SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene420

Length: 1227 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene420

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Malic enzyme n=1 Tax=Picea sitchensis RepID=B8LMR7_PICSI	-	-	0.0	85%
FL-Next	sp=Malic enzyme; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Sma3	Malic enzyme	-	-	6.16571e-44	-

Source	ECs	Term	Type	e value	Identity
Sma3	Malate dehydrogenase (decarboxylating).	EC:1.1.1.39	-	1.341e-18	-

Source	KEGGs	Term	e value	Identity
Sma3	Pyruvate metabolism	00620	1.341e-18	%
Sma3	Carbon fixation in photosynthetic organisms	00710	1.341e-18	%
Sma3	Biosynthesis of terpenoids and steroids	01062	1.341e-18	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	1.341e-18	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	1.341e-18	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	1.341e-18	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	1.341e-18	%
Sma3	Metabolic pathways	01100	1.341e-18	%

Source	Gene names
Sma3	AT4g00570; AT5G11670; At2g13560; At4g00570; CHLREDRAFT_196833; F6N23.16; GSVIVT00018984001; GSVIVT00026767001; LOC_Os10g35960; MAO1; MICPUCDRAFT_43783; MME1; MtrDRAFT_AC148817g45v2; NADP-ME_2; OJ1457_D07.117; OSJNBb0073N24.24; OSTLU_26919; Os07g0496200; O

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	malic enzyme activity	GO:0004470	Molecular Function	-
Sma3	malate dehydrogenase (decarboxylating) activity	GO:0004471	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	GO:0016616	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	malate metabolic process	GO:0006108	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Malic oxidoreductase	IPR001891	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	FAR1 DNA binding domain	IPR004330	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3	Malic enzyme, N-terminal	IPR012301	-	-
Sma3	Malic enzyme, NAD-binding	IPR012302	-	-
Sma3	Malic enzyme, conserved site	IPR015884	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G13560.1	NAD-ME1 NAD-dependent malic enzyme 1 chr2:5650089-5655103 FORWARD LENGTH=623	66%
RefSeq	Arabidopsis thaliana	NP_178980.1	NAD-dependent malic enzyme 1 [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002302483.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMR7

Fln msg: your sequence is shorter than subject: 281 - 601

Fln protein: GAGSAGIGVLNAARKAMARLLGGTESALENARYQFWVLDAMGLVTEARNDIDPDVAPFARKVEELGSQGLAEGSKLTEVVKKVRPDVLIGLTAVGGLFTKEVLEALKESTCVRPVVFAMSNPTSNAECTAEQAFNTVGHHVVFASGSPFLDVDLGNGQIGHSNQGNNMYLFPGIGLGTLLSGARIISDGMLQAAAECLAECMTEEEVQRGIIYPSTSRIREITMEVAASVVREAVAEELVEGYRETDARELRRMSKEETLEHVEKHMWVPNYAPLVYHKQ*

Protein Length: 282

Fln nts: CTGGTGCAGGGAGTGCAGGAATAGGAGTCTTAAATGCTGCAAGAAAAGCAATGGCAAGACTTTTAGGTGGTACAGAATCTGCCTTAGAAAATGCAAGGTACCAGTTCTGGGTACTTGATGCAATGGGTTTGGTTACAGAAGCACGGAATGATATTGACCCTGATGTTGCACCATTTGCCAGAAAAGTCGAAGAACTAGGTTCTCAAGGTTTAGCAGAAGGTTCCAAGCTTACTGAAGTGGTAAAAAAAGTTAGGCCAGATGTGTTGATTGGATTAACTGCGGTTGGAGGTTTATTTACAAAAGAGGTTTTGGAAGCCCTTAAAGAATCAACTTGTGTAAGGCCGGTTGTTTTCGCAATGTCAAATCCAACTAGCAATGCTGAATGCACTGCCGAGCAAGCTTTCAACACTGTGGGACACCATGTAGTTTTTGCAAGCGGAAGTCCATTTCTTGATGTGGATCTTGGAAATGGTCAAATTGGGCATTCCAACCAAGGCAACAATATGTACCTTTTCCCAGGGATTGGGTTGGGTACACTTCTCTCTGGTGCTCGTATCATTTCAGATGGCATGTTACAAGCTGCAGCAGAATGCCTAGCTGAATGCATGACAGAGGAAGAAGTGCAAAGGGGGATTATATATCCCTCAACATCCAGGATTCGTGAGATTACAATGGAGGTAGCTGCATCTGTTGTGAGAGAAGCAGTGGCAGAGGAGCTTGTAGAGGGCTATCGGGAGACAGATGCTAGAGAGCTTCGACGTATGTCAAAGGAAGAGACTTTGGAGCATGTGGAAAAGCATATGTGGGTTCCAAACTATGCACCATTGGTTTACCATAAGCAATGA___GCTATGGAATAAAGACAGCAATAGTCAGTGGCTTTGCATATTCGTTCCCAAGTTGCAACTATGAAATGAAAATTGTCAGACACAATATATATCTCAATAGACTTCGAGTAGCAGGGTAGGATTCCTGGCATCTTATTTTGCATAAGAATCAGAGTTATGACATGAATGTCTCAAGTTGCAACGAAATAATAATGAGCATTACCTGTATTTGTTATAAATACTCAGTTATGTCGATAACTTGGCTTCTCTCTCCACTGTAAGCATTACTGTGCTTTCTATTTTAGGGCGAAATTCTTGAGTATGCTAGTTCATTTAATAAATACAGTTTTTTCCTTGTAGGCAATTCTTTTCACTCTCTTCCAACTCTGTATTATACATGGCA

Fln Alignment:

Contig420___GAGSAGIGVLNAARKAMARLLGGTESALENARYQFWVLDAMGLVTEARNDIDPDVAPFARKVEELGSQGLAEGSKLTEVVKKVRPDVLIGLTAVGGLFTKEVLEALKESTCVRPVVFAMSNPTSNAECTAEQAFNTVGHHVVFASGSPFLDVDLGNGQIGHSNQGNNMYLFPGIGLGTLLSGARIISDGMLQAAAECLAECMTEEEVQRGIIYPSTSRIREITMXXXXXXXXXXXXXXXXXGYRETDARELRRMSKEETLEHVEKHMWVPNYAPLVYH
B8LMR7_____________GAGSAGIGVLNAARKAMARFLGGTESAFENARCQFWVLDAMGLVTEARNDIDPDVAPFARKVEELGSQGLREGSQLTEVVKKVRPDVLIGLTGIGGLFTKEVLEALKESTCVRPVVFAMSNPTSNAECTADQAFNTVGHHIVFASGSLFPDVDLGNGQIGHSNQGNNMYLFPGIGLGTLVSGARLISDGMLQAAAECLAECMTKEEVRKGIIYPSVSRIRNITMKVATAVVREAVAEDLAEGYQDKDARELQRLSKEETLEHVEKHMWVPNYSPLVYH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain