SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene386

Length: 1832 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene386 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytosolic aldehyde dehydrogenase n=1 Tax=Oryza sativa Japonica Group RepID=Q9LRE9_ORYSJ	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G24503.1	ALDH2C4, ALDH1A, REF1 aldehyde dehydrogenase 2C4 chr3:8919732-8923029 REVERSE LENGTH=501	60%
RefSeq	Arabidopsis thaliana	NP_566749.1	aldehyde dehydrogenase 2C4 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002324977.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLF5

Fln msg:

Fln protein: MAPLSSESNTVLPQVKYTKLFINGEFVDSVSGKTFETIDPRTEEAITRVSEAQKEDVDLAVKAARAAFDHGPWPRMSGYERGCIMYKYAELVLQHVEELAALETLDNGKPLDMARAMDIPYCAQVIQYYAGSADKIHGLTLKMSGQYQGYTLHEPIGVVGLIIPWNYPMVLFFCKVAPALAAGCTIVIKSAEQTPLTALYCAQLAKEAGIPPGVLNVLSGFGETAGAAISSHMDIDKVSFTGSTQVGRLIMEAAAKSNLKPITLELGGKSPVIVMDDADVDTAVNIAHLAIFNNMGQVCLAGSRVFVQEGIYDDFLKKAVARAKKQVVGDPFQPGVEHGPQIDKMQYEKVLEYIQYGKRDGAKLLFGGNSLGDKGFYIEPTIFSDVEDDMQIAKEEIFGPVMSILKFKTIEEVIERGNKTIYGLGAGIVTKDINIANRLSRSLRAGTVWINSYLAVSPDAPLGGYKMSGFGREFGSYGLENYLQVKCVITPLQDSPWL*

Protein Length: 500

Fln nts: CGACCTGCAGTGTCAGTGTCAGCGATGGTGTCGTGTTGCGAAATTTGGTATCTCACTGCTATTTACTAATTTTTAATGACACCCACTCTCAGCATTAGCCTCCCAATTTAAAGCAGACCTCACTTGCCAAGTTTTCAGGCTGTTCAAAATATTTTCTCTGCACAGGGATCGTATCCTCCAACTTTCTCAGACACTTTCAGATATTTCTCTGCAAAGAT_-_ATGGCGCCTCTTTCCTCCGAATCAAACACAGTTCTGCCGCAAGTGAAATATACGAAGCTGTTCATCAATGGAGAATTTGTAGATTCAGTTTCAGGAAAAACATTTGAGACAATCGATCCTCGAACAGAGGAAGCGATAACGCGCGTATCAGAGGCTCAGAAAGAAGATGTGGATTTGGCTGTAAAAGCAGCTCGTGCGGCCTTCGATCACGGGCCATGGCCTCGCATGTCTGGTTATGAAAGAGGGTGCATCATGTACAAGTATGCAGAGCTGGTGTTGCAACATGTCGAAGAACTCGCAGCCCTTGAAACTTTGGACAATGGAAAACCGCTGGATATGGCTCGGGCGATGGACATACCGTATTGTGCTCAAGTTATCCAATACTACGCCGGGTCAGCTGATAAAATTCATGGACTAACATTGAAGATGAGTGGGCAGTATCAGGGTTATACATTGCATGAACCCATTGGGGTCGTTGGTCTGATAATACCGTGGAACTATCCAATGGTGCTGTTTTTCTGCAAGGTCGCTCCTGCCTTGGCCGCCGGATGTACAATAGTCATCAAATCTGCAGAGCAGACTCCCTTAACTGCTCTATATTGTGCCCAACTGGCCAAGGAGGCAGGGATTCCCCCTGGTGTCCTAAATGTGCTCTCTGGTTTTGGTGAAACTGCGGGCGCTGCTATAAGCAGCCACATGGATATTGATAAGGTATCATTTACAGGGTCGACTCAAGTTGGGCGACTTATCATGGAAGCTGCTGCAAAAAGCAACCTGAAGCCCATCACTTTAGAACTGGGTGGAAAATCCCCTGTCATTGTTATGGACGATGCCGATGTTGATACAGCTGTGAATATTGCCCATCTTGCAATATTTAATAACATGGGACAAGTATGCCTAGCAGGGTCACGGGTGTTTGTTCAAGAAGGCATTTATGATGATTTTTTGAAGAAAGCAGTGGCAAGAGCAAAGAAGCAAGTGGTGGGCGACCCGTTTCAGCCAGGAGTCGAACACGGCCCTCAGATTGATAAGATGCAGTATGAAAAAGTATTAGAGTATATTCAATATGGAAAAAGAGATGGAGCTAAATTATTATTCGGTGGAAATTCTTTGGGTGACAAAGGATTTTACATTGAACCAACAATATTCTCAGATGTTGAGGATGATATGCAGATTGCAAAGGAAGAAATATTTGGACCTGTTATGTCCATCTTAAAGTTTAAAACCATAGAAGAAGTAATAGAGAGAGGAAATAAAACTATTTATGGTTTAGGAGCTGGAATTGTTACTAAAGATATAAATATAGCAAACAGACTTTCTAGATCTCTTCGAGCTGGAACTGTGTGGATTAATAGCTATCTTGCAGTGAGTCCAGATGCTCCACTTGGAGGATACAAGATGAGTGGGTTTGGAAGAGAATTTGGCTCTTATGGCCTTGAGAATTACTTACAAGTTAAATGTGTCATTACTCCCCTTCAAGATTCACCTTGGCTATAG___AAATGTTTTATGAGGTCAATTTTGACATTATTGTTATTTGAAATATAAATAATACTTATTACTAAACATATTCTTATATCTAAATTCAATTCAGTGTACATTATTTATGATTTTTTA

Fln Alignment:

Contig386___MAPLSSESNTVLPQV--KYTKLFINGEFVDSVSGKTFETIDPRTEEAITRVSEAQKEDVDLAVKAARAAFDHGPWPRMSGYERGCIMYKYAELVLQHVEELAALETLDNGKPLDMARAMDIPYCAQVIQYYAGSADKIHGLTLKMSGQYQGYTLHEPIGVVGLIIPWNYPMVLFFCKVAPALAAGCTIVIKSAEQTPLTALYCAQLAKEAGIPPGVLNVLSGFGETAGAAISSHMDIDKVSFTGSTQVGRLIMEAAAKSNLKPITLELGGKSPVIVMDDADVDTAVNIAHLAIFNNMGQVCLAGSRVFVQEGIYDDFLXXXXXXXXXXXVGDPFQPGVEHGPQIDKMQYEKVLEYIQYGKRDGAKLLFGGNSLGDKGFYIEPTIFSDVEDDMQIAKEEIFGPVMSILKFKTIEEVIERGNKTIYGLGAGIVTKDINIANRLSRSLRAGTVWINSYLAVSPDAPLGGYKMSGFGREFGSYGLENYLQVKCVITPLQDSPWL
B8LLF5_____________MAPLSSESNTVLPPVTVKYTKLFINGEFVDSVSGKTFETLDPRTGEAITRVSEAQKEDVDLAVKAARAAFDHGPWPRMSGFERGRILYKYADLVSQHGDELAALETFDNGKPLDMARILDIPYSVEVIRYNAGFADKIHGLTLKMSGQYQGYTLHEPIGVVGQMIPWNFPILTFFSKVSPALACGCTVVIKSAEQTPLTALYCAQLANEAGIPPGVLNVLSGFGETAGASISSHMDIDKISFTGSTQVGRLIMEAAAKSNLKPVTLEMGGKSPLIVMDDADVDKAVNIAHLAVYTNMGQVCLAGSRVFVQEGIYDEFVKKAVARAKQQVVGDPFQPGVQHGPQIDKMQFEKILKYIQYGKRDGANLVLGGNSLGNKGFYIEPTIFSDVEDDMQIAKEEIFGPIMSILKFKTIEEVIERGNKTIYGLGAGIITKDIDIANRLARSLRVGTVWINCYLVVGADVPLGGYKMSGIGREYGSYGLTNYLQVKCVISPLQHSPWL

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
950	10	90			0.90298
953	90			10	0.90298
954	90			10	0.90298
1072			78	21	1.0
1088	87		12		0.992554
1094		40	60		1.0
1095	40			60	1.0
1105			80	20	0.995493
1108		20	80		0.995493
1206	16			83	0.994512
1207			83	16	0.994512
1209	83		16		0.994512
1211	40			60	1.0
1212		40		60	1.0
1216		40	20	40	1.0
1218		33	66		0.997452
1250	66			33	0.997452
1251		66	33		0.997452
1304	50			50	1.0
1319	50		50		1.0
1355		50		50	1.0
1544		10		90	0.90298
1589	10		90		0.90298
1592		10		90	0.90298
1610		50		50	1.0
1612	10	90			0.90298
1698		14	85		0.993533
1699	85	14			0.993533
1700	85	14			0.993533
1701	85	14			0.993533
1713		16	83		0.994512
1714	83	16			0.994512
1715		16	83		0.994512
1716	16		83		0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain