SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene389

Length: 1440 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene389

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PIN-like auxin efflux carrier n=1 Tax=Picea abies RepID=B5TXD0_PICAB	-	-	59%
FL-Next	tr=PIN-like auxin efflux carrier; Picea abies (Norway spruce) (Picea excelsa).	-	-	66%
Sma3	Auxin efflux carrier component	-	-	-

Source	Gene names
Sma3	AEC1; AEC2; AEC3; AEH1; AEH2; AGR; AGR1; AT1G23080; At1g23080; At1g70940; At1g77110; At2g01420; At5g15100; At5g16530; At5g57090; CS-PIN1; EIR1; F15H11.14; F22K20.18; F2G14_220; F2I9.4; GSVIVT00014302001; GSVIVT00017824001; GSVIVT00020886001; GSVIVT0002325

Source	GOs	Term	Type	Identity
Sma3	lytic vacuole	GO:0000323	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	auxin efflux carrier complex	GO:0009921	Cellular Component	-
Sma3	basal plasma membrane	GO:0009925	Cellular Component	-
Sma3	cell surface	GO:0009986	Cellular Component	-
Sma3	vesicle membrane	GO:0012506	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	lateral plasma membrane	GO:0016328	Cellular Component	-
Sma3	apical part of cell	GO:0045177	Cellular Component	-
Sma3	auxin efflux transmembrane transporter activity	GO:0010329	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	pattern specification process	GO:0007389	Biological Process	-
Sma3	gravitropism	GO:0009630	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	auxin polar transport	GO:0009926	Biological Process	-
Sma3	longitudinal axis specification	GO:0009942	Biological Process	-
Sma3	positive gravitropism	GO:0009958	Biological Process	-
Sma3	regulation of root meristem growth	GO:0010082	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	root hair initiation	GO:0048766	Biological Process	-
Sma3	root hair elongation	GO:0048767	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Auxin efflux carrier	IPR004776	-	-
Sma3	Mpp10 protein	IPR007151	-	-
Sma3	Auxin efflux carrier, plant type	IPR014024	-	-
Sma3	Superoxide dismutase, copper/zinc, binding site	IPR018152	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G57090.1	EIR1, WAV6, ATPIN2, PIN2, AGR, AGR1 Auxin efflux carrier family protein chr5:23100765-23104456 FORWARD LENGTH=647	60%
RefSeq	Arabidopsis thaliana	NP_568848.1	auxin efflux carrier component 2 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002312436.1	auxin efflux carrier component [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B5TXD0

Fln msg: Distance to subject end: 218 aas, your sequence is shorter than subject: 478 - 699

Fln protein: MITLKDLYSVLSAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVAVFAVPLLSFHFISTNNPYTMNYRFIAADSLQKIIILVVLGIWTSFGKSGSLEWMITLFSLSTLPNTLVMGIPLLKAMYGDFSGSLMVQVVVLQSVIWYTLMLFMFEYRGAKMLIMEQFPDTAASIVSFRVDSDVMSLDGREPLQADAEVGDDGKLHVVVRRSTSSRSVLSSHRSQGLGSLPSLTPRPSNLTGAEIYSLHSSRNPTPRGSSFNHTDFYSMLSGNPPRGSSNLSPRHSNFQSTDVYSMNSSRGPTPRTSNFDEEVSKDVKGSNHGRFGYSGGMTPYGHRSQGSLGRSISGGLVEPMNSSGNGVPPPYPSPNPGMLSPNAKKITSQGDAARSSPQQQQQQKLNDAAKELHMFVWSSSASPVSEGNQLHVFGGTHELGGAHLITMLKVIQMGRKYARLISILSMEAKAYTRLPVDLTTNMLVGIS

Protein Length: 479

Fln nts: GAAAAG_-_ATGATTACCTTGAAGGATTTATATAGTGTACTGAGTGCAGTGGTTCCTCTGTATGTGGCTATGATATTGGCCTATGGCTCTGTGAAATGGTGGAAGATTTTTACTCCAGATCAATGCTCTGGAATAAACCGTTTTGTGGCTGTTTTTGCTGTTCCATTATTGTCTTTCCATTTTATCTCCACCAACAATCCTTACACCATGAATTACAGATTCATAGCTGCAGATTCTCTGCAGAAGATTATTATTTTGGTAGTTCTTGGAATATGGACTTCTTTTGGGAAAAGTGGAAGTTTAGAGTGGATGATCACGTTGTTTTCACTCTCCACTCTACCTAACACACTTGTGATGGGGATTCCTCTGCTCAAGGCCATGTATGGAGATTTCTCTGGAAGTTTAATGGTACAGGTTGTGGTTTTACAGAGTGTAATCTGGTACACTCTCATGCTTTTCATGTTTGAGTACAGAGGTGCCAAAATGCTTATCATGGAGCAGTTTCCAGACACTGCTGCTTCCATTGTTTCCTTCAGGGTTGATTCAGATGTCATGTCCTTAGATGGGAGAGAGCCTCTGCAGGCAGATGCAGAGGTTGGAGACGATGGTAAGCTTCATGTGGTAGTGCGGAGGTCGACTTCGTCTAGGTCTGTTCTTTCTTCGCACAGATCACAGGGGTTGGGATCTCTTCCCTCTCTGACACCCAGGCCTTCGAATCTCACAGGCGCTGAGATCTATTCGCTCCATTCATCTCGGAATCCGACCCCAAGGGGCTCTAGCTTTAATCACACTGATTTCTACTCCATGTTGTCTGGGAATCCACCACGAGGGAGCTCTAATCTTAGTCCCCGCCACTCAAATTTCCAGTCCACAGATGTGTATTCTATGAATTCGTCCAGAGGGCCAACACCAAGAACTTCAAACTTCGACGAGGAAGTCTCCAAGGACGTCAAGGGATCGAACCACGGTCGCTTTGGGTATTCTGGTGGAATGACCCCTTATGGGCATAGATCACAGGGAAGCCTGGGCAGAAGCATAAGTGGGGGACTGGTGGAGCCCATGAACTCGTCAGGCAATGGGGTGCCACCACCATACCCATCTCCGAATCCTGGAATGTTATCGCCAAATGCCAAGAAAATTACCTCACAGGGCGACGCAGCACGATCCTCACCACAGCAACAACAACAGCAGAAGCTCAACGATGCTGCTAAGGAGCTTCATATGTTTGTGTGGAGCTCCAGTGCCTCTCCTGTATCAGAGGGAAACCAGCTTCATGTTTTCGGTGGAACACATGAGCTTGGAGGAGCCCACCTGATAACAATGCTAAAAGTGATCCAAATGGGAAGGAAGTACGCACGGTTGATCAGCATCCTGTCAATGGAGGCAAAGGCTTACACGAGACTTCCAGTGGATCTTACGACGAATATGCTCGTGGGCATTTCA

Fln Alignment:

Contig389___MITLKDLYSVLSAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVAVFAVPLLSFHFISTNNPYTMNYRFIAADSLQKIIILVVLGIWTSFGKSGSLEWMITLFSLSTLPNTLVMGIPLLKAMYGDFSGXXXXXXXXXXXXIWYTLMLFMFEYRGAKMLIMEQFPDTAASIVSFRVDSDVMSLDGREPLQADAEVGDDGKXXXXXXXXXXXXXXXXXXXXQGLGSLPSLTPRPSNLTGAEIYSLHSSRNPTPRGSSFNHTDFYSMLSGNPPRGSSNLSPRHSNFQSTDVYSMNSSRGPTPRTSNFDEEVSKDVKGS-------------NHGRFG----YSGGMTPYGHRSQGSLGRSISGGLVEPMXXXXXXXXXXXXXXXXXMLSPNAKKITSQGDAARSSPXXXXXXKLNDAAKELHMFVWSSSASPVSEGNQLHVFGG
B5TXD0_____________MIKAGDLYNVLVAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVAIFAVPLLSFHFISSNDPYTMNFKFIAADTLQKLIMLVVLGLWTNFTRSGSPEWMITIFSVSTLPNTLVMGIPLLKAMYGNFSGNLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPDTAASIVSFKVDSDVVSLDGRELLQTDAEIGDDGKLHVTVRKSTSSRSVISSRRSMGLGSLPSMTPRPSNLTGAEIYSL----NPTPRGSNFNHSDFYSMMAGR------GMSPRQSNFGPSDAYSLQSSRGPTPRPSNFDDENTRDFKSGINNNPVAPANAMMNSPRFGPPLYPPGHMHPYAHRPQ---QQQPQPGLEPASNAANNVAGYPAPNPDVLSTNSSSRPPAAKRNMASDPIRSPQQAKGQHDAKELHMFVWSSSASPVSEGG-LHVFGG

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
288	85		14		0.993533
289	85		14		0.993533
294	57		42		1.0
369		66		33	1.0
528		50		50	1.0
537			40	60	1.0
599	83		16		0.994512
602	83		16		0.994512
657		16		83	0.994512
978		50		50	1.0
1186	25		75		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain