SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene401

Length: 1505 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene401

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	dentin sialophosphoprotein-like protein [Arabidopsis thaliana] emb\|CAB62610.1\| putative protein [Arabidopsis thaliana] dbj\|BAB09962.1\| unnamed protein product [Arabidopsis thaliana] gb\|AED91231.1\| dentin sialophosphoprotein-like protein [Arabidopsis thali	-	-	4.0e-36	35%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	43%

Source	Gene names
Sma3	VITISV_001976;

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: F6GT17

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 491 - 323

Fln protein: MSPMTTMQTDFDRQAVKRLKVADAGSSGIDPNLKEKSIDQTMNPHYGIGQFKFGTTHRTAQQQMSLPVDARMLPFSQGIKERREEASNQGMVSVMQNRLQNQGYNHNIYGSSQSSSGAGDRNHFNQQLLNSRFMQLGPHNSERLLALQVATMYKRLGESVRPGTLNSQQIPLGRNLEHLFPGSGLAPTITSHTPQSDLKEVESVVTVRTPTAVSLPMMDGHTANQHQYYLSKANIGAPVAVLPSKRKKEVTRLIPWHVDITQAGEHLPTISDAELAWASATNRLTEKEEDEIDNQEEGAGSVPRVKRRLKLTTQLMQQLIPPIPAVVLRGKASVEYENAAYTLAKTALRDACKLASTSSTDMGKKTENENLAFGQLQKPKRLNGNSVLRIAESFMDRAKNLEDEFSRLEASSSLTDLRSDTQDLESSSIVNRLVKHHGRNLPVDHSKVIIEERESSSDSALCTRKLCPQRYVTAVPMPRNLPEGVLCISL*

Protein Length: 492

Fln nts: CTAGCAGG_-_ATGTCACCAATGACAACCATGCAGACTGATTTTGATAGACAAGCGGTGAAAAGGCTAAAGGTTGCAGATGCTGGCAGTAGTGGTATTGATCCAAATCTGAAGGAAAAATCCATCGATCAAACAATGAACCCTCATTATGGGATAGGACAGTTCAAATTTGGGACAACACACAGGACAGCACAACAACAGATGTCTTTGCCAGTGGATGCAAGGATGCTTCCTTTTTCTCAAGGAATCAAAGAAAGACGTGAAGAAGCCTCCAATCAAGGCATGGTTTCAGTTATGCAGAATCGGCTACAAAATCAAGGCTACAATCATAATATTTATGGATCTTCACAGTCGTCTTCAGGAGCGGGTGACAGAAATCATTTCAATCAACAATTATTAAATTCCAGATTTATGCAGCTTGGGCCTCATAACAGTGAGAGACTCTTAGCCTTGCAAGTTGCTACCATGTATAAGAGATTGGGTGAATCTGTAAGGCCTGGAACTTTAAACTCTCAACAGATTCCTCTGGGAAGAAATCTTGAGCATTTGTTCCCTGGCTCAGGATTAGCACCCACAATTACCAGTCACACTCCTCAGTCAGACCTAAAAGAAGTTGAATCTGTGGTAACTGTGCGAACCCCAACAGCTGTGTCATTGCCTATGATGGATGGCCACACTGCAAATCAACATCAATACTATTTATCTAAAGCAAACATTGGAGCTCCAGTTGCAGTTCTGCCTAGTAAACGTAAGAAAGAAGTGACACGGCTCATTCCCTGGCATGTAGATATTACTCAAGCTGGAGAGCATCTTCCCACTATAAGCGATGCTGAGCTAGCATGGGCATCTGCAACAAACCGCTTGACAGAAAAGGAGGAAGATGAGATTGATAACCAAGAAGAAGGGGCAGGATCAGTACCTAGAGTAAAGAGAAGGTTAAAGCTGACAACTCAGCTGATGCAGCAACTAATTCCCCCTATACCTGCTGTGGTTCTTCGTGGAAAAGCAAGTGTGGAATATGAGAATGCAGCATATACTCTTGCTAAAACAGCCTTGCGAGATGCATGCAAGTTGGCTTCCACCTCCAGTACAGATATGGGAAAGAAAACTGAAAACGAAAACTTGGCCTTTGGGCAGCTTCAGAAACCTAAAAGGTTGAATGGGAATTCTGTTTTGAGGATAGCTGAAAGCTTCATGGATAGAGCAAAGAATTTGGAAGATGAGTTCTCCAGGTTGGAGGCTTCATCATCACTGACTGATCTAAGAAGTGACACACAAGATCTAGAGAGTTCGTCAATTGTGAACAGATTGGTCAAACACCATGGAAGAAACCTTCCTGTAGATCATTCTAAAGTTATTATAGAAGAAAGAGAATCTTCTTCTGATTCTGCACTTTGTACTCGCAAACTGTGTCCCCAAAGATATGTTACAGCAGTCCCAATGCCAAGAAATCTTCCAGAGGGAGTGCTATGCATTTCTCTTTAATGTGAAATGATTTTCTATTTTGAC

Fln Alignment:

Contig401___VAVLPSKRKKEVTRLIPWHVDITQAGEHLPTISDAELAWASATNRLTXXXXXXXXXXXXGAGSVPRVKRRLKLTTQLMQQLIPPIPAVVLRGKASVEYENAAYTLAKTALRDACKLASTSSTDMGKKTENENLAFGQLQKPKRLNGNSVLRIAESFMDRAKNLEDEFSRLEASSSLTDLRSDTQDLESSSIVNRLVKHHGRNLPVDHSKVIIEERESSSDSALCTRKLCPQRYVTAVPMPRNLPEGVLCISL
F6GT17_____________VVVRPKKRKSATCELLPWHKEVTQF-RRLQRNSMAELDWAQATNRLIDRVEDEAEIFEDGFPFL-RPKRRLILTTQLMQQLLRPPPAAILSVDASSNCESVVYSVARLTLGDVCSFLSVSGSDSSMSLESGNLLAEKHKTSEKIGDQYFTKVMEDFISRARKLENDLFRLDNRASVLDLRVDCQDLEKFSVINRFAKFHSR------GQADGPETSSSSDATANAQKTCPQRYVTALPMPRNLPDRVQCLSL

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1069		12		87	0.992554
1071			87	12	0.992554
1073			12	87	0.992554
1074		12		87	0.992554
1076		87	12		0.992554
1081		87	12		0.992554
1083	87			12	0.992554
1088	87	12			0.992554
1089	12		87		0.992554
1189			13	86	0.999973
1400		90		10	0.90298
1446	90			10	0.90298
1452		90		10	0.90298
1453		90	10		0.90298
1456	90			10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain