SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene405

Length: 641 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene405 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TPA_inf: class IV HD-Zip protein HDZ43 [Physcomitrella patens]	-	-	1.0e-28	75%
FL-Next	tr=Homeodomain protein HB2; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	73%
Sma3	Homeobox protein, putative	-	-	1.5e-17	-

Source	Gene names
Sma3	ANL2; AT1G05230; AT1G79840.1; ATHB10; ATML1; At1g05230; At1g73360; At1g79840; At3g03260; At3g61150; At4g00730; At4g04890; At4g17710; At4g21750; At5g46880; BIP1A; F17L22.210; F19K16.20; F6N23.10; FCAALL.102; GL2; GL2-1; GL2-2; GL2-4; GL2-5; GL2-6; GL2-7; G

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	epidermal cell differentiation	GO:0009913	Biological Process	-
Sma3	negative regulation of trichoblast fate specification	GO:0010062	Biological Process	-
Sma3	trichome branching	GO:0010091	Biological Process	-
Sma3	anthocyanin accumulation in tissues in response to UV light	GO:0043481	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	cotyledon development	GO:0048825	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Helix-turn-helix motif	IPR000047	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Lipid-binding START	IPR002913	-	-
Sma3		IPR012287	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G00730.1	ANL2, AHDP Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein chr4:299741-304103 REVERSE LENGTH=802	1.0e-26	64%
RefSeq	Arabidopsis thaliana	NP_001118907.1	homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Arabidopsis thaliana]	7.0e-27	64%
RefSeq	Populus trichocarpa	XP_002301331.1	predicted protein [Populus trichocarpa]	2.0e-28	58%

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
406	66		33		0.997452
444	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain