SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene403

Length: 1855 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene403

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DEAD-box ATP-dependent RNA helicase 52B n=3 Tax=Oryza sativa RepID=RH52B_ORYSJ	-	-	0.0	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Sma3	Dead box ATP-dependent RNA helicase, putative	-	-	4.649e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on acid anhydrides, In phosphorous-containing anhydrides.	EC:3.6.1.-	-	4.91e-33	-

Source	KEGGs	Term	e value	Identity
Sma3	Purine metabolism	00230	4.91e-33	%
Sma3	Lipopolysaccharide biosynthesis	00540	4.91e-33	%
Sma3	Folate biosynthesis	00790	4.91e-33	%
Sma3	Metabolic pathways	01100	4.91e-33	%

Source	Gene names
Sma3	At1g31970; At1g55150; At2g33730; At2g42520; At3g06480; At3g58510; At3g58570; At5g14610; At5g63120; B1114D08.16-1; B1156H12.12-1; B1156H12.12-2; CHLREDRAFT_111269; CHLREDRAFT_129561; CHLREDRAFT_131102; CHLREDRAFT_136376; CHLREDRAFT_136620; DBP2; F14N22.21;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	GO:0000184	Biological Process	-
Sma3	rRNA processing	GO:0006364	Biological Process	-
Sma3	mRNA processing	GO:0006397	Biological Process	-
Sma3	RNA splicing	GO:0008380	Biological Process	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	ADC synthase	IPR005801	-	-
Sma3	Protein-tyrosine phosphatase-like, PTPLA	IPR007482	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-
Sma3	Chorismate binding, C-terminal	IPR015890	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G42520.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein chr2:17705382-17708744 FORWARD LENGTH=633	83%
RefSeq	Arabidopsis thaliana	NP_181780.1	DEAD-box ATP-dependent RNA helicase 37 [Arabidopsis thaliana]	83%
RefSeq	Populus trichocarpa	XP_002304009.1	predicted protein [Populus trichocarpa]	85%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7Y4

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MHPAGRRQTMLFSATFPKEIQRLAVDFLSNYIFLAVGRVGSSTDLIVQRVEFVPDADKRSHLMDLIHAQKAEGTHGKQSLTLVFVETKRGADALEYWLSSNGFPATSIHGDKSQQEREQSLRNFKSGAAPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNESNLSLARPLSELMQEANQEVPTWLSNYAARFAYGGGGRNRRSGGGRFGARDYRRDVNRGGGDRPGGAYGSMGNSYGASAGYGGGYGRETSAWD*

Protein Length: 279

Fln nts: TGGCGGAAGATTCGGTGCTCGTGATTATCGTAGAGATGTTAATAGGGGTGGCGGGGATCGTCCTGGAGGGGCATATGGTAGCATGGGAAATTCTTATGGTGCTTCAGCAGGATATGGTGGTGGGTATGGACGCGAGACTAGCGCATGGGATTGAAGTTATCCCTTCCCATGTGAATTTTTAATCAACTGTCTATATGTTCAGCTGGGTAATATCCAGCGCCATGTCTTTGTTGCAGCTTTTGCCTCGACGGTCCATGTGGGTAGCTTTTGCGGCATGGTAAGTTTTGGGCTTCTGGCAAATAACACTGGGCTTTTCAACAGCCCATAGAGAGATATTTGACTCACTAATGTATCATTGGTGTCCAGAGTTTTCTGCTATATTTGC_-_ATGCATCCAGCTGGCAGAAGGCAGACCATGCTCTTCAGTGCTACTTTTCCAAAGGAGATACAGAGGTTGGCTGTGGATTTTCTTTCAAATTATATATTTCTGGCAGTTGGAAGGGTTGGTTCCAGCACAGATCTGATTGTACAAAGAGTAGAATTTGTTCCTGATGCTGATAAACGGAGCCATTTAATGGATCTTATTCATGCTCAGAAAGCTGAAGGTACTCATGGAAAGCAATCTTTGACCTTAGTCTTTGTGGAGACGAAGAGGGGAGCTGATGCATTGGAATATTGGCTATCGTCAAATGGGTTTCCTGCAACAAGTATTCATGGAGATAAATCTCAACAGGAGCGCGAGCAATCTCTGAGAAATTTCAAGAGTGGGGCTGCACCTATTTTAGTTGCCACAGATGTGGCTGCACGTGGACTTGATATTCCACATGTGGCGCATGTAATTAATTTTGATTTGCCAAATGATATTGATGACTATGTCCACCGCATAGGGCGTACAGGTCGTGCTGGTAAATCAGGGTTGGCAACTGCCTTTTTTAATGAAAGTAACCTTTCTCTAGCAAGGCCGTTGTCTGAACTCATGCAAGAAGCAAACCAAGAGGTTCCAACATGGCTATCAAATTATGCTGCAAGGTTTGCATATGGTGGTGGAGGTCGTAATCGTCGATCTGGTGGCGGAAGATTCGGTGCTCGTGATTATCGTAGAGATGTTAATAGGGGTGGCGGGGATCGTCCTGGAGGGGCATATGGTAGCATGGGAAATTCTTATGGTGCTTCAGCAGGATATGGTGGTGGGTATGGACGCGAGACTAGCGCATGGGATTGAAGTTATCCCTTCCCATGTGAATTTTTAATCAACTGTCTATATGTTCAGCTGGGTAATATCCAGCGCCATGTCTTTGTTGCAGCTTTTGCCTCGACGGTCCATGTGGGTAGCTTTTGCGGCATGGTAAGTTTTGGGCTTCTGGCAAATAACACTGGGCTTTTCAACAGCCCATAGAGAGATATTTGACTCACTAATGTATCATTGGTGTCCAGAGTTTTCTGCTATATTTGCTTTTATCCGGCGAGGTGTATATTAGTAGGCAGCTGGCAATTTACATGGAGTAAAATCCTAGTTTGGTAGACATAGCTGAAAGTAGTACTAGATTAGATTTCAGCTGCTGATTCTTGTGCATTGGTAGGTTGCTTTGTTTCTGACATTTGTGCATGAGATTACAGACTGAAAAAGGGCCAATTTTTAATGCAAGATGGCCAATTTATGATACAGAGTCTAGTAGTGTATTCTTCCCAATTTCTTCGGAAGCGAGAGAATTTTCTCATCGTTGATTTGGTTTTTGGCTATATGAGCAAATCGTTGAGTAGACCTAGACCTTTATAAACTGGATTCTCACTATCCCTCACTCGTGCTACTCTTCGCCGATGTTTACCTATGTTGCTTGTATACACGTATTTTCTTTGT

Fln Alignment:

Contig403___RQTMLFSATFPKEIQRLAVDFLSNYIFLAVGRVGSSTDLIVQRVEFVPDADKRSHLMDLIHAQKAEGTHGKQSLTLVFVETKRGADALEYWLSSNGFPATSIHGDKSQQEREQSLRNFKSGAAPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNESNLSLARPLSELMQEANQEVPTWLS
D5A7Y4_____________RTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELITQHVMMLKDGEKMSRLERLLNDLG-------DKTAIVFINTKKTADSLARHLDKVGYRVTTLHGGKTQEQREISLEGFRNKRYNILVATDVAGRGIDIPDVAHVINFDMPSNIEMYTHRIGRTGRAGKTGVATTFLTHHDSDVFYDLKQMLIQSNSPVPPELA

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
592			87	12	0.992554
593	87		12		0.992554
594	87		12		0.992554
595	87		12		0.992554
874	11	88			0.923564
877		87		12	0.992554
878		87		12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain