SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene397

Length: 3344 nt

UniGene Fasta

>sp_v3.0_unigene397
CTCTTGTACACTGTTATGACATCACCTCATTGTTTTTTTCGATTTGGATTGCAAATTTCTGACTCCGGGTGAGAGCAGGTATTCGATTTGAGACTATGCAATAAGCCAGTCAGTGGATCAGTCAAAGCATTTTCAGGGTCCACCAATGTGGAGCCCCAACATGCAGATTCCTCCGGCAAAGAAAGAGGGAACTGATATTGGAGCCAAATTGGATGGCTTTCATTTATCAAGTGATACGAGTTTATTTTCAAGCTCGCTGCCTGTTCTCTTTCATGGGAAATTGAATTTGTCAGATAAGGGATGCAGTGGAAAATTAATGGAATCTGCATCCTGTCATTCCAAGAAAGCAGATCAAGGAGAAGATTCTTTTGAATCCCTTCAAGGGATGGAGTCACAAGCTATAGGATATTGCCTTCCTGATGATGAAGAAGAACTTTTGGCAGGCATAGTGGATGATTTTGACAAGAGTGGTCTGTTCGTCCAGATGGAAGAATCAGAAGAATATGATCTGTTTAGCAGTGGAGGTGGAATGGAACTAGATTCAGATTCTCTAGAAAATTTGAATGTAAAAAATAACAATGCAATATCAGATTATATTACTGGTGGTGGTGCTGGTCACTCTGGTGTTTCAAATGTGCCTGCGACAATTGTGGGGGAACATCCTTATGGTGAACATCCCTCTAGAACATTATTTGTGCGGAATATTAACAGTAACGTGGAGGATTCAGAGCTCCGTACTTATTTTGAGCATTATGGTGACATCAGGACGCTCTATACTGCATGCAAGCATCGTGGGTTTGTAATGATATCTTACTATGATATTCGTGCTGCTCGGAATGCAATGCGGGCCCTTCAAAACAAGCCACTACGAAGGCGGAAACTTGACATTCATTTTTCTATTCCAAAGGACAATCCTTCTGATAAAGATATAAACCAAGGAACACTCGTTGTTTTTAACTTGGATCCATCTGTGTCAAATGATGACCTTCGGCGAATTTTTGGAGCTTATGGAGAAGTCAAAGAGATAAGGGAAACCCCCCACAAACGACATCACAAGTTTATTGAGTTTTATGATGTAAGAGCAGCTGAAGAAGCACTTCGAGCTCTAAACAAGAGTGACATTGCTGGCAAGCGTATCAAGCTTGAACCTAGCCGTCCTGGTGGAGCAAGGCGAAGCTTAATGCAGCATTTGAGCCAGGAGCTAGAGCAGGATGTTGGTTCACCATTGATGAATTCACCTCCAGGGCCTTGGGAATACTTCAGCAGTCCTAGTGAAAATGGTTCATTGCAAAGCATAACCTATTCACGTGGATTTGGAAATGTGAATCATCCAGTTAACAAACCATTGCCAGCATTTGGTGCAAACCTTCCACCTTTCCCATCAACTAAAAGTGGAGTTATCAGCAATGACCTGGGAAGAGCTAAACAGATTGAACAAGTATCTTCCATAAACAGTTTTGGAAAGTCAGGCCAGCTCCATCAGTCTCATTCGTTTCCCGATTATGACAGTGGTATGATGCCAGTAATGCATTATAATTCTGCTGGGGCTGTACCAGTACCACGAAGCTCCACCCCTTTTGGAAATCATGAAGCAATTGGAACAGGAAGTAGCGGGTCATTTGGCCACCTAAGCTCAAGCTCAGGTGTTAATGGTACGTTGTCAGGTCATCAATATTTATGGGGCAGCCCAAGTCCTTATTCTCATCATATTACATGGCCCGGACCACCACTTGGACACTCTGTAAATGCTAACGGGTCACAGCCTTACTCTGGGAGACAAAGCCCTTACATAAGTTCAGCTATAGCACCACATCATCATCATGTCGGTTCTGCTCCCTCAGGCGAGCCGTCACTAGATAGACACTTTAGTTACCTGACAGAGACACCTGATATGACTTTTGTAAATCCTAGCTCACTTGGATCGATGAGTTGTGCCAATGGAAGCCCTGTAATAAGTATTGGTGCACATGCTGTTTTGAATGCTGGGGGTGTTTCTATCTCAAACAATAGCAATATTGAATGTGGTTCTCCAATTGGGGTGTTGTCCCCACAGCGAAAAAGCCGAATGTTTTCTGGTGGAGGGTTTACTGGTTCAATTGCAAACTTCTCAGAAGGATTAAATGAACGTGGAAGAAGCCGACGTGGGGACAATAACACAAGTCAAGCAGATAATAAGAAGCAATATCAACTAGACCTGGACAAAATCATGCGTGGTGAAGATGCACGGACAACAATCATGATCAAGAATATCCCAAACAAGTATACTTCAAAGATGCTGTTGGCTACTATTGATGAAAATCATCGCGGGACATATGATTTTCTGTATTTGCCGATTGATTTTAAGAATAAATGCAATGTTGGTTATGCATTCATAAATATGACTTCTCCGTCTCATATCATTCCTTTTTATCAGGGATTTAATGGAAAGAAATGGGAAAAGTTCAACAGTGAGAAGGTTGCATCTCTAGCATATGCTCGAATTCAGGGAAAAGCTGCTCTTATAGCACATTTTCAGAATTCTAGCCTGATGAATGAAGATAAGCGGTGCCGACCTATTCTTTTTCAACCTGGGGCAGCAGGAACTGGGGATCAGGAAACATTCGCAATGGGACCAGATGTTAAGGTCCATCCTTCAGATTACTTGGCTGATGGAAATGCACGTGAAAGTCTAATAATTGCAAATAAGGATGATTCTGTATCAAATAGTGACAAGATTCTTAATGATGCCGACTTTTATGAAGAATTGACGAGCGAAATAAGCAAGTTGCTCGATCATTCTTGACATCAAAACTGTGTGTATAAATAAAGAGTGCCTTGTTAATTATAGGCTTCTTGTAGGATGTACATTTCGAATTGTTTTTTTTTCCTCTTTTTCTTTTTTCACTTGTTACAGTGGCCATCTTTTGCAGCAATGGTGCTGGAAGACTGATTTTTAGTGGTCTCATTTTGCTTCATCAAAAGTGCAGAGACCTTTGTTCATTTCTGTAATTATAGAGAGGCAACATGATTAATTAGTTTGTGTTGAGAAGCCGGCAATATACTCGGGTAAATCGACAACTACAAAGGACTTGTGGTAAACATCAAGTCTCCTGCTGAATCGAGCCTGAGCAAGTGTACAGGTGAACTGAGCTATCCAGGTGGTTTTATTTGGCTGGTAATTGCCATAGTTTATGTAAATCTATGTATCTATCAACATTTACCTCAACGGTAAATAAATTGTTGGAAGTCTGTTATGAAACTCATTTATTCTTGTGTGGTGTTTTAAAATACCCTGAATAGTGTTTTCACCGTTAACTGTGTAATTTATGCTAATTTTCTAACTTCCCCGTTTCTTTCGATTTCAT

Ace file of the UniGene sp_v3.0_unigene397

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	MEI2-like protein 5 [Arabidopsis thaliana] ref\|NP_849727.1\| MEI2-like protein 5 [Arabidopsis thaliana] sp\|Q8VWF5.1\|AML5_ARATH RecName: Full=Protein MEI2-like 5; Short=AML5; AltName: Full=MEI2-like protein 5 gb\|AAL32691.1\| RNA-binding protein MEI2, putativ	-	-	52%
FL-Next	sp=Protein MEI2-like 2; Oryza sativa subsp. japonica (Rice).	-	-	51%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	RNA recognition motif 2	IPR007201	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G29400.1	AML5, ML5 MEI2-like protein 5 chr1:10290393-10293696 REVERSE LENGTH=800	52%
RefSeq	Arabidopsis thaliana	NP_174233.2	MEI2-like protein 5 [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002302143.1	predicted protein, partial [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q6ZI17

Fln msg: your sequence is longer than subject: 879 - 848

Fln protein: MWSPNMQIPPAKKEGTDIGAKLDGFHLSSDTSLFSSSLPVLFHGKLNLSDKGCSGKLMESASCHSKKADQGEDSFESLQGMESQAIGYCLPDDEEELLAGIVDDFDKSGLFVQMEESEEYDLFSSGGGMELDSDSLENLNVKNNNAISDYITGGGAGHSGVSNVPATIVGEHPYGEHPSRTLFVRNINSNVEDSELRTYFEHYGDIRTLYTACKHRGFVMISYYDIRAARNAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNDDLRRIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEEALRALNKSDIAGKRIKLEPSRPGGARRSLMQHLSQELEQDVGSPLMNSPPGPWEYFSSPSENGSLQSITYSRGFGNVNHPVNKPLPAFGANLPPFPSTKSGVISNDLGRAKQIEQVSSINSFGKSGQLHQSHSFPDYDSGMMPVMHYNSAGAVPVPRSSTPFGNHEAIGTGSSGSFGHLSSSSGVNGTLSGHQYLWGSPSPYSHHITWPGPPLGHSVNANGSQPYSGRQSPYISSAIAPHHHHVGSAPSGEPSLDRHFSYLTETPDMTFVNPSSLGSMSCANGSPVISIGAHAVLNAGGVSISNNSNIECGSPIGVLSPQRKSRMFSGGGFTGSIANFSEGLNERGRSRRGDNNTSQADNKKQYQLDLDKIMRGEDARTTIMIKNIPNKYTSKMLLATIDENHRGTYDFLYLPIDFKNKCNVGYAFINMTSPSHIIPFYQGFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFQPGAAGTGDQETFAMGPDVKVHPSDYLADGNARESLIIANKDDSVSNSDKILNDADFYEELTSEISKLLDHS*

Protein Length: 880

Fln nts: CTCTTGTACACTGTTATGACATCACCTCATTGTTTTTTTCGATTTGGATTGCAAATTTCTGACTCCGGGTGAGAGCAGGTATTCGATTTGAGACTATGCAATAAGCCAGTCAGTGGATCAGTCAAAGCATTTTCAGGGTCCACCA_-_ATGTGGAGCCCCAACATGCAGATTCCTCCGGCAAAGAAAGAGGGAACTGATATTGGAGCCAAATTGGATGGCTTTCATTTATCAAGTGATACGAGTTTATTTTCAAGCTCGCTGCCTGTTCTCTTTCATGGGAAATTGAATTTGTCAGATAAGGGATGCAGTGGAAAATTAATGGAATCTGCATCCTGTCATTCCAAGAAAGCAGATCAAGGAGAAGATTCTTTTGAATCCCTTCAAGGGATGGAGTCACAAGCTATAGGATATTGCCTTCCTGATGATGAAGAAGAACTTTTGGCAGGCATAGTGGATGATTTTGACAAGAGTGGTCTGTTCGTCCAGATGGAAGAATCAGAAGAATATGATCTGTTTAGCAGTGGAGGTGGAATGGAACTAGATTCAGATTCTCTAGAAAATTTGAATGTAAAAAATAACAATGCAATATCAGATTATATTACTGGTGGTGGTGCTGGTCACTCTGGTGTTTCAAATGTGCCTGCGACAATTGTGGGGGAACATCCTTATGGTGAACATCCCTCTAGAACATTATTTGTGCGGAATATTAACAGTAACGTGGAGGATTCAGAGCTCCGTACTTATTTTGAGCATTATGGTGACATCAGGACGCTCTATACTGCATGCAAGCATCGTGGGTTTGTAATGATATCTTACTATGATATTCGTGCTGCTCGGAATGCAATGCGGGCCCTTCAAAACAAGCCACTACGAAGGCGGAAACTTGACATTCATTTTTCTATTCCAAAGGACAATCCTTCTGATAAAGATATAAACCAAGGAACACTCGTTGTTTTTAACTTGGATCCATCTGTGTCAAATGATGACCTTCGGCGAATTTTTGGAGCTTATGGAGAAGTCAAAGAGATAAGGGAAACCCCCCACAAACGACATCACAAGTTTATTGAGTTTTATGATGTAAGAGCAGCTGAAGAAGCACTTCGAGCTCTAAACAAGAGTGACATTGCTGGCAAGCGTATCAAGCTTGAACCTAGCCGTCCTGGTGGAGCAAGGCGAAGCTTAATGCAGCATTTGAGCCAGGAGCTAGAGCAGGATGTTGGTTCACCATTGATGAATTCACCTCCAGGGCCTTGGGAATACTTCAGCAGTCCTAGTGAAAATGGTTCATTGCAAAGCATAACCTATTCACGTGGATTTGGAAATGTGAATCATCCAGTTAACAAACCATTGCCAGCATTTGGTGCAAACCTTCCACCTTTCCCATCAACTAAAAGTGGAGTTATCAGCAATGACCTGGGAAGAGCTAAACAGATTGAACAAGTATCTTCCATAAACAGTTTTGGAAAGTCAGGCCAGCTCCATCAGTCTCATTCGTTTCCCGATTATGACAGTGGTATGATGCCAGTAATGCATTATAATTCTGCTGGGGCTGTACCAGTACCACGAAGCTCCACCCCTTTTGGAAATCATGAAGCAATTGGAACAGGAAGTAGCGGGTCATTTGGCCACCTAAGCTCAAGCTCAGGTGTTAATGGTACGTTGTCAGGTCATCAATATTTATGGGGCAGCCCAAGTCCTTATTCTCATCATATTACATGGCCCGGACCACCACTTGGACACTCTGTAAATGCTAACGGGTCACAGCCTTACTCTGGGAGACAAAGCCCTTACATAAGTTCAGCTATAGCACCACATCATCATCATGTCGGTTCTGCTCCCTCAGGCGAGCCGTCACTAGATAGACACTTTAGTTACCTGACAGAGACACCTGATATGACTTTTGTAAATCCTAGCTCACTTGGATCGATGAGTTGTGCCAATGGAAGCCCTGTAATAAGTATTGGTGCACATGCTGTTTTGAATGCTGGGGGTGTTTCTATCTCAAACAATAGCAATATTGAATGTGGTTCTCCAATTGGGGTGTTGTCCCCACAGCGAAAAAGCCGAATGTTTTCTGGTGGAGGGTTTACTGGTTCAATTGCAAACTTCTCAGAAGGATTAAATGAACGTGGAAGAAGCCGACGTGGGGACAATAACACAAGTCAAGCAGATAATAAGAAGCAATATCAACTAGACCTGGACAAAATCATGCGTGGTGAAGATGCACGGACAACAATCATGATCAAGAATATCCCAAACAAGTATACTTCAAAGATGCTGTTGGCTACTATTGATGAAAATCATCGCGGGACATATGATTTTCTGTATTTGCCGATTGATTTTAAGAATAAATGCAATGTTGGTTATGCATTCATAAATATGACTTCTCCGTCTCATATCATTCCTTTTTATCAGGGATTTAATGGAAAGAAATGGGAAAAGTTCAACAGTGAGAAGGTTGCATCTCTAGCATATGCTCGAATTCAGGGAAAAGCTGCTCTTATAGCACATTTTCAGAATTCTAGCCTGATGAATGAAGATAAGCGGTGCCGACCTATTCTTTTTCAACCTGGGGCAGCAGGAACTGGGGATCAGGAAACATTCGCAATGGGACCAGATGTTAAGGTCCATCCTTCAGATTACTTGGCTGATGGAAATGCACGTGAAAGTCTAATAATTGCAAATAAGGATGATTCTGTATCAAATAGTGACAAGATTCTTAATGATGCCGACTTTTATGAAGAATTGACGAGCGAAATAAGCAAGTTGCTCGATCATTCTTGA___CATCAAAACTGTGTGTATAAATAAAGAGTGCCTTGTTAATTATAGGCTTCTTGTAGGATGTACATTTCGAATTGTTTTTTTTTCCTCTTTTTCTTTTTTCACTTGTTACAGTGGCCATCTTTTGCAGCAATGGTGCTGGAAGACTGATTTTTAGTGGTCTCATTTTGCTTCATCAAAAGTGCAGAGACCTTTGTTCATTTCTGTAATTATAGAGAGGCAACATGATTAATTAGTTTGTGTTGAGAAGCCGGCAATATACTCGGGTAAATCGACAACTACAAAGGACTTGTGGTAAACATCAAGTCTCCTGCTGAATCGAGCCTGAGCAAGTGTACAGGTGAACTGAGCTATCCAGGTGGTTTTATTTGGCTGGTAATTGCCATAGTTTATGTAAATCTATGTATCTATCAACATTTACCTCAACGGTAAATAAATTGTTGGAAGTCTGTTATGAAACTCATTTATTCTTGTGTGGTGTTTTAAAATACCCTGAATAGTGTTTTCACCGTTAACTGTGTAATTTATGCTAATTTTCTAACTTCCCCGTTTCTTTCGATTTCAT

Fln Alignment:

Contig397___PVLFHGKLNLSDKGCSGKLMESASCHSKKADQGEDSFESLQGMESQAIGYCLPDDEEELLAGIVDDFDKSGLFVQMEESEEYDLFSSGGGMELDSDSLENLNVK-NNNAISDYITGGGAGHSGVSNVPATIVGEHPYGEHPSRTLFVRNINSNVEDSELRTYFEHYGDIRTLYTACKHRGFVMISYYDIRAARNAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNDDLRRIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEEALRALNKSDIAGKRIKLEPSRPGGARRSLMQHLSQELEQD---------VGSPLMNSPPGPWEYFSSPSENGSLQSITYSRGFGNVNHPVNKPLPAFGANLPPFPSTKSGVISNDLGRAKQIEQVSSINSFGKSGQLHQSHSFPDYDSGMMPVMHYNSAGAVPVPRSSTPFGNHEAIXXXXXXXXXXXXXXXXVNGTLSGHQYLWGSPSPYSHHI---TWPGPPLGHSVNANGSQP-----YSGRQSPYISSAIAPHHHHVGSAPSGEPSLDRHFSYLTETPDMTFVNPSSLGSM----SCANGSP-VISIGAHAVLNAGGVSISNNSNIECGSPIGVLSPQRKSRMFSGGGFTGSIANFSEGLNERGRSRRGDNNTSQADNKKQYQLDLDKIMRGEDARTTIMIKNIPNKYTSKMLLATIDENHRGTYDFLYLPIDFKNKCNVGYAFINMTSPSHIIPFYQGFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFQPGAAGTGDQETFAMGPDVKVHPSDYLADGNARESLIIANKDDSVSN
Q6ZI17_____________PVLPHEKINFLDSARGTPLMDDASAKLKELDDDPEGKDYKFDFDLRQIDDLLPN-EDDLFAGITNEIEPAGQTNSMEELEEFDVFGSGGGMELDTDPVESITAGLGNTSIADGLRGNGVNHFGPSNSASTVAGEHPYGEHPSRTLFVRNINSNVDDTELRSLFEQYGDIRTLYTATKHRGFVMISYFDIRAARGAMRGLQNKPLRRRKLDIHFSIPKENPSDKDLNQGTLVIFNLDPSVSNEEVRQIFGTYGEVKEIRETPNKKHHKFIEFYDVRAAEAALRSLNKSEIAGKRIKLEPSRPGGTRRNLMQQLGHDIDQDEPRSYRIPHVGSPIASSPPGAWAQYSSPTDNNLLQAFNAS-PTGNGMSPIGMP-PSLISN-----AVKIAPIGKDSNWSK-YDKVFSNNNQPHGAAFQHSHSYQDHKSEHM---------------SSSP-------------------------GTLTGPEFLWGSPKPYSEHAQSPIWRPPAIGHAIPSNTRSQGQGLLYGGRQASLFGSQDQLHHHHVGSAPSGAP-FESHFGFLPESPETSYMNQVRFGNIGNIGSGRNGTGLMLNMAARASVNPVSALSGNMSDNNSSSFRPILSPRLGQSFYGNPTYQGPGSFGLDNSIERGRNRRVDSSVFQADSKKQYQLDLEKIRKGDDTRTTLMIKNIPNKYTSKMLLAAIDEFHKGTYDFFYLPIDFKNKCNVGYAFINMISPVHIVSFYQAFNGKKWEKFNSEKVASLAYARIQGRTALISHFQNSSLMNEDKRCRPILFHSNGPDAGNQEPFPIN-GICIHMP--LEDGAIATGDPFGNEEDNNQN

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
689		33		66	1.0
715		33		66	1.0
830	20		80		0.995493
833		80		20	0.995493
1303	33			66	0.997452
1305		66	33		0.997452
1306	66			33	0.997452
1431	12			87	0.992554
1434	87		12		0.992554
1435	87		12		0.992554
1584	90		10		0.90298
1802	80		20		0.995493
1929	14		85		0.993533
1933			14	85	0.993533
2590	12			87	0.992554
2591		87		12	0.992554
2592	87		12		0.992554
2593			87	12	0.992554
2722		11		88	0.923564
2793			75	25	0.996473
3244		13		86	0.999973
3254		27		72	1.0
3255	11			88	0.923564
3256	11		88		0.923564
3257	11			88	0.923564
3258	11		88		0.923564
3259	11			88	0.923564
3260	11		88		0.923564
3296			20	80	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
1811	1822	CAT CAT CAT CAT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain