTTTTTGGGCAGCATCCAAGCAACTTTCCTGGGGCATTGCGTGCGCAGATTCTGGAATGGCTCTCTCACAGCCCGTCTGACATGGAAAGCTATATAAGGCCTGGATGTGTGATTCTCTCGATATTTGTGTCCATGCCATCTGCGAACTGGGAACGGCTACGAGAAGATTTGCCACAACGCCTGAAACTACTTGTTGAAGATTCCAGGACTGATTTCTGGAGATGCGGCAGAGTATTAGTGCAAGCTGAGCAGAGATTAGCCTCTTCCAATGATGGTAAAGTTAGGTTCTGCAGCTCTTGGAGGTCGTGGGATGCTCCAGAAATTTACTTTGTTCAGCCTGTAGCTGTTGTAGCTGGCCAAGAGACCACTGTTACTTTGAGAGGCCATAATTTGGCTACTACTGGCACGAAAATTCTTTGTGCTTACAGAGGAAAGTATACCTCTATTGATGTTCTTCCCGAAGAAGAAGCTTCAGAAAGCATACCGACTGATCATAGGGTGCAGAAGTTTACATTTTCAGGGGGACCACCTAATGTTTTGGGCCGCTGTTTTATAGAGGTGGAGCATGGTTTCAAGGGCAATTGTTTTCCTGTTATTGTTGCAGACCCTATCATCTGTAGAGAGCTGCAAAGCCTTGAATCTGAGATTGAAAATGAGTTCTCGAATGACAAAACAAGCTCCTTAAAAGTTGAACGTTCACAAGAACATTTTCAAGGTTACAGTGCAGCAACAGCTAGGGATGAAGTAATCAGTTTCTTAAATGAGTTAGGATGGCTCTTTCAAAAGAGTACCGAGCGGCAAGCGGAGCTAAACGTTGTGAAGGATGCTTCTTTTCTTGAATTTTCATCTGATCGCTTCAAGTTTCTTTTCATATATGCTGTAGAAAGGGACATGTGTGCTCTTCTGAAGAAGCTTTTGGACATGTTTTTTGAAATGAATGCTGGGAAGGAAGCTTCAGCTCCAGAGTCATCCAAAAACTTGCTTGAAAGTAATTTATTGCACAGGGCAGTGAAGAGAAATTGTAAACAGATGGTAGATTTGCTCCTCAACTATGCTCCCTCACCAAATAACATGAATTTGCTGCAAACAAAATCTTTCATCTTCCCTCCAAATCTGACAGGTCCAGGTGGCCTTACACCATTACATTTGGCAGCCAGCATACGTAATAGTGAGCCCTTGGTAGATGCATTGACAAGTGATCCGCAAGATGTTGGCTTACAATCCTGGAGTACAGCACTGGATTCAAGTGGTCAGACCCCTCACGCATATGCTTTGCTTCGGAATAATCACTCATATAACAGATTGGTTGAAAGAAAATTGGCAGACAGGAAACATGGTCAGGTATCAATAACAATTTCCAACAATGAAGCATCTTTAGATGGGATTGCAGCAGATGTAAACGGGTCGCACACAGGTTCGTCTGTCTTGTCATTGCAGAAGCTTCCTCAAAGTTGTGCGCAATGCATGATTTTTAGTAACAAAAGAGTGAGAAGGATAACAGGTAGTCCAGGAGCTTTGTATCGTCCATATATGCATTCTATTCTGGCAATTGCAGCGGTATGTGTATGTGTTTGCCTTTATTTCCATGGTCCACCACATGTTGGTTCGTCTGGACCATTCAAGTGGGAAAATGTTGATTTCGGTCCCGCTTGAAGTTGTTTTATATATAGCCTTCGTATGATTGCTGTACATGATGTTGTGCCATCGGACTCAATATTCAACCATGAAGGTGTTGCTGTTATTCACAATATGCTATCTTGTCAAAAGACAAGGTAGATTGAGGCGGCAGTTTTATCCAGTCCTGTCCTGTCTGGATACAGCAACAAGAGACTGCAAAAAATAGAGATTATTATGGAATTGCATATCCTTTCGGGCCTCTACTACTGCTAAGAGCTCATTCATATTCTCAGTTATTTTGGGGGCGGGGAAGTATTAATTTAATCTGCATAGCATAGTGTTTTGTTCCTCCACAGAAAAAAGATTCCGACCGGTAGTCAAAGGGTGAACATACAACTAGGGTCTGCTTTCTTGTTACTTTGGATGATGCTCTGGAGGTAACTACTTTCGCTGTGCAGAAAATCCCATTTTACACGCCTACCCTGGCAACATTTACAGGCAGATGATGTTTCTAATTTCCATATATCTGATATTTATGTACTACTCGATGCTGGTGCCCGGGGCATTTTGGAAATTTTTGGCTAAATAAGCGTCTCATTCCAGTAAATAACCAAAAATTGTGGCTAGTTTCATAAATCTTATGCTGTTGTGATAATATTCTTTATGATCTTATGGTTATAAAATAAATGCGCTATTAAATCCATACTATATAGCTCGTTGCAAGG

Ace file of the UniGene sp_v3.0_unigene450

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Squamosa promoter-binding protein, putative n=1 Tax=Ricinus communis RepID=B9R8V3_RICCO	-	-	0.0	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	LIGULELESS1 protein, putative	-	-	6.394e-18	-

Source	Gene names
Sma3	At1g02065; At1g27360; At1g53160; At1g69170; At2g33810; At2g42200; At3g57920; At5g43270; B1168A08.33; B1455F06.12; F12M16.2; F17L21.14; F23O10.24; F4N2.13; GSVIVT00002776001; GSVIVT00002800001; GSVIVT00002959001; GSVIVT00004625001; GSVIVT00008511001; GSVIV

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	megasporogenesis	GO:0009554	Biological Process	-
Sma3	microsporogenesis	GO:0009556	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	positive regulation of flower development	GO:0009911	Biological Process	-
Sma3	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	-
Sma3	inflorescence development	GO:0010229	Biological Process	-
Sma3	regulation of vegetative phase change	GO:0010321	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Transcription factor, SBP-box	IPR004333	-	-
Sma3	Squamosa promoter-binding protein	IPR017238	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQP1

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 743 aas, putative chimeric sequence, your sequence is shorter than subject: 139 - 997

Fln protein: VNGPSFPDQKRKLDEAAKPFLSGKDSSEDDPGNLTLKLGGSSYSYPDDTNPSRQNKRVRSGSPGSAYPMCQVDDCRTDLTSAKDYHRRHKVCETQTKAAKQLVGSLMQRFCQQCSRFHPLQEFDEGKRSCRRRLARAQ*

Protein Length: 140

Fln nts: CGTAAATGGTCCTTCGTTTCCAGATCAAAAAAGGAAGCTTGATGAAGCCGCGAAGCCTTTTCTTTCCGGCAAAGATTCGTCTGAAGACGATCCAGGAAACCTGACATTGAAGCTAGGAGGAAGTTCATACTCATACCCAGATGATACAAATCCTTCCCGTCAAAACAAACGTGTGAGATCAGGTTCCCCTGGTAGTGCTTATCCGATGTGTCAGGTGGACGATTGCCGCACCGATCTTACCAGTGCGAAGGACTACCACAGGCGTCATAAAGTATGTGAAACCCAGACAAAAGCTGCCAAACAACTCGTTGGGAGCCTTATGCAACGCTTTTGTCAGCAGTGCAGCAGATTTCATCCGCTTCAGGAATTTGACGAGGGGAAGAGGAGCTGTAGACGGAGACTTGCTAGGGCACAATAG___GCGACGGAGGAAAACCCAGCCAGAGGACGCGTTGCCCCGGGGATTGTTGGCTGCTAGCCAGGAGAACGGTGGTTTAGGGAATTTAGACATTGTGAACCTCGTTAGCATCTTGTCTCGGCTTCAAGGAAACAACAATTCCATGGAGAAATCAAATGTACAGTCGTCTTTGGATGGGGATCAGGTCGTTCAATTGTTGAATAGGATGAACTCCTCGTTCCCTTCATCTCAAAAAGTTGCTCCACCTTCTCAGGGTTTTGATCTGAACATTGCTGAAAACCTTCAATCCCCTAGATCAGAGGTCCCCAAGGCGAACGGCAGTCCATCCACAGGTTTGACCACTGAATTACTGGCTATCCTTTCAGCCTTGACAGGTCCCTCTCAAGATGCCCTCGCCTTGCTCAGAAACAGTCTCGCGAATAACCTGAACGGTAATGTCAAAGCACAGCATCAAAACCTGTTGCCTCCCTCCCCTACTCCTGTCCCACCCCAAAAGCCTCAAGAACGCGACATACAAAGCCAGAAAACAAATCTTATTGTTGACTATGGGGCAAACAACCGCAAGATTAATGCCACTTCTCAAGACAACTCTCTCACACATTTGCCGCTTCGGCTGTTCAATTCTTTGGAGGAAGACAACTCCCCTCCTAACGTGTTTACTCGGAAGTACTTTTCTTCTGATAGCAGCAATCCCACAGAACGATCTCCATCTTCATCACCTCCTGTTGTGCAAAATTTGTTTCCTTTGCATTCTGGAGATGAAAGCAGAGAAAATGATTGTGTTTCTGTCTGCAAGGAAGATAATTTGACACTAGAAACAAGTCCGAGCAACGATAGATGTTCGGCCTACGATCTCTCAAAGCTTGAAAGTAGGGTGCATAACCAGAATTTCATGTCAGGATTTCTTCATCAATCATTAGAGTCCAGGACTGCTGTTGTGCAGCCTAGCTATACTTCCTCCTCAGGATCGGATCAATCTCCTGCTAGCTCCAATTCTGACTCACAGGAGCGAACAGGGCGCATCATTTTCAAGCTTTTTGGGCAGCATCCAAGCAACTTTCCTGGGGCATTGCGTGCGCAGATTCTGGAATGGCTCTCTCACAGCCCGTCTGACATGGAAAGCTATATAAGGCCTGGATGTGTGATTCTCTCGATATTTGTGTCCATGCCATCTGCGAACTGGGAACGGCTACGAGAAGATTTGCCACAACGCCTGAAACTACTTGTTGAAGATTCCAGGACTGATTTCTGGAGATGCGGCAGAGTATTAGTGCAAGCTGAGCAGAGATTAGCCTCTTCCAATGATGGTAAAGTTAGGTTCTGCAGCTCTTGGAGGTCGTGGGATGCTCCAGAAATTTACTTTGTTCAGCCTGTAGCTGTTGTAGCTGGCCAAGAGACCACTGTTACTTTGAGAGGCCATAATTTGGCTACTACTGGCACGAAAATTCTTTGTGCTTACAGAGGAAAGTATACCTCTATTGATGTTCTTCCCGAAGAAGAAGCTTCAGAAAGCATACCGACTGATCATAGGGTGCAGAAGTTTACATTTTCAGGGGGACCACCTAATGTTTTGGGCCGCTGTTTTATAGAGGTGGAGCATGGTTTCAAGGGCAATTGTTTTCCTGTTATTGTTGCAGACCCTATCATCTGTAGAGAGCTGCAAAGCCTTGAATCTGAGATTGAAAATGAGTTCTCGAATGACAAAACAAGCTCCTTAAAAGTTGAACGTTCACAAGAACATTTTCAAGGTTACAGTGCAGCAACAGCTAGGGATGAAGTAATCAGTTTCTTAAATGAGTTAGGATGGCTCTTTCAAAAGAGTACCGAGCGGCAAGCGGAGCTAAACGTTGTGAAGGATGCTTCTTTTCTTGAATTTTCATCTGATCGCTTCAAGTTTCTTTTCATATATGCTGTAGAAAGGGACATGTGTGCTCTTCTGAAGAAGCTTTTGGACATGTTTTTTGAAATGAATGCTGGGAAGGAAGCTTCAGCTCCAGAGTCATCCAAAAACTTGCTTGAAAGTAATTTATTGCACAGGGCAGTGAAGAGAAATTGTAAACAGATGGTAGATTTGCTCCTCAACTATGCTCCCTCACCAAATAACATGAATTTGCTGCAAACAAAATCTTTCATCTTCCCTCCAAATCTGACAGGTCCAGGTGGCCTTACACCATTACATTTGGCAGCCAGCATACGTAATAGTGAGCCCTTGGTAGATGCATTGACAAGTGATCCGCAAGATGTTGGCTTACAATCCTGGAGTACAGCACTGGATTCAAGTGGTCAGACCCCTCACGCATATGCTTTGCTTCGGAATAATCACTCATATAACAGATTGGTTGAAAGAAAATTGGCAGACAGGAAACATGGTCAGGTATCAATAACAATTTCCAACAATGAAGCATCTTTAGATGGGATTGCAGCAGATGTAAACGGGTCGCACACAGGTTCGTCTGTCTTGTCATTGCAGAAGCTTCCTCAAAGTTGTGCGCAATGCATGATTTTTAGTAACAAAAGAGTGAGAAGGATAACAGGTAGTCCAGGAGCTTTGTATCGTCCATATATGCATTCTATTCTGGCAATTGCAGCGGTATGTGTATGTGTTTGCCTTTATTTCCATGGTCCACCACATGTTGGTTCGTCTGGACCATTCAAGTGGGAAAATGTTGATTTCGGTCCCGCTTGAAGTTGTTTTATATATAGCCTTCGTATGATTGCTGTACATGATGTTGTGCCATCGGACTCAATATTCAACCATGAAGGTGTTGCTGTTATTCACAATATGCTATCTTGTCAAAAGACAAGGTAGATTGAGGCGGCAGTTTTATCCAGTCCTGTCCTGTCTGGATACAGCAACAAGAGACTGCAAAAAATAGAGATTATTATGGAATTGCATATCCTTTCGGGCCTCTACTACTGCTAAGAGCTCATTCATATTCTCAGTTATTTTGGGGGCGGGGAAGTATTAATTTAATCTGCATAGCATAGTGTTTTGTTCCTCCACAGAAAAAAGATTCCGACCGGTAGTCAAAGGGTGAACATACAACTAGGGTCTGCTTTCTTGTTACTTTGGATGATGCTCTGGAGGTAACTACTTTCGCTGTGCAGAAAATCCCATTTTACACGCCTACCCTGGCAACATTTACAGGCAGATGATGTTTCTAATTTCCATATATCTGATATTTATGTACTACTCGATGCTGGTGCCCGGGGCATTTTGGAAATTTTTGGCTAAATAAGCGTCTCATTCCAGTAAATAACCAAAAATTGTGGCTAGTTTCATAAATCTTATGCTGTTGTGATAATATTCTTTATGATCTTATGGTTATAAAATAAATGCGCTATTAAATCCATACTATATAGCTCGTTGCAAGG

Fln Alignment:

Contig450___CQVDDCRTDLTSAKDYHRRHKVCETQTKAAKQLVGSLMQRFCQQCSRFHPLQEFDEGKRSCRRRLAR
B8LQP1_____________CQVPSCEADISHLKGYHRRHRVCLCCANAATVVLDDVPQRYCQQCGKFHLLTDFDEGKRSCRRKLER

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1954	83			16	0.999991
1955	16		83		0.999991
1956			83	16	0.999991
1957			83	16	0.999991
1959	16		83		0.999991
2229	90		10		0.90298
2262	16		83		0.994512
2263			83	16	0.994512
2264	83			16	0.994512
2702		66		33	0.997452
2703	66	33			0.997452
3499	95		4		0.994598
3710	87			12	0.992554
3712	16			83	0.994512
3749	20		80		0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain