SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene394

Length: 2851 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene394
CGGGAAGATTTTTCTAGCCCTGCATTGTGTTATATTCAGATCATTACTTCACTTCATTGCATTACCTGTGACAGGCAGGTAAAATGGATGCGCATAATGGAGACCAGAAAGTGGTGTTAGAGGAAGAACAGTCGCTGATTGAAGAGGTGGCATTGGTGGTGCCGGTGACAGATGATCCATCTCTCCCCGTCTTTACATTTCGTGTGTGGGTTCTGGGATGCGTGTCATGTGTTCTGCTCATGTTTGTGAACACATTCTTCTCCTACAGAACCCAGCCCCTCACCATATCTGGCATTTTAGCCCAGATTTTGGTGTTGCCCATTGGGAAATTCATGGCAGCCACTCTCCCAACTAAGAAATTGCGGGTACCCTATTTTGGATGGGAGTGGAGTGTGAATCCAGGCCCCTTCAACATGAAAGAGCATGTTCTCATAACCATCTTTGCTAACTCTGGCGTCTCATATGGCGGTGGAGATGCATATTCAATTGGGGCAATCAATGTCATGAAAGCTTTTTACAAGCAAAATGTTAGCTTTATTGCAGCTCTCATCATCGTGCTCACAACGCAGGTTTTGGGTTATGGCTGGGCTGGTTTGCTGAGGAAGTATCTCGTAGACCCCGCAGATATGTGGTGGCCTTCCAACTTGGCGCAGGTCTCTCTCTTCAGGGCTCTTCATGAAAAGGACCATTCTCGGAAGAGACTCTCACGTATGCAATTCTTCACAATCTTTACAGTGGCCAGCTTCGCATACTACACACTGCCTGGATACATGTTCACAATTCTAACATTTTTCTCATGGGTTTGTTGGATATGGCCTCATAATATCACAGCTAATCAACTTGGTTCAGGATACAAGGGTTTAGGTCTAGGAGCTTTCTCCTTTGATTGGGCTGGAATTTCAGCATATCATGGAAGTCCCCTAGTCACACCATGGTTTTCAACCTTGAATGTTGCCGTCGGGTTTGTGATATTCATCTACATAATCATGCCATTATCTTACTGGAAATATGAAATCTTCGAAGCTAGGAAGTTCCCCCTTTTCTCTAGTGATTTGTTTACTGCTACTGGTCAGAAATACAATACAACACAGATCTTGACACCGCAGTTTAATTTGAATATAAGGGCTTATAATGACTATGGAAAGCTATATCTCACCCCTCTCTTTGCTCTTTCTATTGGATCGGGCTTTGCAAGAATTGCAGCAACTTTTACACATGTGCTCCTATTCAATGGACATGACATTCTGAAGAGGAGCAGATCTGCTCTAAATGCTGATAAATTAGATGTGCATGCACGCTTGATGAAGAATTATAAGGGAGTCCCGGAATGGTGGTTTCTCATCTTGTTAGTTGGCAGCGTGGCATTCTGTATTTTATTATCATTTGTATGGAAGGATGAGGTTCAAATTCCATGGTGGGGTTTGGTATTAGCATGTGCATTGGCCTGGGTGATAACTCTTCCAATCGGAGTCATTCAAGCAACTACAAACCAGCAACCAGGTTATGATATTATAGCACAGTACATGTTTGGGTACGTCTTGCCGGGGAAACCTATAGCGAATCTATTGTTCAAGATTTACGGCAGGATAAGTAGCATACATGCACTTTCTTTCCTTGCGGACCTCAAGCTTGGTCACTATATGAAAATTCCTCCACGTTGTATGTACGCTGCTCAGCTTGTGGGCACACTTCTAGCAGGCGTGGTGAATCTGGTTGTTGCTTGGTGGATGCTGGAATCTATAGATAACATCTGTAATGTGGAAGCTTTACCTCCTGACAGCCCATGGACATGTCCAAAGTACAGAGTAACATTTGATCAATCTGTCATTTGGGGTCTTGTCGGTCCAAGGCGCATGTTTGGAAACCATCAGCTGTATGAAAATCTGGTCTGGCTTTTCCTTGTGGGTGCACTTCTCCCTGTGCCATTTTGGATTTTGAGTAAGCTGTTCCCCAAGCAAAAATGGATTTCACAGATAAACATGCCTGTCCTTACATATGGGTTCGCTGGCATGCCTCCTGCCACTCCTGCCAACATTGCTTCTTGGATCATAACAGGTACTATCTTCAATTATTTTGTATTCCGCTACAGGAAGAGGTGGTGGCAGCGATACAATTATGTGCTTTCTGCAGCCCTAGATGCTGGTACAGCATTTATGGGAGTGCTGTTGTACTTCGCACTTGGTATGCAGCAGAAGAATTTAACCTGGTGGGGGACAGAGCTGGACCATTGCCCACTTGCTTCCTGTCCAACTGCCCCCGGCATTGTTGTCAAGGGATGTCCAGTGTTCTGATTATCAGCTTTTCTCATATGCAATAGGATTTAGTTCTCTTTTCCTGAGGAGAACATATTGCTACGCCGTTACTTTTACAGCTCAAAAGAAGAAGTTCTCTTGTACTTGTCGAATTTCTTGGCAGTATAAGTTTGTCAGAATAATTCTGCTATCTTCAGCAGCTAAGCGAGGTGGCTTTTATAAATAGCATGGAAGAAATACAAACTTAACGATTCCAAGTACAGAAGGAATTCAATCATGATTACTGGAAGGCCTCTTATAAATAGCATGGAAGAAATACAAACTTCACGATTCCAAGTACAGAAGGAATTCAATCATGACTACTGGAAGGCCTCTGGATCCCCTGAAGGAATTTCTATGTACGGTCTTATAGAGTTTTTGGAATGTAATTCTAGCCTCTCCTTGTATTTCCAACATGTACATTTGTCTACTGCATTAATAATAAATGTTCTTAGAGAAATAGAAGTGCCTAACTATTCGGCCACAAAGGATCCTGTCTCAGGGTGCAGTGACCATTGTTTACTATTGAATGGTATTTTGCCATGGTATGCATTTGATAG

Ace file of the UniGene sp_v3.0_unigene394 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	oligopeptide transporter OPT family protein [Musa acuminata]	-	-	0.0	74%
FL-Next	sp=Oligopeptide transporter 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	73%
Sma3	Oligopeptide transporter OPT family	-	-	1.292e-30	-

Source	Gene names
Sma3	12.t00046; At1g09930; At4g10770; At4g16370; At4g26590; At4g27730; At5g53510; At5g53520; At5g55930; At5g64410; B1053A04.20-1; B1053A04.20-2; F21M12.32; FCAALL.72; GSVIVT00000539001; GSVIVT00004656001; GSVIVT00004853001; GSVIVT00005733001; GSVIVT00008167001

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	S-adenosylmethionine-dependent methyltransferase activity	GO:0008757	Molecular Function	-
Sma3	oligopeptide transporter activity	GO:0015198	Molecular Function	-
Sma3	rRNA processing	GO:0006364	Biological Process	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p	IPR001678	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Tetrapeptide transporter, OPT1/isp4	IPR004648	-	-
Sma3	Oligopeptide transporter OPT superfamily	IPR004813	-	-
Sma3	Nop2p	IPR011023	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Deoxyribonuclease, TatD-related, conserved site	IPR018228	-	-
Sma3	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site	IPR018314	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G16370.1	ATOPT3, OPT3 oligopeptide transporter chr4:9247514-9250071 REVERSE LENGTH=737	73%
RefSeq	Arabidopsis thaliana	NP_567493.5	oligopeptide transporter [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002308764.1	oligopeptide transporter OPT family [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O23482

Fln msg:

Fln protein: MDAHNGDQKVVLEEEQSLIEEVALVVPVTDDPSLPVFTFRVWVLGCVSCVLLMFVNTFFSYRTQPLTISGILAQILVLPIGKFMAATLPTKKLRVPYFGWEWSVNPGPFNMKEHVLITIFANSGVSYGGGDAYSIGAINVMKAFYKQNVSFIAALIIVLTTQVLGYGWAGLLRKYLVDPADMWWPSNLAQVSLFRALHEKDHSRKRLSRMQFFTIFTVASFAYYTLPGYMFTILTFFSWVCWIWPHNITANQLGSGYKGLGLGAFSFDWAGISAYHGSPLVTPWFSTLNVAVGFVIFIYIIMPLSYWKYEIFEARKFPLFSSDLFTATGQKYNTTQILTPQFNLNIRAYNDYGKLYLTPLFALSIGSGFARIAATFTHVLLFNGHDILKRSRSALNADKLDVHARLMKNYKGVPEWWFLILLVGSVAFCILLSFVWKDEVQIPWWGLVLACALAWVITLPIGVIQATTNQQPGYDIIAQYMFGYVLPGKPIANLLFKIYGRISSIHALSFLADLKLGHYMKIPPRCMYAAQLVGTLLAGVVNLVVAWWMLESIDNICNVEALPPDSPWTCPKYRVTFDQSVIWGLVGPRRMFGNHQLYENLVWLFLVGALLPVPFWILSKLFPKQKWISQINMPVLTYGFAGMPPATPANIASWIITGTIFNYFVFRYRKRWWQRYNYVLSAALDAGTAFMGVLLYFALGMQQKNLTWWGTELDHCPLASCPTAPGIVVKGCPVF*

Protein Length: 737

Fln nts: CGGGAAGATTTTTCTAGCCCTGCATTGTGTTATATTCAGATCATTACTTCACTTCATTGCATTACCTGTGACAGGCAGGTAAA_-_ATGGATGCGCATAATGGAGACCAGAAAGTGGTGTTAGAGGAAGAACAGTCGCTGATTGAAGAGGTGGCATTGGTGGTGCCGGTGACAGATGATCCATCTCTCCCCGTCTTTACATTTCGTGTGTGGGTTCTGGGATGCGTGTCATGTGTTCTGCTCATGTTTGTGAACACATTCTTCTCCTACAGAACCCAGCCCCTCACCATATCTGGCATTTTAGCCCAGATTTTGGTGTTGCCCATTGGGAAATTCATGGCAGCCACTCTCCCAACTAAGAAATTGCGGGTACCCTATTTTGGATGGGAGTGGAGTGTGAATCCAGGCCCCTTCAACATGAAAGAGCATGTTCTCATAACCATCTTTGCTAACTCTGGCGTCTCATATGGCGGTGGAGATGCATATTCAATTGGGGCAATCAATGTCATGAAAGCTTTTTACAAGCAAAATGTTAGCTTTATTGCAGCTCTCATCATCGTGCTCACAACGCAGGTTTTGGGTTATGGCTGGGCTGGTTTGCTGAGGAAGTATCTCGTAGACCCCGCAGATATGTGGTGGCCTTCCAACTTGGCGCAGGTCTCTCTCTTCAGGGCTCTTCATGAAAAGGACCATTCTCGGAAGAGACTCTCACGTATGCAATTCTTCACAATCTTTACAGTGGCCAGCTTCGCATACTACACACTGCCTGGATACATGTTCACAATTCTAACATTTTTCTCATGGGTTTGTTGGATATGGCCTCATAATATCACAGCTAATCAACTTGGTTCAGGATACAAGGGTTTAGGTCTAGGAGCTTTCTCCTTTGATTGGGCTGGAATTTCAGCATATCATGGAAGTCCCCTAGTCACACCATGGTTTTCAACCTTGAATGTTGCCGTCGGGTTTGTGATATTCATCTACATAATCATGCCATTATCTTACTGGAAATATGAAATCTTCGAAGCTAGGAAGTTCCCCCTTTTCTCTAGTGATTTGTTTACTGCTACTGGTCAGAAATACAATACAACACAGATCTTGACACCGCAGTTTAATTTGAATATAAGGGCTTATAATGACTATGGAAAGCTATATCTCACCCCTCTCTTTGCTCTTTCTATTGGATCGGGCTTTGCAAGAATTGCAGCAACTTTTACACATGTGCTCCTATTCAATGGACATGACATTCTGAAGAGGAGCAGATCTGCTCTAAATGCTGATAAATTAGATGTGCATGCACGCTTGATGAAGAATTATAAGGGAGTCCCGGAATGGTGGTTTCTCATCTTGTTAGTTGGCAGCGTGGCATTCTGTATTTTATTATCATTTGTATGGAAGGATGAGGTTCAAATTCCATGGTGGGGTTTGGTATTAGCATGTGCATTGGCCTGGGTGATAACTCTTCCAATCGGAGTCATTCAAGCAACTACAAACCAGCAACCAGGTTATGATATTATAGCACAGTACATGTTTGGGTACGTCTTGCCGGGGAAACCTATAGCGAATCTATTGTTCAAGATTTACGGCAGGATAAGTAGCATACATGCACTTTCTTTCCTTGCGGACCTCAAGCTTGGTCACTATATGAAAATTCCTCCACGTTGTATGTACGCTGCTCAGCTTGTGGGCACACTTCTAGCAGGCGTGGTGAATCTGGTTGTTGCTTGGTGGATGCTGGAATCTATAGATAACATCTGTAATGTGGAAGCTTTACCTCCTGACAGCCCATGGACATGTCCAAAGTACAGAGTAACATTTGATCAATCTGTCATTTGGGGTCTTGTCGGTCCAAGGCGCATGTTTGGAAACCATCAGCTGTATGAAAATCTGGTCTGGCTTTTCCTTGTGGGTGCACTTCTCCCTGTGCCATTTTGGATTTTGAGTAAGCTGTTCCCCAAGCAAAAATGGATTTCACAGATAAACATGCCTGTCCTTACATATGGGTTCGCTGGCATGCCTCCTGCCACTCCTGCCAACATTGCTTCTTGGATCATAACAGGTACTATCTTCAATTATTTTGTATTCCGCTACAGGAAGAGGTGGTGGCAGCGATACAATTATGTGCTTTCTGCAGCCCTAGATGCTGGTACAGCATTTATGGGAGTGCTGTTGTACTTCGCACTTGGTATGCAGCAGAAGAATTTAACCTGGTGGGGGACAGAGCTGGACCATTGCCCACTTGCTTCCTGTCCAACTGCCCCCGGCATTGTTGTCAAGGGATGTCCAGTGTTCTGA___TTATCAGCTTTTCTCATATGCAATAGGATTTAGTTCTCTTTTCCTGAGGAGAACATATTGCTACGCCGTTACTTTTACAGCTCAAAAGAAGAAGTTCTCTTGTACTTGTCGAATTTCTTGGCAGTATAAGTTTGTCAGAATAATTCTGCTATCTTCAGCAGCTAAGCGAGGTGGCTTTTATAAATAGCATGGAAGAAATACAAACTTAACGATTCCAAGTACAGAAGGAATTCAATCATGATTACTGGAAGGCCTCTTATAAATAGCATGGAAGAAATACAAACTTCACGATTCCAAGTACAGAAGGAATTCAATCATGACTACTGGAAGGCCTCTGGATCCCCTGAAGGAATTTCTATGTACGGTCTTATAGAGTTTTTGGAATGTAATTCTAGCCTCTCCTTGTATTTCCAACATGTACATTTGTCTACTGCATTAATAATAAATGTTCTTAGAGAAATAGAAGTGCCTAACTATTCGGCCACAAAGGATCCTGTCTCAGGGTGCAGTGACCATTGTTTACTATTGAATGGTATTTTGCCATGGTATGCATTTGATAG

Fln Alignment:

Contig394___MDAHNGDQKVVL----EEEQSLIEEVALVVPVTDDPSLPVFTFRVWVLGCVSCVLLMFVNTFFSYRTQPLTISGILAQILVLPIGKFMAATLPTKKLRVPYFGWEWSVNPGPFNMKEHVLITIFANSGVSYGGGDAYSIGAINVMKAFYKQNVSFIAALIIVLTTQVLGYGWAGLLRKYLVDPADMWWPSNLAQVSLFRALHEKDHSRKRLSRMQFFTIFTVASFAYYTLPGYMFTILTFFSWVCWIWPHNITANQLGSGYKGLGLGAFSFDWAGISAYHGSPLVTPWFSTLNVAVGFVIFIYIIMPLSYWKYEIFEARKFPLFSSDLFTATGQKYNTTQILTPQFNLNIRAYNDYGKLYLTPLFALSIGSGFARIAATFTHVLLFNGHDILKRSRSALNADKLDVHARLMKNYKGVPEWWFLILLVGSVAFCILLSFVWKDEVQIPWWGLVLACALAWVITLPIGVIQATTNQQPGYDIIAQYMFGYVLPGKPIANLLFKIYGRISSIHALSFLADLKLGHYMKIPPRCMYAAQLVGTLLAGVVNLVVAWWMLESIDNICNVEALPPDSPWTCPKYRVTFDQSVIWGLVGPRRMFGNHQLYENLVWLFLVGALLPVPFWILSKLFPKQKWISQINMPVLTYGFAGMPPATPANIASWIITGTIFNYFVFRYRKRWWQRYNYVLSAALDAGTAFMGVLLYFALGMQQKNLTWWGTELDHCPLASCPTAPGIVVKGCPVF
O23482_____________MDAEKATDKTNVHLSSDHERCPVEEVALVVPETDDPSLPVMTFRAWFLGLTSCVLLIFLNTFFTYRTQPLTISAILMQIAVLPIGKFMARTLPTTSHNL--LGWSFSLNPGPFNIKEHVIITIFANCGVAYGGGDAYSIGAITVMKAYYKQSLSFICGLFIVLTTQILGYGWAGILRRYLVDPVDMWWPSNLAQVSLFRALHEKENKSKGLTRMKFFLVALGASFIYYALPGYLFPILTFFSWVCWAWPNSITAQQVGSGYHGLGVGAFTLDWAGISAYHGSPLVAPWSSILNVGVGFIMFIYIIVPVCYWKFNTFDARKFPIFSNQLFTTSGQKYDTTKILTPQFDLDIGAYNNYGKLYLSPLFALSIGSGFARFTATLTHVALFNGRDIWKQTWSAVNTTKLDIHGKLMQSYKKVPEWWFYILLAGSVAMSLLMSFVWKESVQLPWWGMLFAFALAFIVTLPIGVIQATTNQQPGYDIIGQFIIGYILPGKPIANLIFKIYGRISTVHALSFLADLKLGHYMKIPPRCMYTAQLVGTVVAGVVNLGVAWWMLESIQDICDIEGDHPNSPWTCPKYRVTFDASVIWGLIGPRRLFGPGGMYRNLVWLFLIGAVLPVPVWALSKIFPNKKWIPLINIPVISYGFAGMPPATPTNIASWLVTGTIFNYFVFNYHKRWWQKYNYVLSAALDAGTAFMGVLLFFALQNAGHDLKWWGTEVDHCPLASCPTAPGIKAKGCPVF

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
319	50		50		1.0
594		71	28		1.0
852	12	87			0.992554
2232	11		77		0.968132
2235			88	11	0.923564
2334	14		85		0.993533
2726	25			75	0.996473
2727	25	75			0.996473
2729			25	75	0.996473
2730		75		25	0.996473
2766	33	66			0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain